Lag0024160 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0024160
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	MYND-type domain-containing protein
Location	chr10: 882978 .. 885794 (+)
RNA-Seq Expression	Lag0024160
Synteny	Lag0024160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGACCCAATGAGGAGACAAATCAAAAGTTTCCAAAGACAATCTTGCACAAGAGAGTTTCTATCCCACCTAAAGAAGACTTTACTAACCCGGGATTGGTTTACTTAACTCTCATCCTATCTTCCCCCTACACTGGCACTAAGGTCTTGCTAAAAAGCCTAAATCGAACAAACTAGGTTGCTTCCTCCTTGCCTAGGTGCCTGAAATATAATAAATTATTCTTATTCTTATAAATATAATAATTTATTAATTAATAATTTATATTTATAAATTAAATAATAATGGAATTACTCAAATAAAAATTTTCAATTTACTTAATTTTAAGTAATGTATTTGTTAATGTAATGCATCATTGAATTGAATACGCAATTTCCAGAATTCTCTTTTTTTTCTTTTTTTTTATGGCAGGCGTATTTTTTTTCTCTCCTAGGCAAGACTCCACACACTAGTTTGCAAAAAATTTAGACTTTCTCACAAAACCTTACACCTATCGGGGTGACAACAGGAATATGAGCTAAGTAACTCGCTCCTAGACTTTCAAGTCCTACTCTAAAGCAAGAAAGACACCCAACCTATGCAAGACATGTCGAAGAAAAGTTTTAAAAAGACTCCCTTTTGGGGCACTCATGATCACAACTCATCAAAAGCTATAAATTTTCGAAAAATTTCAGCCAATCCTGGAAAATCATTATCACTAAAGCAAATATATACACAATAGGCATGCAAGATATATATTAAGCACAAACGTTGGGTCGACGCACAGATGCTCAAGGCCAATCCTAGGAAATCATTATTATCACTAAAGCAAATATATACACAACAGGCATGCAAGATATACATTAAGCACAAACGTTGGCCCGACGCACAGATGCTCAGGGCCCATCAGAAACTAAAGCAGAATACCCCACCCCCGACCTAAAAGGTTACATTGTCCTCAATGTAATAGATCATGTAAAACAGGACAAATGCATAAGGAAAGAATAGAAACTTCCCTGAATTAAAGCTCGTGGGTGGTGAATCACGTTTACATACAAATAAAAGGTCTCGCTTTGGTACCGCCAATCCTAAAAAGAAACAAAACAATCAAACAAGAATCAAAAGCAACTAATCAAAATAACATTAACTAAGAAAAGAAATGACAGAAAGCAGTAACCTTATTAGGTGCAAATGTTTAAGGTCGTTTGCTCGACCAGATTCTCCTCGCTTTTCATCTGAAATCGATCTCTTTGATTTTCATTGACTAAAGTAAACATACAATCTTACCAGACAATGCACCATCAAGTCTCCAACTTCCCACAATCCTATTTTACCTACATTTGTGCCAACTGAAAACAAAATTTTCTTCATTATTTGACAATTTTAATGTGAATATCAAAATAAAGAAACATACAATCTACAACTACATTGTTCCATTGGTAGCCTAAAACCAAAAAAATAAAATTATACAAAATAAATTTAAATATACCAATAGCAGAGTTTGTTGGACTTGATGAAAATCCATGCACATTGGAGGTGACCATTGATTCGGTGTTCGCATAACAGTCTTTGGCGAATCATGACCATGATCAGCAAATGATACGGTTAAGTTGTTTGTGGTTTGGTCCCTTCGTTTCTCCAAGGTTGTCTCCACCTGTTTAAGTTGCATGTTCCACTCACTAACAAATTACCAAAAAAACATGTCCCCTAATCATCTGAGCAAAGAAAGCCAAATGCCCCATGATAGCAACATTTACATTATACTCATCAGAAGGCAATGACTAGTGTAGAACAAATGCACAGTGCTTAGTTAATTCAATTCCAAGACAAAAGAAGGCATTAAATGAAAGAAGCAGTGGCCTAGTTTGCAAACAAGAGAAAATGAATGGTCATCTGCGGTTTGTAAATTTTTTTTTTGGTAGAAGAACAAAGAAATGTGGCCATGACCCACATCAATACTGGCCGAAAGGGTCAAGTAGAAAAGTCAATGGAGGAAGAACAACAAAAATGAAGGCCAAATTGAAGAGAAAATCAACTGGGTTTCTGATGTAAAAAAAAAAGAAACAAGCATTTCCATAACTCCAGTCAGAGAAAACACACATTTCCATCTAAAAAAACACAGAAAGGGAGAGTAAGTACACAATTGCCTTCAGCAAAACACTAGAATTTCAGAACAATTTTTCTTCATCGACACATATTACAAGATCACATACAAACTCAGTAAAGAAAGACCAAGAAAGTTACCCAAATCCAAATTCAATCCATTTTAGAATTTCAGAACAATTCGAAAGCGGTGAAGAAAGAACAAGAAGACTAAGTAAAGAAAGTTACCCAAATCCGACAAATAGATTGAAGAGATCGATGCCGAGACGGCGGAAACCCAGAAAGAAAACTACGACGGTGAAGTCGAAGGGGGGAAAGAGAGGCCCAGATGAAGAAGAAGAAGAAAACAATTTAACGGAAGTGGTGGTTCAAAGAGCGACAAGAATCTCCGTGTTGGTGTGGCTCTGTGCGGACGAGCCGCATATCTCGGCCATATCGACGCGCTTTGTGAACTAGGTCACTGCCTTCAAGACGGTTACGGCGTCGCTGAAAACACATCCGAGGGACGTCGTCTCCTAATCGAAGCCAACGCGCGTGAGCTCGAGTCCATAACAAAATCCTCCCTCCGCCGTCTCAATTGCTCGGGCGACCACCTGTCTCCAACGGATTCCGCCGGATCGCTCCTAAGTGACTACGGTTGCAACATTCCGGCGCCGGAGGCTCATCCGGTAAACCAATTTCTAAGAGATTGGTTCGCATCGGGCTGTGGATTTATCGCTGAAGGACTGAGGCTTTGA

mRNA sequence

ATGAGACCCAATGAGGAGACAAATCAAAAGTTTCCAAAGACAATCTTGCACAAGAGAGTTTCTATCCCACCTAAAGAAGACTTTACTAACCCGGGATTGGTTTACTTAACTCTCATCCTATCTTCCCCCTACACTGGCACTAAGAGCGACAAGAATCTCCGTGTTGGTGTGGCTCTGTGCGGACGAGCCGCATATCTCGGCCATATCGACGCGCTTTGTGAACTAGGTCACTGCCTTCAAGACGGTTACGGCGTCGCTGAAAACACATCCGAGGGACGTCGTCTCCTAATCGAAGCCAACGCGCGTGAGCTCGAGTCCATAACAAAATCCTCCCTCCGCCGTCTCAATTGCTCGGGCGACCACCTGTCTCCAACGGATTCCGCCGGATCGCTCCTAAGTGACTACGGTTGCAACATTCCGGCGCCGGAGGCTCATCCGGTAAACCAATTTCTAAGAGATTGGTTCGCATCGGGCTGTGGATTTATCGCTGAAGGACTGAGGCTTTGA

Coding sequence (CDS)

ATGAGACCCAATGAGGAGACAAATCAAAAGTTTCCAAAGACAATCTTGCACAAGAGAGTTTCTATCCCACCTAAAGAAGACTTTACTAACCCGGGATTGGTTTACTTAACTCTCATCCTATCTTCCCCCTACACTGGCACTAAGAGCGACAAGAATCTCCGTGTTGGTGTGGCTCTGTGCGGACGAGCCGCATATCTCGGCCATATCGACGCGCTTTGTGAACTAGGTCACTGCCTTCAAGACGGTTACGGCGTCGCTGAAAACACATCCGAGGGACGTCGTCTCCTAATCGAAGCCAACGCGCGTGAGCTCGAGTCCATAACAAAATCCTCCCTCCGCCGTCTCAATTGCTCGGGCGACCACCTGTCTCCAACGGATTCCGCCGGATCGCTCCTAAGTGACTACGGTTGCAACATTCCGGCGCCGGAGGCTCATCCGGTAAACCAATTTCTAAGAGATTGGTTCGCATCGGGCTGTGGATTTATCGCTGAAGGACTGAGGCTTTGA

Protein sequence

MRPNEETNQKFPKTILHKRVSIPPKEDFTNPGLVYLTLILSSPYTGTKSDKNLRVGVALCGRAAYLGHIDALCELGHCLQDGYGVAENTSEGRRLLIEANARELESITKSSLRRLNCSGDHLSPTDSAGSLLSDYGCNIPAPEAHPVNQFLRDWFASGCGFIAEGLRL

Homology

[Close]

BLAST of Lag0024160 vs. NCBI nr
Match: XP_038894785.1 (F-box protein At1g67340 [Benincasa hispida])

HSP 1 Score: 210.7 bits (535), Expect = 9.8e-51
Identity = 104/136 (76.47%), Postives = 113/136 (83.09%), Query Frame = 0


Query: 33  LVYLTLILSSPYTGTKSDKNLRVGVALCGRAAYLGHIDALCELGHCLQDGYGVAENTSEG 92
           L  L ++  +   G+KSDKNLR GVALCGRAAYLGHIDAL ELGHCLQDGYGV +N SEG
Sbjct: 134 LYSLAIVQFNGSGGSKSDKNLRAGVALCGRAAYLGHIDALRELGHCLQDGYGVPQNASEG 193

Query: 93  RRLLIEANARELESITKSSLRRLNCSGDHLSPTDSAGSLLSDYGCNIPAPEAHPVNQFLR 152
           RRLLIEANAREL SIT SSLRRL+CSGD  S  DS GSLLSD+GCN PA EAHP N+FLR
Sbjct: 194 RRLLIEANARELTSITNSSLRRLHCSGDLPSAMDSGGSLLSDFGCNFPAAEAHPANRFLR 253

Query: 153 DWFASGCGFIAEGLRL 169
           DWFASG GF+AEGLRL
Sbjct: 254 DWFASGRGFVAEGLRL 269

[Close]

BLAST of Lag0024160 vs. NCBI nr
Match: XP_022994416.1 (F-box protein At5g50450-like [Cucurbita maxima])

HSP 1 Score: 210.7 bits (535), Expect = 9.8e-51
Identity = 106/136 (77.94%), Postives = 113/136 (83.09%), Query Frame = 0


Query: 33  LVYLTLILSSPYTGTKSDKNLRVGVALCGRAAYLGHIDALCELGHCLQDGYGVAENTSEG 92
           L  L ++  +   G+KSDKNLR GVALCGRAA LGHIDAL ELGHCLQDGYGVA+N SEG
Sbjct: 134 LYSLAIVQFNGSGGSKSDKNLRAGVALCGRAACLGHIDALRELGHCLQDGYGVAQNASEG 193

Query: 93  RRLLIEANARELESITKSSLRRLNCSGDHLSPTDSAGSLLSDYGCNIPAPEAHPVNQFLR 152
           RRLLIEANAREL SIT SSLRRLNCS D  S TDS+GSLLSD+G NIPAPE HP NQFLR
Sbjct: 194 RRLLIEANARELASITNSSLRRLNCSVDRPSTTDSSGSLLSDFGYNIPAPEVHPANQFLR 253

Query: 153 DWFASGCGFIAEGLRL 169
           DWF SG GFIAEGLRL
Sbjct: 254 DWFTSGRGFIAEGLRL 269

[Close]

BLAST of Lag0024160 vs. NCBI nr
Match: XP_022955215.1 (F-box protein At5g50450 [Cucurbita moschata] >XP_023542705.1 F-box protein At5g50450 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 209.5 bits (532), Expect = 2.2e-50
Identity = 105/136 (77.21%), Postives = 113/136 (83.09%), Query Frame = 0


Query: 33  LVYLTLILSSPYTGTKSDKNLRVGVALCGRAAYLGHIDALCELGHCLQDGYGVAENTSEG 92
           L  L ++  +   G+KSDKNLR GVALCGRAA LGHIDAL ELGHCLQDGYGVA+N SEG
Sbjct: 134 LYSLAIVQFNGSGGSKSDKNLRAGVALCGRAACLGHIDALRELGHCLQDGYGVAQNASEG 193

Query: 93  RRLLIEANARELESITKSSLRRLNCSGDHLSPTDSAGSLLSDYGCNIPAPEAHPVNQFLR 152
           RRLLIEANAREL SIT SSLRRLNCS D  + TDS+GSLLSD+G NIPAPE HP NQFLR
Sbjct: 194 RRLLIEANARELASITNSSLRRLNCSVDRPTTTDSSGSLLSDFGYNIPAPEVHPANQFLR 253

Query: 153 DWFASGCGFIAEGLRL 169
           DWF SG GFIAEGLRL
Sbjct: 254 DWFTSGRGFIAEGLRL 269

[Close]

BLAST of Lag0024160 vs. NCBI nr
Match: KAG6573130.1 (F-box protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012315.1 F-box protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 209.5 bits (532), Expect = 2.2e-50
Identity = 105/136 (77.21%), Postives = 113/136 (83.09%), Query Frame = 0


Query: 33  LVYLTLILSSPYTGTKSDKNLRVGVALCGRAAYLGHIDALCELGHCLQDGYGVAENTSEG 92
           L  L ++  +   G+KSDKNLR GVALCGRAA LGHIDAL ELGHCLQDGYGVA+N SEG
Sbjct: 134 LYSLAIVQFNGSGGSKSDKNLRAGVALCGRAACLGHIDALRELGHCLQDGYGVAQNASEG 193

Query: 93  RRLLIEANARELESITKSSLRRLNCSGDHLSPTDSAGSLLSDYGCNIPAPEAHPVNQFLR 152
           RRLLIEANAREL SIT SSLRRLNCS D  + TDS+GSLLSD+G NIPAPE HP NQFLR
Sbjct: 194 RRLLIEANARELASITNSSLRRLNCSVDRPTTTDSSGSLLSDFGYNIPAPEVHPANQFLR 253

Query: 153 DWFASGCGFIAEGLRL 169
           DWF SG GFIAEGLRL
Sbjct: 254 DWFTSGRGFIAEGLRL 269

[Close]

BLAST of Lag0024160 vs. NCBI nr
Match: XP_008439699.1 (PREDICTED: F-box protein At1g67340 [Cucumis melo] >KAA0055331.1 F-box protein [Cucumis melo var. makuwa] >TYJ99256.1 F-box protein [Cucumis melo var. makuwa])

HSP 1 Score: 209.1 bits (531), Expect = 2.9e-50
Identity = 104/136 (76.47%), Postives = 111/136 (81.62%), Query Frame = 0


Query: 33  LVYLTLILSSPYTGTKSDKNLRVGVALCGRAAYLGHIDALCELGHCLQDGYGVAENTSEG 92
           L  L ++  +   G+KSDKNLR GVALCGRAAYLGHIDAL ELGHCLQDGYGV +N SEG
Sbjct: 134 LYSLAIVQFNGSGGSKSDKNLRAGVALCGRAAYLGHIDALRELGHCLQDGYGVPQNASEG 193

Query: 93  RRLLIEANARELESITKSSLRRLNCSGDHLSPTDSAGSLLSDYGCNIPAPEAHPVNQFLR 152
           RRLLIEANAREL  IT SSLRRL+CS    S TDS GSLLSD+GCN PAPEAHP NQFLR
Sbjct: 194 RRLLIEANARELAYITNSSLRRLHCSSHRQSATDSGGSLLSDFGCNFPAPEAHPANQFLR 253

Query: 153 DWFASGCGFIAEGLRL 169
           DWFASG G IAEGLRL
Sbjct: 254 DWFASGRGSIAEGLRL 269

[Close]

BLAST of Lag0024160 vs. ExPASy Swiss-Prot
Match: Q9FYF9 (F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.8e-34
Identity = 78/147 (53.06%), Postives = 98/147 (66.67%), Query Frame = 0


Query: 31  PGLVYLTLILSSPYTGTKSDKNLRVGVALCGRAAYLGHIDALCELGHCLQDGYGVAENTS 90
           P L  L +I  +   G+K+DK+LR GVALC RAA+LGH+DAL ELGHCLQDGYGV +N S
Sbjct: 155 PALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLGHVDALRELGHCLQDGYGVPQNVS 214

Query: 91  EGRRLLIEANARELESITKSSLRR----LNCSGDHLSPTDSAGS----LLSDYGCNIPAP 150
           EGRR L++ANAREL ++  S ++     L+ S        + G     LLSD+GCN+PAP
Sbjct: 215 EGRRFLVQANARELAAVLSSGIQARSTWLSLSQPPPPVVPNHGQQTCPLLSDFGCNVPAP 274

Query: 151 EAHPVNQFLRDWFA-SGCGFIAEGLRL 169
           E HP N+FL DWFA  G     +GLRL
Sbjct: 275 ETHPANRFLADWFAVRGGDCPGDGLRL 301

[Close]

BLAST of Lag0024160 vs. ExPASy Swiss-Prot
Match: Q9FK27 (F-box protein At5g50450 OS=Arabidopsis thaliana OX=3702 GN=At5g50450 PE=2 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.4e-31
Identity = 75/138 (54.35%), Postives = 93/138 (67.39%), Query Frame = 0


Query: 31  PGLVYLTLILSSPYTGTKSDKNLRVGVALCGRAAYLGHIDALCELGHCLQDGYGVAENTS 90
           P L  L++I  +   G+K+DKNLR GVALC R+AYLGH+DAL ELGHCLQDGYGV  + S
Sbjct: 133 PALYSLSVIQFNGSGGSKTDKNLRAGVALCARSAYLGHVDALRELGHCLQDGYGVPRDVS 192

Query: 91  EGRRLLIEANARELESITKSSLRRLNCSGDHLSPTDSAGSLLSDYGCNIPAPEAHPVNQF 150
           EGRRLLI+ANAREL    +S L     SGD           L+D    +P  E HPVN+F
Sbjct: 193 EGRRLLIQANARELACSLRSYLSLK--SGDE-------NETLTDLSV-VPVQEIHPVNRF 252

Query: 151 LRDWFASGCGFIAEGLRL 169
           L++WF+SG   +AEGLR+
Sbjct: 253 LKEWFSSGRVDLAEGLRM 260

The following BLAST results are available for this feature:

BLAST of Lag0024160 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038894785.1	9.8e-51	76.47	F-box protein At1g67340 [Benincasa hispida]	[more]
XP_022994416.1	9.8e-51	77.94	F-box protein At5g50450-like [Cucurbita maxima]	[more]
XP_022955215.1	2.2e-50	77.21	F-box protein At5g50450 [Cucurbita moschata] >XP_023542705.1 F-box protein At5g5...	[more]
KAG6573130.1	2.2e-50	77.21	F-box protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012315.1 F-b...	[more]
XP_008439699.1	2.9e-50	76.47	PREDICTED: F-box protein At1g67340 [Cucumis melo] >KAA0055331.1 F-box protein [C...	[more]

BLAST of Lag0024160 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FYF9	1.8e-34	53.06	F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1	[more]
Q9FK27	1.4e-31	54.35	F-box protein At5g50450 OS=Arabidopsis thaliana OX=3702 GN=At5g50450 PE=2 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 32..124 e-value: 5.2E-6 score: 28.0
None	No IPR available	PANTHER	PTHR46758:SF9	HCP FAMILY PROTEIN WITH MYND-TYPE ZINC FINGER PROTEIN	coord: 32..168
None	No IPR available	SUPERFAMILY	81901	HCP-like	coord: 44..97
IPR044508	F-box protein At5g50450/At1g67340-like	PANTHER	PTHR46758	MYND DOMAIN-CONTAINING	coord: 32..168

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0024160.1	Lag0024160.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0005515	protein binding