Lag0024161 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0024161
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionPentatricopeptide repeat-containing protein
Locationchr10: 886994 .. 887621 (+)
RNA-Seq ExpressionLag0024161
SyntenyLag0024161
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGACGCAGAATCTCAAAATTTCGCCGGGAACGATATCCTTCATCATCGAAGAGTATGGTAAGCAGGGCCTTGTCGATAATGCGGTTACGATATTCAATCAATGTTCTAAATCTATCGATTGTCCACAAACGGTTGAGGTCTATAACGCGTTACTTTTTGCTCATTGTGAGGTTAAGATGTTTCATGGAGCTTATGCGTTGATTCTATGATTAGAAAAAGGGTAACTCCTGATAAAAAGACCTATGAAATTCTTGTAAATCGCTGGTTGAAGGATTGTTGAATGCGGGGTATTTAGAATCTGCCAAGAATATGGTTAGGAAAATGACGAAAGAAGGGTCTGTGCCTGATATAGGGACTTTTAATTCTTTGATTACTGTTATATGTAACTCTGGAGAAGTTGATTTTTGCATCAATATTTATCATGAGGTGTGCAAGTTGGGGCTTTGCCCTGATATAAATTCTTACAAGATTTTGATTCCAGCAACTTCAAAAGTTTGTAGGATTGATGAAGCATTCAGGCTTTTGCATTGCTCTATTGAGGATGGACATAAACCGTTTCCAAGTCTCGCCGGCGACAGAGAAGAAGAGGGAGAGAGAGAAGAGGGAGAAGGAGAAGAGAAGTGA

mRNA sequence

ATGAAGACGCAGAATCTCAAAATTTCGCCGGGAACGATATCCTTCATCATCGAAGAGTATGGATTGTTGAATGCGGGGTATTTAGAATCTGCCAAGAATATGGTTAGGAAAATGACGAAAGAAGGGTCTGTGCCTGATATAGGGACTTTTAATTCTTTGATTACTGTTATATGTAACTCTGGAGAAGTTGATTTTTGCATCAATATTTATCATGAGGTGTGCAAGTTGGGGCTTTGCCCTGATATAAATTCTTACAAGATTTTGATTCCAGCAACTTCAAAAGTTTGTAGGATTGATGAAGCATTCAGGCTTTTGCATTGCTCTATTGAGGATGGACATAAACCGTTTCCAAGTCTCGCCGGCGACAGAGAAGAAGAGGGAGAGAGAGAAGAGGGAGAAGGAGAAGAGAAGTGA

Coding sequence (CDS)

ATGAAGACGCAGAATCTCAAAATTTCGCCGGGAACGATATCCTTCATCATCGAAGAGTATGGATTGTTGAATGCGGGGTATTTAGAATCTGCCAAGAATATGGTTAGGAAAATGACGAAAGAAGGGTCTGTGCCTGATATAGGGACTTTTAATTCTTTGATTACTGTTATATGTAACTCTGGAGAAGTTGATTTTTGCATCAATATTTATCATGAGGTGTGCAAGTTGGGGCTTTGCCCTGATATAAATTCTTACAAGATTTTGATTCCAGCAACTTCAAAAGTTTGTAGGATTGATGAAGCATTCAGGCTTTTGCATTGCTCTATTGAGGATGGACATAAACCGTTTCCAAGTCTCGCCGGCGACAGAGAAGAAGAGGGAGAGAGAGAAGAGGGAGAAGGAGAAGAGAAGTGA

Protein sequence

MKTQNLKISPGTISFIIEEYGLLNAGYLESAKNMVRKMTKEGSVPDIGTFNSLITVICNSGEVDFCINIYHEVCKLGLCPDINSYKILIPATSKVCRIDEAFRLLHCSIEDGHKPFPSLAGDREEEGEREEGEGEEK
Homology
[Close]
BLAST of Lag0024161 vs. NCBI nr
Match: XP_022151697.1 (pentatricopeptide repeat-containing protein At5g18390, mitochondrial [Momordica charantia])

HSP 1 Score: 199.9 bits (507), Expect = 1.4e-47
Identity = 92/101 (91.09%), Postives = 98/101 (97.03%), Query Frame = 0 

