Lag0024174 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0024174
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Transcription factor, Myb superfamily
Location	chr10: 978247 .. 978615 (-)
RNA-Seq Expression	Lag0024174
Synteny	Lag0024174

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAGAGCTCCATGCTGTGATAAAAATGGCCTGAAAAAAGGTCCATGGACTCCTGAGGAAGATCAAAAGCTCGTTACCTATATCCAGATTCATGGGCCTGGAAATTGGCGTAATCTTCCTAAAAATGCTGGTATTTTTCTAATTCTTCTGTGTGTTTTCTTTATGGGGTTGTTGAAATTCAAGAGCAAAAATGAAAAGTTGGGGTTTTTTTTTACAGGACTTCAAAGATGTGGAAAAAGTTGTCGGCTTCGATGGACTAATTATCTGAGGCCTGATATTAAGAGAGGGAGGTTTTCTTTTGAAGAAGAAGAGACCATAATCCATTTGCCCCAATTCCTCATGCGGACGTCTTGGTACACTGGGTGA

mRNA sequence

ATGGGAAGAGCTCCATGCTGTGATAAAAATGGCCTGAAAAAAGGTCCATGGACTCCTGAGGAAGATCAAAAGCTCGTTACCTATATCCAGATTCATGGGCCTGGAAATTGGCGTAATCTTCCTAAAAATGCTGGACTTCAAAGATGTGGAAAAAGTTGTCGGCTTCGATGGACTAATTATCTGAGGCCTGATATTAAGAGAGGGAGGTTTTCTTTTGAAGAAGAAGAGACCATAATCCATTTGCCCCAATTCCTCATGCGGACGTCTTGGTACACTGGGTGA

Coding sequence (CDS)

ATGGGAAGAGCTCCATGCTGTGATAAAAATGGCCTGAAAAAAGGTCCATGGACTCCTGAGGAAGATCAAAAGCTCGTTACCTATATCCAGATTCATGGGCCTGGAAATTGGCGTAATCTTCCTAAAAATGCTGGACTTCAAAGATGTGGAAAAAGTTGTCGGCTTCGATGGACTAATTATCTGAGGCCTGATATTAAGAGAGGGAGGTTTTCTTTTGAAGAAGAAGAGACCATAATCCATTTGCCCCAATTCCTCATGCGGACGTCTTGGTACACTGGGTGA

Protein sequence

MGRAPCCDKNGLKKGPWTPEEDQKLVTYIQIHGPGNWRNLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIHLPQFLMRTSWYTG

Homology

[Close]

BLAST of Lag0024174 vs. NCBI nr
Match: KAE8645760.1 (hypothetical protein Csa_020345 [Cucumis sativus])

HSP 1 Score: 181.4 bits (459), Expect = 3.5e-42
Identity = 80/85 (94.12%), Postives = 80/85 (94.12%), Query Frame = 0


Query: 1   MGRAPCCDKNGLKKGPWTPEEDQKLVTYIQIHGPGNWRNLPKNAGLQRCGKSCRLRWTNY 60
           MGRAPCCDKNGLKKGPWTPEEDQKLV YIQIHGPGNWRNLPKNAGLQRCGKSCRLRWTNY
Sbjct: 318 MGRAPCCDKNGLKKGPWTPEEDQKLVNYIQIHGPGNWRNLPKNAGLQRCGKSCRLRWTNY 377

Query: 61  LRPDIKRGRFSFEEEETIIHLPQFL 86
           LRPDIKRGRFSFEEEETII L   L
Sbjct: 378 LRPDIKRGRFSFEEEETIIQLHSVL 402

[Close]

BLAST of Lag0024174 vs. NCBI nr
Match: XP_004137011.1 (transcription factor MYB41 [Cucumis sativus])

HSP 1 Score: 181.4 bits (459), Expect = 3.5e-42
Identity = 80/85 (94.12%), Postives = 80/85 (94.12%), Query Frame = 0


Query: 1  MGRAPCCDKNGLKKGPWTPEEDQKLVTYIQIHGPGNWRNLPKNAGLQRCGKSCRLRWTNY 60
          MGRAPCCDKNGLKKGPWTPEEDQKLV YIQIHGPGNWRNLPKNAGLQRCGKSCRLRWTNY
Sbjct: 1  MGRAPCCDKNGLKKGPWTPEEDQKLVNYIQIHGPGNWRNLPKNAGLQRCGKSCRLRWTNY 60

Query: 61 LRPDIKRGRFSFEEEETIIHLPQFL 86
          LRPDIKRGRFSFEEEETII L   L
Sbjct: 61 LRPDIKRGRFSFEEEETIIQLHSVL 85

[Close]

BLAST of Lag0024174 vs. NCBI nr
Match: XP_038888637.1 (transcription factor MYB41-like [Benincasa hispida])

HSP 1 Score: 181.4 bits (459), Expect = 3.5e-42
Identity = 79/85 (92.94%), Postives = 81/85 (95.29%), Query Frame = 0


Query: 1  MGRAPCCDKNGLKKGPWTPEEDQKLVTYIQIHGPGNWRNLPKNAGLQRCGKSCRLRWTNY 60
          MGRAPCCDKNGLKKGPWTPEEDQKLVT+IQ+HGPGNWRNLPKNAGLQRCGKSCRLRWTNY
Sbjct: 1  MGRAPCCDKNGLKKGPWTPEEDQKLVTFIQVHGPGNWRNLPKNAGLQRCGKSCRLRWTNY 60

Query: 61 LRPDIKRGRFSFEEEETIIHLPQFL 86
          LRPDIKRGRFSFEEEETII L   L
Sbjct: 61 LRPDIKRGRFSFEEEETIIQLHSVL 85

[Close]

BLAST of Lag0024174 vs. NCBI nr
Match: KAG6589192.1 (putative GPI-anchored protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 180.3 bits (456), Expect = 7.9e-42
Identity = 79/85 (92.94%), Postives = 80/85 (94.12%), Query Frame = 0


Query: 1  MGRAPCCDKNGLKKGPWTPEEDQKLVTYIQIHGPGNWRNLPKNAGLQRCGKSCRLRWTNY 60
          MGRAPCCDKNGLKKGPWTPEEDQKLV Y+QIHGPGNWRNLPKNAGLQRCGKSCRLRWTNY
Sbjct: 1  MGRAPCCDKNGLKKGPWTPEEDQKLVGYVQIHGPGNWRNLPKNAGLQRCGKSCRLRWTNY 60

Query: 61 LRPDIKRGRFSFEEEETIIHLPQFL 86
          LRPDIKRGRFSFEEEETII L   L
Sbjct: 61 LRPDIKRGRFSFEEEETIIQLHSVL 85

[Close]

BLAST of Lag0024174 vs. NCBI nr
Match: XP_022136093.1 (transcription factor MYB41-like [Momordica charantia])

HSP 1 Score: 180.3 bits (456), Expect = 7.9e-42
Identity = 79/85 (92.94%), Postives = 80/85 (94.12%), Query Frame = 0


Query: 1  MGRAPCCDKNGLKKGPWTPEEDQKLVTYIQIHGPGNWRNLPKNAGLQRCGKSCRLRWTNY 60
          MGRAPCCDKNGLKKGPWTPEEDQKL +YIQIHGPGNWRNLPKNAGLQRCGKSCRLRWTNY
Sbjct: 1  MGRAPCCDKNGLKKGPWTPEEDQKLTSYIQIHGPGNWRNLPKNAGLQRCGKSCRLRWTNY 60

Query: 61 LRPDIKRGRFSFEEEETIIHLPQFL 86
          LRPDIKRGRFSFEEEETII L   L
Sbjct: 61 LRPDIKRGRFSFEEEETIIQLHSVL 85

[Close]

BLAST of Lag0024174 vs. ExPASy Swiss-Prot
Match: Q9M0J5 (Transcription factor MYB41 OS=Arabidopsis thaliana OX=3702 GN=MYB41 PE=1 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 5.3e-41
Identity = 73/90 (81.11%), Postives = 78/90 (86.67%), Query Frame = 0


Query: 1  MGRAPCCDKNGLKKGPWTPEEDQKLVTYIQIHGPGNWRNLPKNAGLQRCGKSCRLRWTNY 60
          MGR+PCCDKNG+KKGPWT EEDQKL+ YI+ HGPGNWR LPKNAGL RCGKSCRLRWTNY
Sbjct: 1  MGRSPCCDKNGVKKGPWTAEEDQKLIDYIRFHGPGNWRTLPKNAGLHRCGKSCRLRWTNY 60

Query: 61 LRPDIKRGRFSFEEEETIIHLPQFLMRTSW 91
          LRPDIKRGRFSFEEEETII L   +M   W
Sbjct: 61 LRPDIKRGRFSFEEEETIIQL-HSVMGNKW 89

[Close]

BLAST of Lag0024174 vs. ExPASy Swiss-Prot
Match: Q9LDR8 (Transcription factor MYB102 OS=Arabidopsis thaliana OX=3702 GN=MYB102 PE=2 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 1.2e-40
Identity = 74/85 (87.06%), Postives = 76/85 (89.41%), Query Frame = 0


Query: 1  MGRAPCCDKNGLKKGPWTPEEDQKLVTYIQIHGPGNWRNLPKNAGLQRCGKSCRLRWTNY 60
          M R+PCC+KNGLKKGPWT EEDQKLV YIQ HG GNWR LPKNAGLQRCGKSCRLRWTNY
Sbjct: 1  MARSPCCEKNGLKKGPWTSEEDQKLVDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNY 60

Query: 61 LRPDIKRGRFSFEEEETIIHLPQFL 86
          LRPDIKRGRFSFEEEETII L  FL
Sbjct: 61 LRPDIKRGRFSFEEEETIIQLHSFL 85

[Close]

BLAST of Lag0024174 vs. ExPASy Swiss-Prot
Match: Q9M0Y5 (Transcription factor MYB74 OS=Arabidopsis thaliana OX=3702 GN=MYB74 PE=2 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 2.6e-40
Identity = 75/91 (82.42%), Postives = 79/91 (86.81%), Query Frame = 0


Query: 1  MGRAPCCD-KNGLKKGPWTPEEDQKLVTYIQIHGPGNWRNLPKNAGLQRCGKSCRLRWTN 60
          MGR+PCC+ KNGLKKGPWTPEEDQKL+ YI IHG GNWR LPKNAGLQRCGKSCRLRWTN
Sbjct: 1  MGRSPCCEKKNGLKKGPWTPEEDQKLIDYINIHGYGNWRTLPKNAGLQRCGKSCRLRWTN 60

Query: 61 YLRPDIKRGRFSFEEEETIIHLPQFLMRTSW 91
          YLRPDIKRGRFSFEEEETII L   +M   W
Sbjct: 61 YLRPDIKRGRFSFEEEETIIQL-HSIMGNKW 90

[Close]

BLAST of Lag0024174 vs. ExPASy Swiss-Prot
Match: Q9S9Z2 (Transcription factor MYB93 OS=Arabidopsis thaliana OX=3702 GN=MYB93 PE=1 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 7.9e-37
Identity = 66/85 (77.65%), Postives = 73/85 (85.88%), Query Frame = 0


Query: 1  MGRAPCCDKNGLKKGPWTPEEDQKLVTYIQIHGPGNWRNLPKNAGLQRCGKSCRLRWTNY 60
          MGR+PCCD+NGLKKGPWTPEEDQKL+ YI  HG G+WR LPK A L RCGKSCRLRWTNY
Sbjct: 1  MGRSPCCDENGLKKGPWTPEEDQKLIDYIHKHGHGSWRALPKLADLNRCGKSCRLRWTNY 60

Query: 61 LRPDIKRGRFSFEEEETIIHLPQFL 86
          LRPDIKRG+FS EEE+TI+HL   L
Sbjct: 61 LRPDIKRGKFSAEEEQTILHLHSIL 85

[Close]

BLAST of Lag0024174 vs. ExPASy Swiss-Prot
Match: Q9LE63 (Transcription factor MYB106 OS=Arabidopsis thaliana OX=3702 GN=MYB106 PE=2 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 1.0e-36
Identity = 65/85 (76.47%), Postives = 75/85 (88.24%), Query Frame = 0


Query: 1  MGRAPCCDKNGLKKGPWTPEEDQKLVTYIQIHGPGNWRNLPKNAGLQRCGKSCRLRWTNY 60
          MGR+PCCDK GLKKGPWTPEEDQKL+ YI+ HG G+WR+LP+ AGLQRCGKSCRLRWTNY
Sbjct: 1  MGRSPCCDKAGLKKGPWTPEEDQKLLAYIEEHGHGSWRSLPEKAGLQRCGKSCRLRWTNY 60

Query: 61 LRPDIKRGRFSFEEEETIIHLPQFL 86
          LRPDIKRG+F+ +EE+TII L   L
Sbjct: 61 LRPDIKRGKFTVQEEQTIIQLHALL 85

The following BLAST results are available for this feature:

BLAST of Lag0024174 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8645760.1	3.5e-42	94.12	hypothetical protein Csa_020345 [Cucumis sativus]	[more]
XP_004137011.1	3.5e-42	94.12	transcription factor MYB41 [Cucumis sativus]	[more]
XP_038888637.1	3.5e-42	92.94	transcription factor MYB41-like [Benincasa hispida]	[more]
KAG6589192.1	7.9e-42	92.94	putative GPI-anchored protein, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022136093.1	7.9e-42	92.94	transcription factor MYB41-like [Momordica charantia]	[more]

BLAST of Lag0024174 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M0J5	5.3e-41	81.11	Transcription factor MYB41 OS=Arabidopsis thaliana OX=3702 GN=MYB41 PE=1 SV=1	[more]
Q9LDR8	1.2e-40	87.06	Transcription factor MYB102 OS=Arabidopsis thaliana OX=3702 GN=MYB102 PE=2 SV=1	[more]
Q9M0Y5	2.6e-40	82.42	Transcription factor MYB74 OS=Arabidopsis thaliana OX=3702 GN=MYB74 PE=2 SV=1	[more]
Q9S9Z2	7.9e-37	77.65	Transcription factor MYB93 OS=Arabidopsis thaliana OX=3702 GN=MYB93 PE=1 SV=1	[more]
Q9LE63	1.0e-36	76.47	Transcription factor MYB106 OS=Arabidopsis thaliana OX=3702 GN=MYB106 PE=2 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 13..63 e-value: 1.0E-14 score: 64.9
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 9..61 score: 11.695095
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 16..61 e-value: 6.43754E-13 score: 55.6594
None	No IPR available	GENE3D	1.10.10.60		coord: 13..66 e-value: 9.0E-22 score: 78.8
None	No IPR available	PANTHER	PTHR10641:SF1248	TRANSCRIPTION FACTOR MYB41	coord: 1..82
None	No IPR available	PANTHER	PTHR10641	MYB FAMILY TRANSCRIPTION FACTOR	coord: 1..82
IPR017930	Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 14..61 e-value: 6.6E-16 score: 58.2
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 9..65 score: 26.04311
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 15..83

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0024174.1	Lag0024174.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010597	green leaf volatile biosynthetic process
molecular_function	GO:0000976	transcription cis-regulatory region binding