Lag0024097 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0024097
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionCystatin domain-containing protein
Locationchr10: 496868 .. 497502 (+)
RNA-Seq ExpressionLag0024097
SyntenyLag0024097
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCATCATCAAAGTTTGAAAAATTGGACAAGGATTCCGATGCCTTTGAGGAATCTTCTGTTTGTAGTGATAGTGATGGTGAGATGACTGATGAAGAGTTTCGACAATATAATGAAGCAATTGCAAAGAGCCAGGTTTTTATTTGAAAATTGATCTATTTTTCTTTCTTGGTATGCAATTTTAACATTAAACAATGAATATGATGCAGGGTTTTGATGTTCCATACTTTCGTAATTTTGATTTACTCGGTGGAATTCAGCCTATAACGTATATAAAACCATGGAAGGAAGCAATCGATCGAGCTGGAGAGTTAGCCATGAAACAGTACAATGAGCAAAATGTATGTAGTGTTAGTGTATATCTTTGTTGCTTCTCAAGTTGTATTTGATTGTTGTTTGTGAATTGATAAAACGTTATTGTTGTTTGGGTGTAGGGTACAAACTTGGAGATTACAGAATACGTAAAGGTGAATTTGGCGGGAGCGGCTGGTATGCATTATTATATTACTTTCAATGCAAAGCTGAGTGGAACTCCTTCCAACCATCCAACCACGACATTTCAAGCTCTTGTGTTCGATGGTATAAAATCTGTTGAAGTAGAATTTTGTAGGCTAGCGCCTTCTAACAACTAA

mRNA sequence

ATGGCTTCATCATCAAAGTTTGAAAAATTGGACAAGGATTCCGATGCCTTTGAGGAATCTTCTGTTTGTAGTGATAGTGATGGTGAGATGACTGATGAAGAGTTTCGACAATATAATGAAGCAATTGCAAAGAGCCAGGGTTTTGATGTTCCATACTTTCGTAATTTTGATTTACTCGGTGGAATTCAGCCTATAACGTATATAAAACCATGGAAGGAAGCAATCGATCGAGCTGGAGAGTTAGCCATGAAACAGTACAATGAGCAAAATGGTACAAACTTGGAGATTACAGAATACGTAAAGGTGAATTTGGCGGGAGCGGCTGGTATGCATTATTATATTACTTTCAATGCAAAGCTGAGTGGAACTCCTTCCAACCATCCAACCACGACATTTCAAGCTCTTGTGTTCGATGGTATAAAATCTGTTGAAGTAGAATTTTGTAGGCTAGCGCCTTCTAACAACTAA

Coding sequence (CDS)

ATGGCTTCATCATCAAAGTTTGAAAAATTGGACAAGGATTCCGATGCCTTTGAGGAATCTTCTGTTTGTAGTGATAGTGATGGTGAGATGACTGATGAAGAGTTTCGACAATATAATGAAGCAATTGCAAAGAGCCAGGGTTTTGATGTTCCATACTTTCGTAATTTTGATTTACTCGGTGGAATTCAGCCTATAACGTATATAAAACCATGGAAGGAAGCAATCGATCGAGCTGGAGAGTTAGCCATGAAACAGTACAATGAGCAAAATGGTACAAACTTGGAGATTACAGAATACGTAAAGGTGAATTTGGCGGGAGCGGCTGGTATGCATTATTATATTACTTTCAATGCAAAGCTGAGTGGAACTCCTTCCAACCATCCAACCACGACATTTCAAGCTCTTGTGTTCGATGGTATAAAATCTGTTGAAGTAGAATTTTGTAGGCTAGCGCCTTCTAACAACTAA

Protein sequence

MASSSKFEKLDKDSDAFEESSVCSDSDGEMTDEEFRQYNEAIAKSQGFDVPYFRNFDLLGGIQPITYIKPWKEAIDRAGELAMKQYNEQNGTNLEITEYVKVNLAGAAGMHYYITFNAKLSGTPSNHPTTTFQALVFDGIKSVEVEFCRLAPSNN
Homology
BLAST of Lag0024097 vs. NCBI nr
Match: XP_028053036.1 (uncharacterized protein LOC114257478 [Camellia sinensis])

HSP 1 Score: 102.4 bits (254), Expect = 3.5e-18
Identity = 55/126 (43.65%), Postives = 72/126 (57.14%), Query Frame = 0

Query: 29  EMTDEEFRQYNEAIAKSQGFDVPYFRNFDLLGGIQPITYIKPWKEAIDRAGELAMKQYNE 88
           EMTD+E+++Y+  I +S+GFDV  F      G I PI  +      +    ELA+K+YNE
Sbjct: 108 EMTDKEYKEYSRQIKESKGFDVMDFPKSFACGKIMPIINLNYHANHLKSLSELALKEYNE 167