Query: 21  GLLNAGYLESAKNMVRKMTKEGSVPDIGTFNSLITVICNSGEVDFCINIYHEVCKLGLCP 80
           GLLNAGYLESAKNMVRKMTKEGSVPD+ TFNSLI+VICNSGEVDFCINIYHEVCKLGLCP
Sbjct: 291 GLLNAGYLESAKNMVRKMTKEGSVPDVSTFNSLISVICNSGEVDFCINIYHEVCKLGLCP 350

Query: 81  DINSYKILIPATSKVCRIDEAFRLLHCSIEDGHKPFPSLAG 122
           DIN+YKIL+PATSKV RIDEAF+LLHCS+EDGHKPFPSL G
Sbjct: 351 DINTYKILVPATSKVGRIDEAFKLLHCSVEDGHKPFPSLYG 391

[Close]
BLAST of Lag0024161 vs. NCBI nr
Match: XP_004142520.1 (pentatricopeptide repeat-containing protein At5g18390, mitochondrial [Cucumis sativus] >KGN66807.1 hypothetical protein Csa_007547 [Cucumis sativus])

HSP 1 Score: 195.7 bits (496), Expect = 2.7e-46
Identity = 93/101 (92.08%), Postives = 96/101 (95.05%), Query Frame = 0 

Query: 21  GLLNAGYLESAKNMVRKMTKEGSVPDIGTFNSLITVICNSGEVDFCINIYHEVCKLGLCP 80
           GLLNAGYLESAK+MVRKMTKEGSVPDIGTFNSLI VICNSGEVDFCINI+HEVCKLGLCP
Sbjct: 257 GLLNAGYLESAKDMVRKMTKEGSVPDIGTFNSLIDVICNSGEVDFCINIFHEVCKLGLCP 316

Query: 81  DINSYKILIPATSKVCRIDEAFRLLHCSIEDGHKPFPSLAG 122
           DIN+YKILIPATSKV RIDEAFRLLHC IEDGH PFPSL G
Sbjct: 317 DINTYKILIPATSKVGRIDEAFRLLHCCIEDGHVPFPSLYG 357

[Close]
BLAST of Lag0024161 vs. NCBI nr
Match: XP_038879743.1 (pentatricopeptide repeat-containing protein At5g18390, mitochondrial [Benincasa hispida] >XP_038879744.1 pentatricopeptide repeat-containing protein At5g18390, mitochondrial [Benincasa hispida] >XP_038879746.1 pentatricopeptide repeat-containing protein At5g18390, mitochondrial [Benincasa hispida] >XP_038879747.1 pentatricopeptide repeat-containing protein At5g18390, mitochondrial [Benincasa hispida])

HSP 1 Score: 193.7 bits (491), Expect = 1.0e-45
Identity = 92/101 (91.09%), Postives = 95/101 (94.06%), Query Frame = 0 

Query: 21  GLLNAGYLESAKNMVRKMTKEGSVPDIGTFNSLITVICNSGEVDFCINIYHEVCKLGLCP 80
           GLLNAGY ESAK+MVRKMTKEGSVPDIGTFNSLI VICNSGEVDFCINI+HEVCKLGLCP
Sbjct: 267 GLLNAGYFESAKDMVRKMTKEGSVPDIGTFNSLIDVICNSGEVDFCINIFHEVCKLGLCP 326

Query: 81  DINSYKILIPATSKVCRIDEAFRLLHCSIEDGHKPFPSLAG 122
           DIN+YKILIPATSKV RIDEAFRLLHC IEDGH PFPSL G
Sbjct: 327 DINTYKILIPATSKVGRIDEAFRLLHCCIEDGHIPFPSLYG 367

[Close]
BLAST of Lag0024161 vs. NCBI nr
Match: XP_008462724.1 (PREDICTED: pentatricopeptide repeat-containing protein At5g18390, mitochondrial [Cucumis melo] >KAA0062598.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK29718.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 191.0 bits (484), Expect = 6.6e-45
Identity = 91/101 (90.10%), Postives = 95/101 (94.06%), Query Frame = 0 

Query: 21  GLLNAGYLESAKNMVRKMTKEGSVPDIGTFNSLITVICNSGEVDFCINIYHEVCKLGLCP 80
           GLLNAGYLESAK+MVRKMTKEG VPDIGTFNSLI VICNSGEVDFCINI+HEVCKLGLCP
Sbjct: 257 GLLNAGYLESAKDMVRKMTKEGCVPDIGTFNSLIDVICNSGEVDFCINIFHEVCKLGLCP 316

