Lag0024144 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0024144
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Transposon Tf2-1 polyprotein isoform X1
Location	chr10: 778292 .. 782471 (+)
RNA-Seq Expression	Lag0024144
Synteny	Lag0024144

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGGAAGACTTGTGAAAAATGAGAACTGGAAAGACGAGGTCAAGAATGAACGTTTGATGAAATATTTGGATAAACTACTTTCTTGGCGGAGGAGACCAAAAGACATGGGGTATTTTCATCCACTAAATCTGTATTCAAGGATCAACCACTTTTCTTCAATTGCAAAACAAAGGGTAGGTTGCAATAAAATAATTTTTAATATCTTTAATGGGAGGCCTGGAGGCAAGATCTTCGCAACGAGAGGAATCAAGCAAGAAGGTCCTTTATCGCCTTTCCTCTTTCTTCTACTGCAAAACGTCCTCAGTAGACTAGTCTCGATTGGAGTGGATAAAGGAGCCTTTGAGGGCTTTAAGGGAGTTATCGAGAGCTTTAAGATTGGCAAACACTTAGTTCACTTATACCACATTTAATTTGCTAATATCTTTCCTTTTCAAAGCCATTATTGGTCTTAGAATTAAAAGGGTGAAAAGCTCTAACTTTGGTTTAAATTGTTTTCCATCCTATTAGCACCTTAGGTTGCATCAGTGGGTTGGAGACTGGGAAGAGGGTGGATCCCATTTGGTTAAATGGGAGATGGTGGTGAATCCCGTCCAGCTTAAAGGTTCGTGTACTGAGAGTTTGTGTTAACACAATGAGGCTCTCTTGACTCTGTGGTTGTCGCGATTCTTTACAGAAACTGACAGCCTCTGGTATAGAATGATTGTGAGTGGATATGACTCACCTTTTTGGAGTGGTTATCGAAGCGCCTTAGCAAAACCTTTAGAAAGCTAATTCTTATTGATTTCCTTCATTTTCTCAATTTGTTAGATGTTATGTTGCGGAAGGTTTCAAAGTATACTTTTAGAGGACCATTGGGTGGGTGATAAACCTTTGTGCATTTTATTGCTTCAATGAAATGTTGTTCCTATACGATGAAATGTTGGTTTAAATGTTGTGATTTAGTTGCTCTTCAGTGTTTCATTATCGACATTTTCGGTAGGTTAATGCAATTAAAGCCCTAATTTCAAAGATTTAGTTGTAAGGATTTATTCAAGAGTTTTAAATAGCAGGAGTCTTTCATGGTTTGATTGTTTTGATGTTGCTTGTTTAAATGCCTTTTCTTGATGCGCTCTTTCCAAGACTTTTTCTAATTTTTCCATGATAGATGTTTATTTACATTAGGCTTTTTCTAATTTTTCCATGATAGAAGTTTATTTACATTGGGATGTTTTTATTTCTACCTTGTAATTTCAGTTTTTCTTTTATTTTATTTCCTTCGTGGAGTTTGGAATTTTCAGCATTGGCCTCTTTTCATTTCTTTAATGAAAAGTTTCACCTCTTGTTTCGAAAAGATTTATTAGCTGTAAGGTATTTCTTTTACTTAAGATAGACACTTGTAACCATAGTGAATATAAAAGAATTATTCTATTAAATTTTTAATTTTACTTCTGAACATTAGCATCATATTAGAGCAGAAAATAAAACATCAAAACATCCAAAGCGTAACCGTAGTTGCCAACCTAGTGGGAGGAGTTGATGGAGTTTATGGGTGGGATCATAAGTTGGAAGTAGGATCGTAAGAAGGATCTGATGGAGTTCATGGAGTTGAAATGCGATTATGATGGAGAACTATAGTATCCACCACCTTCAAATAGAGGATTTAATGGAGTTGATTGGGTTGGTGTAGGATCATGACTCGAAGGGTTGTGGTACCCACGATCTTGAGTATTCAATGGAGTTGGATCATATGGTGGGTTATGGTATCCACCACTATCAGATAGAGGTTTAGAGAGTTGATGGGTTGGATAATGTGTATGAGGGTATGAGGGTTGTGGTATCCTCAATCACTGGAAGGAGTTTTGGATTGGATAGGAGCGTATTAATTTAGCATATCTACATTTACTATGTGTTTGTTTCAAATTAGTGCAGCAACTTCTTATTTATTGTTGCTCTAAAGTTGTTTGTGACTGTTAATTTTAAGTGGTTAGTTTTCTATTATTGAAAGAATAGATGCAATGGCCATTTAGCCAAATGACAACCAGCTGCATCATAGAGGCACAAACAATACAGTGCAACCTTTTCATCTAAAGAGGCGACCACCAATTGAGGGGAAAAGGCCCCAAGATCGTGCAAGAAACAATCCTCCGACAATTCAATACCATTTCCACTACTACTACATGGATGAAGAACAATTATTTCATCAAAGACCACATCAAAACCTTGGAATATTACCCAAAAGAAATATCAATAAACCCGTTTCATCAAAGACCACATCAAAACCAAGGAATGAAGATCCCAGATTCCTAGGACTTCATAGTTCAAGTGATTAAAGATGATCCAATTTATAAGGGAAACCTTGATTATCAAGAACAAAGGAGGAAAGAAACACTAAACTACCCTCAACAACAGATGAAGATGATCCACTAAATGTTACAACTAAGTTATGAAGATGATCCATTTTAGTGGTAAGTTTGATTAGGCCAAAGAGGTAGAATCTTTCTTCACCGTGTCCTCCACGTATCCATATCTTAGTTTTTTAGAAATTGACGTATCGCCGTGTCCTGTCATGTCTGTGTCCGTGTCCCGTGTCCATGTCCATGCTTCTTAGAGGATAACCAATGGCCGAAACTAGAGAAAGTGTCTTCGAATTGAAGAGGATCAATATTGATGTCTTGTAGAAACAATATCCAACACCAAGGATAGCTAGAAGATATGGTTGAGCTTTGGCTGACCCATTTTATATGTCTTACCCTTAAATTTAAAAAATATTTATAATCGTAATCCAACTGACTCTTTCTCTCACTATGTAGAAGGTGGGGGTGAGGAGTGAGTGGGTTCAGCATTGCCTGGTGGCAATGGCAAAAGCAGAAAACCCTAAAGGATTTTGGAGAAGAAGAATATTGGAATCGGCGGTCATCTTCTTTTAGGTTTTAGAGAATGTCAAAGGCAAATTCAATTTTATCCCCAAAAGCTTTCAAAGCAAAAAGAACAGCAACCTTCATTCCAGAAGGGTTTAAAGGAAAGGAATGGTCTCTATTGGCAAGGGAACTACCCACCCCCCACCCCCTCGAATTCTATCTAAAAGCAAAGGAATGGTCTCTGTTGGCATTTGAAGCAGCCCGTCGAACATGGATATATTGGTTAGAGAAGGAAATAAAGAGAGTTTGAGGGATTTATGCATCCATAAGTTAGACTTGAAGCTCATGGTCGAACGATGTCGATTAACATTCTCTGAGGGTTGTCTTTTTAGTATTTTGTGGATTATATGCTTATTTTGGTTGTGAACTAGTCTCTGTTTGTTAATGAGATAGGTGGGAGAGTCCACCCTCTCGAATGGTGGTTAACTTCATGTGTGGATGTTGAGATTGTATTTTGTGAACTGTGTAACTATTTTTGGTGTATCGTTTAAGTCGAATCCAGAAGTATCTTATCAAAGTGGTATCAGAGCGTTCATCTTGGGGAAGACACGAGCCACGTCTCAAGGCCAGATGGAAGAATGGATGGACAATCCGAGAAGAGCGTTGAGGCCATGAAGGAAAATATACCAAAGATCGAAAGGACAGTAGCCAAGATTAACAAGAATATTGAACGTTTGTTTAAGATCCTGGAAGATCAGAGAGAAACAATAGAACTTTTAGAGGGTTAGAGAGGGATCCCTCGGAGGTTTGGTCCCTTGTTAGATATAATGTTTCTCTTTGGGCGTCGGTGACGCGTTTATTTTGTAATTATTCCTTAGGTCTCATCAGTTTGGATTGGAGCCCCTTCATTTAATAGGGCTCCCTCTTTCTCGGGCTGGTTTTTTTGTATGGCCTTGTATTCTTTCATTTTTTCTCAATGAAAGCATGGTCTTTTATAAAAAAAAAAAGATCCTGGAAGATCAGAGGCAACCAACGGTTGAGACTCAGAAACGGGCAACGAACCAGCAAAGAGACCGGCCAGAAGCAAAAAAATCCTGAATCGAAGAGAGGGTCCTTGAGTGGACAAGAAATGCAGAAAAGAGAGATCTATTTTGAAAAACACAAGTTAAAGAAAAACGACATGCCCATTTTTGGAGGTTCCCCGGATGATTGGTTGTTTCGGGCGGCACAATATTTCACTATTCAAAGGTTGTCTGATGAAGAAAAAGTGCTGGCGGCGGCTATTTCCTTCACTGAGGCGGTGTTGCGATGGCTTCAATGGGGCAAGGAACCGTTCTAG