Query: 89  QNGTNLEITEYVKVNLAGAAGMHYYITFNAKLSGTPSNHPTTTFQALVFDGIKSVEVEFC 148
           +  T LE  + VK NL    G  YYITF+ K      + P  TFQALV+DGI  +EV  C
Sbjct: 168 KEKTKLEFVKLVKANLEPCEGFQYYITFDVK-DADAVDGPILTFQALVWDGIDEIEVVLC 227

Query: 149 RLAPSN 155
           RL  SN
Sbjct: 228 RLEISN 232

BLAST of Lag0024097 vs. NCBI nr
Match: THG21948.1 (hypothetical protein TEA_004640 [Camellia sinensis var. sinensis])

HSP 1 Score: 102.4 bits (254), Expect = 3.5e-18
Identity = 55/126 (43.65%), Postives = 72/126 (57.14%), Query Frame = 0

Query: 29  EMTDEEFRQYNEAIAKSQGFDVPYFRNFDLLGGIQPITYIKPWKEAIDRAGELAMKQYNE 88
           EMTD+E+++Y+  I +S+GFDV  F      G I PI  +      +    ELA+K+YNE
Sbjct: 70  EMTDKEYKEYSRQIKESKGFDVMDFPKSFACGKIMPIINLNYHANHLKSLSELALKEYNE 129

Query: 89  QNGTNLEITEYVKVNLAGAAGMHYYITFNAKLSGTPSNHPTTTFQALVFDGIKSVEVEFC 148
           +  T LE  + VK NL    G  YYITF+ K      + P  TFQALV+DGI  +EV  C
Sbjct: 130 KEKTKLEFVKLVKANLEPCEGFQYYITFDVK-DADAVDGPILTFQALVWDGIDEIEVVLC 189

Query: 149 RLAPSN 155
           RL  SN
Sbjct: 190 RLEISN 194

BLAST of Lag0024097 vs. NCBI nr
Match: XP_028091213.1 (uncharacterized protein LOC114291567 [Camellia sinensis])

HSP 1 Score: 102.4 bits (254), Expect = 3.5e-18
Identity = 55/126 (43.65%), Postives = 72/126 (57.14%), Query Frame = 0

Query: 29  EMTDEEFRQYNEAIAKSQGFDVPYFRNFDLLGGIQPITYIKPWKEAIDRAGELAMKQYNE 88
           EMTD+E+++Y+  I +S+GFDV  F      G I PI  +      +    ELA+K+YNE
Sbjct: 3   EMTDKEYKEYSRQIKESKGFDVMDFPKSFACGKIMPIINLNYHANHLKSLSELALKEYNE 62

Query: 89  QNGTNLEITEYVKVNLAGAAGMHYYITFNAKLSGTPSNHPTTTFQALVFDGIKSVEVEFC 148
           +  T LE  + VK NL    G  YYITF+ K      + P  TFQALV+DGI  +EV  C
Sbjct: 63  KEKTKLEFVKLVKANLEPCEGFQYYITFDVK-DADAVDGPILTFQALVWDGIDEIEVVLC 122

Query: 149 RLAPSN 155
           RL  SN
Sbjct: 123 RLEISN 127

BLAST of Lag0024097 vs. NCBI nr
Match: XP_022975633.1 (uncharacterized protein LOC111475320 [Cucurbita maxima])

HSP 1 Score: 99.4 bits (246), Expect = 2.9e-17
Identity = 68/165 (41.21%), Postives = 89/165 (53.94%), Query Frame = 0

Query: 1   MASSSKF-----EKLDKDSDAFEESSVCSDSDGEMTDEEFRQYNEAIAKSQGFDVPYFRN 60
           MASSS       E++D D + F+      D    +T +E  +Y  A+ +SQGFDVPYF  
Sbjct: 1   MASSSHILEEEKEEIDSDDEFFQ------DGYHTITKKEEMEYFCAVNESQGFDVPYFGA 60

Query: 61  FDLLGGIQPIT---YIKPWKEAIDRAGELAMKQYNEQNGTNLEITEYVKVNLAGAAGMHY 120
               G I P+    + + +KE    A E A+K YN +NGTN E+ + VK N  G  G  Y
Sbjct: 61  VYAFGLITPMKLHGFPELFKEVQISANE-AIKHYNSENGTNFEVVDIVKANHEGCCGSMY 120

Query: 121 YITFNAKLSGTPSNHPTTTFQALVFDGI---KSVEVEFCRLAPSN 155
           YITFN K  GT +  P+ TFQA V+  I     +EVE CR  PSN
Sbjct: 121 YITFNVKPIGTSAEFPSITFQAKVYYAIPIKDIIEVELCRPKPSN 158

BLAST of Lag0024097 vs. NCBI nr
Match: THG04121.1 (hypothetical protein TEA_024172 [Camellia sinensis var. sinensis])

HSP 1 Score: 99.4 bits (246), Expect = 2.9e-17
Identity = 53/122 (43.44%), Postives = 70/122 (57.38%), Query Frame = 0

Query: 29  EMTDEEFRQYNEAIAKSQGFDVPYFRNFDLLGGIQPITYIKPWKEAIDRAGELAMKQYNE 88
           EMTD+E+++Y+  I +S+GFDV  F      G I PI  +      +    ELA+K+YNE
Sbjct: 100 EMTDKEYKEYSRQIKESKGFDVMDFPKSFACGKIMPIINLNYHANHLKSLSELALKEYNE 159

Query: 89  QNGTNLEITEYVKVNLAGAAGMHYYITFNAKLSGTPSNHPTTTFQALVFDGIKSVEVEFC 148
           +  T LE  + VK NL    G  YYITF+ K      + P  TFQALV+DGI  +EV  C
Sbjct: 160 KEKTKLEFVKLVKANLEPCEGFQYYITFDVK-DADAVDGPILTFQALVWDGIDEIEVVLC 219

Query: 149 RL 151
           RL
Sbjct: 220 RL 220

BLAST of Lag0024097 vs. ExPASy Swiss-Prot
Match: Q9SV54 (UPF0725 protein At4g28920 OS=Arabidopsis thaliana OX=3702 GN=At4g28920 PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 4.1e-06
Identity = 45/127 (35.43%), Postives = 64/127 (50.39%), Query Frame = 0

Query: 24  SDSDGEMTDEEFRQYNEAIAKSQGFDVPYFRNFDLLGGIQ--PITYIKPWKEAIDRAGEL 83
           S+SD EM  EE + Y   + +S GFDV YFR      GI+  P+     +   I+  G L
Sbjct: 7   SESDIEMDPEEEKVYRRQVEESDGFDVDYFR----YAGIKPCPLKDENAYTYDIELFGRL 66

Query: 84  AMKQYN-EQNGTNLE---ITEYVKVNLAGAAGMHYYITFNAKLSGTPSNHPTTTFQALVF 143
            +  YN    GTNL+   I +Y   N+  ++G +YYIT  A    T +N P  TFQ  V 
Sbjct: 67  GLHCYNLLHEGTNLKLMCIPKYNTNNIGVSSGDYYYITLEA--IDTYNNSP-CTFQTYVS 126

Query: 144 DGIKSVE 145
           +  ++ E
Sbjct: 127 EWYQTSE 126

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_028053036.13.5e-1843.65uncharacterized protein LOC114257478 [Camellia sinensis][more]
THG21948.13.5e-1843.65hypothetical protein TEA_004640 [Camellia sinensis var. sinensis][more]
XP_028091213.13.5e-1843.65uncharacterized protein LOC114291567 [Camellia sinensis][more]
XP_022975633.12.9e-1741.21uncharacterized protein LOC111475320 [Cucurbita maxima][more]
THG04121.12.9e-1743.44hypothetical protein TEA_024172 [Camellia sinensis var. sinensis][more]
Match NameE-valueIdentityDescription
Q9SV544.1e-0635.43UPF0725 protein At4g28920 OS=Arabidopsis thaliana OX=3702 GN=At4g28920 PE=3 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006525Cystatin-related, plantTIGRFAMTIGR01638TIGR01638coord: 72..153
e-value: 2.2E-10
score: 38.5
IPR000010Cystatin domainPFAMPF00031Cystatincoord: 72..121
e-value: 6.1E-5
score: 23.2
NoneNo IPR availableGENE3D3.10.450.10coord: 23..146
e-value: 5.8E-10
score: 41.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..19
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..30
NoneNo IPR availablePANTHERPTHR31260:SF28CYSTATIN/MONELLIN SUPERFAMILY PROTEINcoord: 7..152
NoneNo IPR availablePANTHERPTHR31260CYSTATIN/MONELLIN SUPERFAMILY PROTEINcoord: 7..152
NoneNo IPR availableSUPERFAMILY54403Cystatin/monellincoord: 59..121

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0024097.1Lag0024097.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0004869 cysteine-type endopeptidase inhibitor activity