Query: 81  DINSYKILIPATSKVCRIDEAFRLLHCSIEDGHKPFPSLAG 122
           DIN+YKILIPATSKV RIDEAFRLL+C IEDGH PFPSL G
Sbjct: 317 DINTYKILIPATSKVGRIDEAFRLLNCCIEDGHVPFPSLYG 357

[Close]
BLAST of Lag0024161 vs. NCBI nr
Match: XP_022988097.1 (pentatricopeptide repeat-containing protein At5g18390, mitochondrial [Cucurbita maxima])

HSP 1 Score: 189.5 bits (480), Expect = 1.9e-44
Identity = 91/101 (90.10%), Postives = 95/101 (94.06%), Query Frame = 0 

Query: 21  GLLNAGYLESAKNMVRKMTKEGSVPDIGTFNSLITVICNSGEVDFCINIYHEVCKLGLCP 80
           GLLNAGYLESAKNMVRKMTKEGSVPD+GTFNSLI VIC+SGEVDFCINIYHEVCKLGLCP
Sbjct: 269 GLLNAGYLESAKNMVRKMTKEGSVPDLGTFNSLINVICDSGEVDFCINIYHEVCKLGLCP 328

Query: 81  DINSYKILIPATSKVCRIDEAFRLLHCSIEDGHKPFPSLAG 122
           DIN+YKILIPATSKV RIDEAFRLL+  IEDGH PFPSL G
Sbjct: 329 DINTYKILIPATSKVGRIDEAFRLLNYCIEDGHIPFPSLYG 369

[Close]
BLAST of Lag0024161 vs. ExPASy Swiss-Prot
Match: Q94JX6 (Pentatricopeptide repeat-containing protein At5g18390, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g18390 PE=2 SV=2)

HSP 1 Score: 147.9 bits (372), Expect = 8.4e-35
Identity = 71/99 (71.72%), Postives = 80/99 (80.81%), Query Frame = 0 

Query: 21  GLLNAGYLESAKNMVRKMTKEGSVPDIGTFNSLITVICNSGEVDFCINIYHEVCKLGLCP 80
           GLLNAGYLESAK MV KMTK G VPDI TFN LI  I  SGEV+FCI +Y+  CKLGLC 
Sbjct: 261 GLLNAGYLESAKEMVSKMTKGGFVPDIQTFNILIEAISKSGEVEFCIEMYYTACKLGLCV 320

Query: 81  DINSYKILIPATSKVCRIDEAFRLLHCSIEDGHKPFPSL 120
           DI++YK LIPA SK+ +IDEAFRLL+  +EDGHKPFPSL
Sbjct: 321 DIDTYKTLIPAVSKIGKIDEAFRLLNNCVEDGHKPFPSL 359

[Close]
BLAST of Lag0024161 vs. ExPASy Swiss-Prot
Match: Q9FIT7 (Pentatricopeptide repeat-containing protein At5g61990, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g61990 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.2e-10
Identity = 37/115 (32.17%), Postives = 62/115 (53.91%), Query Frame = 0 

Query: 1   MKTQNLKISPGTISFIIEEYGLLNAGYLESAKNMVRKMTKEGSVPDIGTFNSLITVICNS 60
           MK +N+ ISP T   +++  G+ ++G L+ A N+V++M   G  P++  + +LI     +
Sbjct: 408 MKKRNIVISPYTYGTVVK--GMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQN 467

Query: 61  GEVDFCINIYHEVCKLGLCPDINSYKILIPATSKVCRIDEAFRLLHCSIEDGHKP 116
                 + +  E+ + G+ PDI  Y  LI   SK  R+DEA   L   +E+G KP
Sbjct: 468 SRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKP 520

[Close]
BLAST of Lag0024161 vs. ExPASy Swiss-Prot
Match: Q9SFV9 (Pentatricopeptide repeat-containing protein At3g07290, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g07290 PE=2 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.1e-09
Identity = 32/117 (27.35%), Postives = 64/117 (54.70%), Query Frame = 0 

Query: 3   TQNLKISPGTISFIIEEYGLLNAGYLESAKNMVRKMTKEGSVPDIGTFNSLITVICNSGE 62
           ++ +  +P ++S+ I  +GL   G LE A  +  +M ++G  P   T+  LI  +C+ G 
Sbjct: 257 SKEVTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGL 316