mRNA sequence

ATGGAGGGAAGACTTGTGAAAAATGAGAACTGGAAAGACGAGGTCAAGAATGAACGTTTGATGAAATATTTGGATAAACTACTTTCTTGGCGGAGGAGACCAAAAGACATGGGGTATTTTCATCCACTAAATCTGTATTCAAGGATCAACCACTTTTCTTCAATTGCAAAACAAAGGCACCTTAGGTTGCATCAGTGGGTTGGAGACTGGGAAGAGGGTGGATCCCATTTGGTTAAATGGGAGATGGTGGTGAATCCCGTCCAGCTTAAAGAAACTGACAGCCTCTGGTATAGAATGATTGATCATGACTCGAAGGGTTGTGGTACCCACGATCTTGAGTATTCAATGGAGTTGGATCATATGGTGGGTTATGTCGAATCCAGAAGTATCTTATCAAAGTGGTATCAGAGCGTTCATCTTGGGGAAGACACGAGCCACGTCTCAAGGCCAGATGGAAGAATGGATGGACAATCCGAGAAGAGCGTTGAGGCCATGAAGGAAAATATACCAAAGATCGAAAGGACAGTAGCCAAGATTAACAAGAATATTGAACGTTTGTTTAAGATCCTGGAAGATCAGAGAGAAACAATAGAACTTTTAGAGGCATGGTCTTTTATAAAAAAAAAAAGATCCTGGAAGATCAGAGGCAACCAACGGTTGAGACTCAGAAACGGGCAACGAACCAGCAAAGAGACCGGCCAGAAGCAAAAAAATCCTGAATCGAAGAGAGGGTCCTTGAGTGGACAAGAAATGCAGAAAAGAGAGATCTATTTTGAAAAACACAAGTTAAAGAAAAACGACATGCCCATTTTTGGAGGTTCCCCGGATGATTGGTTGTTTCGGGCGGCACAATATTTCACTATTCAAAGGTTGTCTGATGAAGAAAAAGTGCTGGCGGCGGCTATTTCCTTCACTGAGGCGGTGTTGCGATGGCTTCAATGGGGCAAGGAACCGTTCTAG

Coding sequence (CDS)

ATGGAGGGAAGACTTGTGAAAAATGAGAACTGGAAAGACGAGGTCAAGAATGAACGTTTGATGAAATATTTGGATAAACTACTTTCTTGGCGGAGGAGACCAAAAGACATGGGGTATTTTCATCCACTAAATCTGTATTCAAGGATCAACCACTTTTCTTCAATTGCAAAACAAAGGCACCTTAGGTTGCATCAGTGGGTTGGAGACTGGGAAGAGGGTGGATCCCATTTGGTTAAATGGGAGATGGTGGTGAATCCCGTCCAGCTTAAAGAAACTGACAGCCTCTGGTATAGAATGATTGATCATGACTCGAAGGGTTGTGGTACCCACGATCTTGAGTATTCAATGGAGTTGGATCATATGGTGGGTTATGTCGAATCCAGAAGTATCTTATCAAAGTGGTATCAGAGCGTTCATCTTGGGGAAGACACGAGCCACGTCTCAAGGCCAGATGGAAGAATGGATGGACAATCCGAGAAGAGCGTTGAGGCCATGAAGGAAAATATACCAAAGATCGAAAGGACAGTAGCCAAGATTAACAAGAATATTGAACGTTTGTTTAAGATCCTGGAAGATCAGAGAGAAACAATAGAACTTTTAGAGGCATGGTCTTTTATAAAAAAAAAAAGATCCTGGAAGATCAGAGGCAACCAACGGTTGAGACTCAGAAACGGGCAACGAACCAGCAAAGAGACCGGCCAGAAGCAAAAAAATCCTGAATCGAAGAGAGGGTCCTTGAGTGGACAAGAAATGCAGAAAAGAGAGATCTATTTTGAAAAACACAAGTTAAAGAAAAACGACATGCCCATTTTTGGAGGTTCCCCGGATGATTGGTTGTTTCGGGCGGCACAATATTTCACTATTCAAAGGTTGTCTGATGAAGAAAAAGTGCTGGCGGCGGCTATTTCCTTCACTGAGGCGGTGTTGCGATGGCTTCAATGGGGCAAGGAACCGTTCTAG

Protein sequence

MEGRLVKNENWKDEVKNERLMKYLDKLLSWRRRPKDMGYFHPLNLYSRINHFSSIAKQRHLRLHQWVGDWEEGGSHLVKWEMVVNPVQLKETDSLWYRMIDHDSKGCGTHDLEYSMELDHMVGYVESRSILSKWYQSVHLGEDTSHVSRPDGRMDGQSEKSVEAMKENIPKIERTVAKINKNIERLFKILEDQRETIELLEAWSFIKKKRSWKIRGNQRLRLRNGQRTSKETGQKQKNPESKRGSLSGQEMQKREIYFEKHKLKKNDMPIFGGSPDDWLFRAAQYFTIQRLSDEEKVLAAAISFTEAVLRWLQWGKEPF

Homology

[Close]

BLAST of Lag0024144 vs. NCBI nr
Match: KAA0063375.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 72.4 bits (176), Expect = 7.9e-09
Identity = 57/194 (29.38%), Postives = 99/194 (51.03%), Query Frame = 0


Query: 126 ESRSILSKWYQSVHLGEDTSHVSRPDGRMDGQSEKSVEAMKENIPKIERTVAKINKNIER 185
           E  S+L+ WYQS+  G++ S     + R++     +VE   + +P IE  +A + K+I  
Sbjct: 25  EQGSVLTFWYQSIIPGQNMSTTKATEERLE-----AVEMGMKRLPMIEENLALLAKSITE 84

Query: 186 LFKILEDQRETIELLEAWSFIKKKRSWKIRGNQRLRLRNGQRTSKETGQKQKNPESKRG- 245
           +   ++ Q +  ++      I K     +R +  +R      TSK T  +  +P +  G 
Sbjct: 85  MNSQIDKQAQQQQV------ILKYIEEIVRDDSPVRRTEEGSTSKVTMAEATSPATTEGP 144

Query: 246 SLSGQEMQKREIYFEKHKLKKNDMPIFGGS-PDDWLFRAAQYFTIQRLSDEEKVLAAAIS 305
            +  +  ++R +  ++ K KK +MP+F G+ PD WLFRA +YF I  L+D E++  A IS
Sbjct: 145 KIDVKTEEERPV--DRSKFKKVEMPVFDGTDPDSWLFRADRYFKIHNLTDSERLTVAVIS 204

Query: 306 FTEAVLRWLQWGKE 318
           F    L W +  +E
Sbjct: 205 FDGPALDWYRSQEE 205

[Close]

BLAST of Lag0024144 vs. NCBI nr
Match: TYK24981.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 72.0 bits (175), Expect = 1.0e-08
Identity = 57/194 (29.38%), Postives = 99/194 (51.03%), Query Frame = 0


Query: 126 ESRSILSKWYQSVHLGEDTSHVSRPDGRMDGQSEKSVEAMKENIPKIERTVAKINKNIER 185
           E  S+L+ WYQS+  G++ S     + R++     +VE   + +P IE  +A + K+I  
Sbjct: 66  EQGSVLTFWYQSIIPGQNMSSTKATEERLE-----AVEMGMKRLPMIEENLALLAKSITE 125

Query: 186 LFKILEDQRETIELLEAWSFIKKKRSWKIRGNQRLRLRNGQRTSKETGQKQKNP-ESKRG 245
           +   ++ Q +  ++      I K     +R +  +R      TSK T  +   P  ++  
Sbjct: 126 MNSQIDKQAQQQQV------ILKYIEEIVRDDSPVRRTEEGSTSKVTMAEATYPATTEEP 185

Query: 246 SLSGQEMQKREIYFEKHKLKKNDMPIFGGS-PDDWLFRAAQYFTIQRLSDEEKVLAAAIS 305
            +  +  ++R +  ++ K KK +MP+FGG+ PD WLFRA +YF I  L+D E++  A IS
Sbjct: 186 KIDVKTEEERPV--DRSKFKKVEMPVFGGTDPDSWLFRADRYFKIHNLTDSERLTVAVIS 245

Query: 306 FTEAVLRWLQWGKE 318
           F    L W +  +E
Sbjct: 246 FDGPALDWYRSQEE 246

[Close]

BLAST of Lag0024144 vs. NCBI nr
Match: TYK08591.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 70.1 bits (170), Expect = 3.9e-08
Identity = 57/200 (28.50%), Postives = 99/200 (49.50%), Query Frame = 0


Query: 120 HMVGYVESRSILSKWYQSVHLGEDTSHVSRPDGRMDGQSEKSVEAMKENIPKIERTVAKI 179
           H     E  S+L+ WYQS+  G++ S     + R++     +VE   + +P IE  +A +
Sbjct: 582 HSYNRKEQGSVLTFWYQSIIPGQNMSTTKATEERLE-----AVEMGMKRLPMIEENLALL 641

Query: 180 NKNIERLFKILEDQRETIELLEAWSFIKKKRSWKIRGNQRLRLRNGQRTSKETGQKQKNP 239
            K+I  +   ++ Q +  ++      I K     +R +  +R      TSK T  +   P
Sbjct: 642 AKSITEMNSQIDKQAQQQQV------ILKYIEEIVRDDSPVRRTEEGSTSKVTMAEATYP 701

Query: 240 -ESKRGSLSGQEMQKREIYFEKHKLKKNDMPIFGGS-PDDWLFRAAQYFTIQRLSDEEKV 299
             ++   +  +  ++R +  ++ K KK +MP+F G+ PD WLFRA +YF I  L+D E++
Sbjct: 702 ATTEEPKIDVKTEEERPV--DRSKFKKVEMPVFDGTDPDSWLFRADRYFKIHNLTDSERL 761

Query: 300 LAAAISFTEAVLRWLQWGKE 318
             A ISF    L W +  +E
Sbjct: 762 TVAVISFDGPALDWYRSQEE 768

[Close]

BLAST of Lag0024144 vs. NCBI nr
Match: KAA0033982.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 70.1 bits (170), Expect = 3.9e-08
Identity = 57/200 (28.50%), Postives = 99/200 (49.50%), Query Frame = 0


Query: 120 HMVGYVESRSILSKWYQSVHLGEDTSHVSRPDGRMDGQSEKSVEAMKENIPKIERTVAKI 179
           H     E  S+L+ WYQS+  G++ S     + R++     +VE   + +P IE  +A +
Sbjct: 60  HSYNRKEQGSVLTFWYQSIIPGQNMSTTKATEERLE-----AVEMGMKRLPMIEENLALL 119

Query: 180 NKNIERLFKILEDQRETIELLEAWSFIKKKRSWKIRGNQRLRLRNGQRTSKETGQKQKNP 239
            K+I  +   ++ Q +  ++      I K     +R +  +R      TSK T  +   P
Sbjct: 120 AKSITEMNSQIDKQAQQQQV------ILKYIEEIVRDDSPVRRTEEGSTSKVTMAEATYP 179

Query: 240 -ESKRGSLSGQEMQKREIYFEKHKLKKNDMPIFGGS-PDDWLFRAAQYFTIQRLSDEEKV 299
             ++   +  +  ++R +  ++ K KK +MP+F G+ PD WLFRA +YF I  L+D E++
Sbjct: 180 ATTEEPKIDVKTEEERPV--DRSKFKKVEMPVFDGTDPDSWLFRADRYFKIHNLTDSERL 239

Query: 300 LAAAISFTEAVLRWLQWGKE 318
             A ISF    L W +  +E
Sbjct: 240 TVAVISFDGPALDWYRSQEE 246

[Close]

BLAST of Lag0024144 vs. NCBI nr
Match: KAA0038753.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 68.9 bits (167), Expect = 8.8e-08
Identity = 56/194 (28.87%), Postives = 98/194 (50.52%), Query Frame = 0


Query: 126 ESRSILSKWYQSVHLGEDTSHVSRPDGRMDGQSEKSVEAMKENIPKIERTVAKINKNIER 185
           E  S+L+ WYQS+  G++ S     + R++     +VE   + +P IE  +A + K+I  
Sbjct: 509 EQGSVLTFWYQSIIPGQNMSTTKATEERLE-----AVEMGMKRLPMIEENLALLAKSITE 568

Query: 186 LFKILEDQRETIELLEAWSFIKKKRSWKIRGNQRLRLRNGQRTSKETGQKQKNP-ESKRG 245
           +   ++ Q +  ++      I K     +R +  +R      TSK T  +   P  ++  
Sbjct: 569 MNSQIDKQAQQQQV------ILKYIEEIVRDDSPVRRTEEGSTSKVTMAEATYPATTEEP 628

Query: 246 SLSGQEMQKREIYFEKHKLKKNDMPIFGGS-PDDWLFRAAQYFTIQRLSDEEKVLAAAIS 305
            +  +  ++R +  ++ K KK +MP+F G+ PD WLFRA +YF I  L+D E++  A IS
Sbjct: 629 KIDVKTEEERPV--DRSKFKKVEMPVFDGTDPDSWLFRADRYFKIHNLTDSERLTVAVIS 688

Query: 306 FTEAVLRWLQWGKE 318
           F    L W +  +E
Sbjct: 689 FDGPALDWYRSQEE 689

[Close]

BLAST of Lag0024144 vs. ExPASy TrEMBL
Match: A0A5A7VBU7 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold508G00030 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 3.8e-09
Identity = 57/194 (29.38%), Postives = 99/194 (51.03%), Query Frame = 0


Query: 126 ESRSILSKWYQSVHLGEDTSHVSRPDGRMDGQSEKSVEAMKENIPKIERTVAKINKNIER 185
           E  S+L+ WYQS+  G++ S     + R++     +VE   + +P IE  +A + K+I  
Sbjct: 25  EQGSVLTFWYQSIIPGQNMSTTKATEERLE-----AVEMGMKRLPMIEENLALLAKSITE 84

Query: 186 LFKILEDQRETIELLEAWSFIKKKRSWKIRGNQRLRLRNGQRTSKETGQKQKNPESKRG- 245
           +   ++ Q +  ++      I K     +R +  +R      TSK T  +  +P +  G 
Sbjct: 85  MNSQIDKQAQQQQV------ILKYIEEIVRDDSPVRRTEEGSTSKVTMAEATSPATTEGP 144

Query: 246 SLSGQEMQKREIYFEKHKLKKNDMPIFGGS-PDDWLFRAAQYFTIQRLSDEEKVLAAAIS 305
            +  +  ++R +  ++ K KK +MP+F G+ PD WLFRA +YF I  L+D E++  A IS
Sbjct: 145 KIDVKTEEERPV--DRSKFKKVEMPVFDGTDPDSWLFRADRYFKIHNLTDSERLTVAVIS 204

Query: 306 FTEAVLRWLQWGKE 318
           F    L W +  +E
Sbjct: 205 FDGPALDWYRSQEE 205

[Close]

BLAST of Lag0024144 vs. ExPASy TrEMBL
Match: A0A5D3DMY9 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G00980 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 5.0e-09
Identity = 57/194 (29.38%), Postives = 99/194 (51.03%), Query Frame = 0


Query: 126 ESRSILSKWYQSVHLGEDTSHVSRPDGRMDGQSEKSVEAMKENIPKIERTVAKINKNIER 185
           E  S+L+ WYQS+  G++ S     + R++     +VE   + +P IE  +A + K+I  
Sbjct: 66  EQGSVLTFWYQSIIPGQNMSSTKATEERLE-----AVEMGMKRLPMIEENLALLAKSITE 125

Query: 186 LFKILEDQRETIELLEAWSFIKKKRSWKIRGNQRLRLRNGQRTSKETGQKQKNP-ESKRG 245
           +   ++ Q +  ++      I K     +R +  +R      TSK T  +   P  ++  
Sbjct: 126 MNSQIDKQAQQQQV------ILKYIEEIVRDDSPVRRTEEGSTSKVTMAEATYPATTEEP 185

Query: 246 SLSGQEMQKREIYFEKHKLKKNDMPIFGGS-PDDWLFRAAQYFTIQRLSDEEKVLAAAIS 305
            +  +  ++R +  ++ K KK +MP+FGG+ PD WLFRA +YF I  L+D E++  A IS
Sbjct: 186 KIDVKTEEERPV--DRSKFKKVEMPVFGGTDPDSWLFRADRYFKIHNLTDSERLTVAVIS 245

Query: 306 FTEAVLRWLQWGKE 318
           F    L W +  +E
Sbjct: 246 FDGPALDWYRSQEE 246

[Close]

BLAST of Lag0024144 vs. ExPASy TrEMBL
Match: A0A5A7SS61 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold400G00430 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.9e-08
Identity = 57/200 (28.50%), Postives = 99/200 (49.50%), Query Frame = 0


Query: 120 HMVGYVESRSILSKWYQSVHLGEDTSHVSRPDGRMDGQSEKSVEAMKENIPKIERTVAKI 179
           H     E  S+L+ WYQS+  G++ S     + R++     +VE   + +P IE  +A +
Sbjct: 60  HSYNRKEQGSVLTFWYQSIIPGQNMSTTKATEERLE-----AVEMGMKRLPMIEENLALL 119

Query: 180 NKNIERLFKILEDQRETIELLEAWSFIKKKRSWKIRGNQRLRLRNGQRTSKETGQKQKNP 239
            K+I  +   ++ Q +  ++      I K     +R +  +R      TSK T  +   P
Sbjct: 120 AKSITEMNSQIDKQAQQQQV------ILKYIEEIVRDDSPVRRTEEGSTSKVTMAEATYP 179

Query: 240 -ESKRGSLSGQEMQKREIYFEKHKLKKNDMPIFGGS-PDDWLFRAAQYFTIQRLSDEEKV 299
             ++   +  +  ++R +  ++ K KK +MP+F G+ PD WLFRA +YF I  L+D E++
Sbjct: 180 ATTEEPKIDVKTEEERPV--DRSKFKKVEMPVFDGTDPDSWLFRADRYFKIHNLTDSERL 239

Query: 300 LAAAISFTEAVLRWLQWGKE 318
             A ISF    L W +  +E
Sbjct: 240 TVAVISFDGPALDWYRSQEE 246

[Close]

BLAST of Lag0024144 vs. ExPASy TrEMBL
Match: A0A5D3C9P5 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3734G00120 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.9e-08
Identity = 57/200 (28.50%), Postives = 99/200 (49.50%), Query Frame = 0


Query: 120 HMVGYVESRSILSKWYQSVHLGEDTSHVSRPDGRMDGQSEKSVEAMKENIPKIERTVAKI 179
           H     E  S+L+ WYQS+  G++ S     + R++     +VE   + +P IE  +A +
Sbjct: 582 HSYNRKEQGSVLTFWYQSIIPGQNMSTTKATEERLE-----AVEMGMKRLPMIEENLALL 641

Query: 180 NKNIERLFKILEDQRETIELLEAWSFIKKKRSWKIRGNQRLRLRNGQRTSKETGQKQKNP 239
            K+I  +   ++ Q +  ++      I K     +R +  +R      TSK T  +   P
Sbjct: 642 AKSITEMNSQIDKQAQQQQV------ILKYIEEIVRDDSPVRRTEEGSTSKVTMAEATYP 701

Query: 240 -ESKRGSLSGQEMQKREIYFEKHKLKKNDMPIFGGS-PDDWLFRAAQYFTIQRLSDEEKV 299
             ++   +  +  ++R +  ++ K KK +MP+F G+ PD WLFRA +YF I  L+D E++
Sbjct: 702 ATTEEPKIDVKTEEERPV--DRSKFKKVEMPVFDGTDPDSWLFRADRYFKIHNLTDSERL 761

Query: 300 LAAAISFTEAVLRWLQWGKE 318
             A ISF    L W +  +E
Sbjct: 762 TVAVISFDGPALDWYRSQEE 768

[Close]

BLAST of Lag0024144 vs. ExPASy TrEMBL
Match: A0A5A7T725 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold92G003050 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 4.3e-08
Identity = 56/194 (28.87%), Postives = 98/194 (50.52%), Query Frame = 0


Query: 126 ESRSILSKWYQSVHLGEDTSHVSRPDGRMDGQSEKSVEAMKENIPKIERTVAKINKNIER 185
           E  S+L+ WYQS+  G++ S     + R++     +VE   + +P IE  +A + K+I  
Sbjct: 509 EQGSVLTFWYQSIIPGQNMSTTKATEERLE-----AVEMGMKRLPMIEENLALLAKSITE 568

Query: 186 LFKILEDQRETIELLEAWSFIKKKRSWKIRGNQRLRLRNGQRTSKETGQKQKNP-ESKRG 245
           +   ++ Q +  ++      I K     +R +  +R      TSK T  +   P  ++  
Sbjct: 569 MNSQIDKQAQQQQV------ILKYIEEIVRDDSPVRRTEEGSTSKVTMAEATYPATTEEP 628

Query: 246 SLSGQEMQKREIYFEKHKLKKNDMPIFGGS-PDDWLFRAAQYFTIQRLSDEEKVLAAAIS 305
            +  +  ++R +  ++ K KK +MP+F G+ PD WLFRA +YF I  L+D E++  A IS
Sbjct: 629 KIDVKTEEERPV--DRSKFKKVEMPVFDGTDPDSWLFRADRYFKIHNLTDSERLTVAVIS 688

Query: 306 FTEAVLRWLQWGKE 318
           F    L W +  +E
Sbjct: 689 FDGPALDWYRSQEE 689

The following BLAST results are available for this feature:

BLAST of Lag0024144 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0063375.1	7.9e-09	29.38	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK24981.1	1.0e-08	29.38	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK08591.1	3.9e-08	28.50	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0033982.1	3.9e-08	28.50	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0038753.1	8.8e-08	28.87	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Lag0024144 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0024144 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VBU7	3.8e-09	29.38	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3DMY9	5.0e-09	29.38	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7SS61	1.9e-08	28.50	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3C9P5	1.9e-08	28.50	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7T725	4.3e-08	28.87	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]

BLAST of Lag0024144 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 162..196
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 143..163
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 144..163
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 221..250
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 224..238

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0024144.1	Lag0024144.1	mRNA