Query: 63  VDFCINIYHEVCKLGLCPDINSYKILIPATSKVCRIDEAFRLLHCSIEDGHKPFPSL 120
           +D   N++ E+   G  P++++Y +LI    +  +I+EA  +    ++D  + FPS+
Sbjct: 317 IDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKD--RIFPSV 371

[Close]
BLAST of Lag0024161 vs. ExPASy Swiss-Prot
Match: Q9ZVX5 (Pentatricopeptide repeat-containing protein At2g16880 OS=Arabidopsis thaliana OX=3702 GN=At2g16880 PE=2 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 4.6e-09
Identity = 38/121 (31.40%), Postives = 62/121 (51.24%), Query Frame = 0 

Query: 2   KTQNLKISPGTISFIIEE--YGLLNAGY-----LESAKNMVRKMTKEGSVPDIGTFNSLI 61
           +  NL  S     FI++E  YG L  G+     +E A  M  +M K    P + TFNSLI
Sbjct: 469 EAHNLLNSAHKRGFIVDEVTYGTLIMGFFREEKVEKALEMWDEMKKVKITPTVSTFNSLI 528

Query: 62  TVICNSGEVDFCINIYHEVCKLGLCPDINSYKILIPATSKVCRIDEAFRLLHCSIEDGHK 116
             +C+ G+ +  +  + E+ + GL PD +++  +I    K  R+++AF   + SI+   K
Sbjct: 529 GGLCHHGKTELAMEKFDELAESGLLPDDSTFNSIILGYCKEGRVEKAFEFYNESIKHSFK 588

[Close]
BLAST of Lag0024161 vs. ExPASy Swiss-Prot
Match: Q9FMF6 (Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g64320 PE=2 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 4.6e-09
Identity = 36/107 (33.64%), Postives = 56/107 (52.34%), Query Frame = 0 

Query: 9   SPGTISFIIEEYGLLNAGYLESAKNMVRKMTKEGSVPDIGTFNSLITVICNSGEVDFCIN 68
           +P  IS  I   GL  +G +E A    ++M   GS PDI TFNSLI  +C +G ++  + 
Sbjct: 596 APSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLT 655

Query: 69  IYHEVCKLGLCPDINSYKILIPATSKVCRIDEAFRLLHCSIEDGHKP 116
           ++ ++   G+ PD  ++  L+    K   + +A  LL   IEDG  P
Sbjct: 656 MFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFVP 702

The following BLAST results are available for this feature:
BLAST of Lag0024161 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022151697.11.4e-4791.09pentatricopeptide repeat-containing protein At5g18390, mitochondrial [Momordica ... [more]
XP_004142520.12.7e-4692.08pentatricopeptide repeat-containing protein At5g18390, mitochondrial [Cucumis sa... [more]
XP_038879743.11.0e-4591.09pentatricopeptide repeat-containing protein At5g18390, mitochondrial [Benincasa ... [more]
XP_008462724.16.6e-4590.10PREDICTED: pentatricopeptide repeat-containing protein At5g18390, mitochondrial ... [more]
XP_022988097.11.9e-4490.10pentatricopeptide repeat-containing protein At5g18390, mitochondrial [Cucurbita ... [more]
BLAST of Lag0024161 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q94JX68.4e-3571.72Pentatricopeptide repeat-containing protein At5g18390, mitochondrial OS=Arabidop... [more]
Q9FIT74.2e-1032.17Pentatricopeptide repeat-containing protein At5g61990, mitochondrial OS=Arabidop... [more]
Q9SFV92.1e-0927.35Pentatricopeptide repeat-containing protein At3g07290, mitochondrial OS=Arabidop... [more]
Q9ZVX54.6e-0931.40Pentatricopeptide repeat-containing protein At2g16880 OS=Arabidopsis thaliana OX... [more]
Q9FMF64.6e-0933.64Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidop... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 49..82
e-value: 6.6E-5
score: 20.8
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 45..91
e-value: 1.7E-7
score: 31.3
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 46..80
score: 9.733692
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 1..125
e-value: 3.9E-19
score: 71.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 114..137
NoneNo IPR availablePANTHERPTHR45613PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEINcoord: 21..119
NoneNo IPR availablePANTHERPTHR45613:SF30PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MITOCHONDRIALcoord: 21..119

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0024161.1Lag0024161.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding