Lag0023438 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0023438
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionCyclin-dependent protein kinase inhibitor SMR2
Locationchr7: 48220508 .. 48220831 (-)
RNA-Seq ExpressionLag0023438
SyntenyLag0023438
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTGAATTTCACAAATCCGATCTCCAAAAGTCAGTACAAACTCAAAAGCCACTGGAAGAAGCTGATCGGAGCGACGACGAAGACGGTCGAGAAGCCCTTCAGGTGGCACCCGATGGTGGCGGAGAGAGCTGCCGAACTCCGACATCTCTCCGACATCGAATTCCGACCGTGCGAAGCTGCCCGACGACGCCAAGAAAGCGGAAAGTTGTGAGCAAGAGGAAAATTTCAGATCAAAGCTTCTTTGAGGCCACGGGAAGGGGAGAGAAAATTTTTCTATCACTGATAGAATCTATCAGTGATAGAAACACTTTCTATCAATGA

mRNA sequence

ATGTCTGAATTTCACAAATCCGATCTCCAAAAGTCAGTACAAACTCAAAAGCCACTGGAAGAAGCTGATCGGAGCGACGACGAAGACGGTCGAGAAGCCCTTCAGGTGGCACCCGATGGTGGCGGAGAGAGCTGCCGAACTCCGACATCTCTCCGACATCGAATTCCGACCGTGCGAAGCTGCCCGACGACGCCAAGAAAGCGGAAAGTTGTGAGCAAGAGGAAAATTTCAGATCAAAGCTTCTTTGAGGCCACGGGAAGGGGAGAGAAAATTTTTCTATCACTGATAGAATCTATCAGTGATAGAAACACTTTCTATCAATGA

Coding sequence (CDS)

ATGTCTGAATTTCACAAATCCGATCTCCAAAAGTCAGTACAAACTCAAAAGCCACTGGAAGAAGCTGATCGGAGCGACGACGAAGACGGTCGAGAAGCCCTTCAGGTGGCACCCGATGGTGGCGGAGAGAGCTGCCGAACTCCGACATCTCTCCGACATCGAATTCCGACCGTGCGAAGCTGCCCGACGACGCCAAGAAAGCGGAAAGTTGTGAGCAAGAGGAAAATTTCAGATCAAAGCTTCTTTGAGGCCACGGGAAGGGGAGAGAAAATTTTTCTATCACTGATAGAATCTATCAGTGATAGAAACACTTTCTATCAATGA

Protein sequence

MSEFHKSDLQKSVQTQKPLEEADRSDDEDGREALQVAPDGGGESCRTPTSLRHRIPTVRSCPTTPRKRKVVSKRKISDQSFFEATGRGEKIFLSLIESISDRNTFYQ
Homology
BLAST of Lag0023438 vs. NCBI nr
Match: KAG6586014.1 (hypothetical protein SDJN03_18747, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037379.1 hypothetical protein SDJN02_01004, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 127.9 bits (320), Expect = 5.3e-26
Identity = 65/89 (73.03%), Postives = 72/89 (80.90%), Query Frame = 0

Query: 1  MSEFHKSDLQKSVQTQKPLEEADRSDDEDGREALQVAPDGGGESCRTPTSLRHRIPTVRS 60
          MSEF  SD QKS++ QKP EE DRS +EDG EAL    DGGGESCRTP+SL+HRIP  RS
Sbjct: 1  MSEFQNSDHQKSLEPQKPAEEVDRSKEEDGGEALLAVEDGGGESCRTPSSLKHRIPAARS 60

Query: 61 CPTTPRKRKVVSKRKISDQSFFEATGRGE 90
          CPTTPRK+KVVSKRK SDQSFFE+T R E
Sbjct: 61 CPTTPRKKKVVSKRKFSDQSFFESTRREE 89

BLAST of Lag0023438 vs. NCBI nr
Match: KAA0052125.1 (cyclin-dependent protein kinase inhibitor SMR2 [Cucumis melo var. makuwa] >TYJ98071.1 cyclin-dependent protein kinase inhibitor SMR2 [Cucumis melo var. makuwa])

HSP 1 Score: 119.0 bits (297), Expect = 2.5e-23
Identity = 61/89 (68.54%), Postives = 70/89 (78.65%), Query Frame = 0

Query: 1  MSEFHKSDLQKSVQTQKPLEEADRSDDEDGREALQVAPDGGGESCRTPTSLRHRIPTVRS 60
          MS+ HKSD +K ++T K LE  DRS +E   EAL+ A D  GESCRTPTSLRHRIP  +S
Sbjct: 1  MSQIHKSDQEKVLETPKALEYGDRSTEEGSGEALKAAEDDEGESCRTPTSLRHRIPIAQS 60

Query: 61 CPTTPRKRKVVSKRKISDQSFFEATGRGE 90
          CPTTPRK++V  KRKISDQSFFEATGRGE
Sbjct: 61 CPTTPRKQRVARKRKISDQSFFEATGRGE 89

BLAST of Lag0023438 vs. NCBI nr
Match: KAG6583595.1 (hypothetical protein SDJN03_19527, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 117.1 bits (292), Expect = 9.4e-23
Identity = 65/89 (73.03%), Postives = 68/89 (76.40%), Query Frame = 0

Query: 1  MSEFHKSDLQKSVQTQKPLEEADRSDDEDGREALQVAPDGGGESCRTPTSLRHRIPTVRS 60
          MS+FHKSD QK  +  KP EE DRS +EDG      A D GGESCRTPTSLRHRIPT RS
Sbjct: 1  MSQFHKSDHQKVKEPPKPPEEGDRSKEEDGGGE---AVDCGGESCRTPTSLRHRIPTARS 60

Query: 61 CPTTPRKRKVVSKRKISDQSFFEATGRGE 90
           PTTPRKRKV SKRK SDQSFFE TGRGE
Sbjct: 61 YPTTPRKRKVASKRKFSDQSFFEVTGRGE 86

BLAST of Lag0023438 vs. NCBI nr
Match: KAG7019295.1 (hypothetical protein SDJN02_18255, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 114.4 bits (285), Expect = 6.1e-22
Identity = 63/89 (70.79%), Postives = 67/89 (75.28%), Query Frame = 0

Query: 1  MSEFHKSDLQKSVQTQKPLEEADRSDDEDGREALQVAPDGGGESCRTPTSLRHRIPTVRS 60
          MS+FHKSD QK  +  KP EE DRS +EDG      A D  GESCRTPTSLRHRIPT RS
Sbjct: 1  MSQFHKSDHQKVKEPPKPPEEGDRSKEEDGGGE---AVDCSGESCRTPTSLRHRIPTARS 60

Query: 61 CPTTPRKRKVVSKRKISDQSFFEATGRGE 90
           PTTPRKRK+ SKRK SDQSFFE TGRGE
Sbjct: 61 YPTTPRKRKIASKRKFSDQSFFEVTGRGE 86

BLAST of Lag0023438 vs. NCBI nr
Match: KAE8652786.1 (hypothetical protein Csa_022878 [Cucumis sativus])

HSP 1 Score: 109.8 bits (273), Expect = 1.5e-20
Identity = 57/89 (64.04%), Postives = 67/89 (75.28%), Query Frame = 0

Query: 1  MSEFHKSDLQKSVQTQKPLEEADRSDDEDGREALQVAPDGGGESCRTPTSLRHRIPTVRS 60
          MS+FHKSD QK ++  +  E  DRS +E   EAL+ A    GESCRTPTS +HRIP  +S
Sbjct: 1  MSQFHKSDQQKVLEAPEAPEHGDRSTEEGRGEALKAAEHDDGESCRTPTSPQHRIPIAQS 60

Query: 61 CPTTPRKRKVVSKRKISDQSFFEATGRGE 90
          CPTTPRK++VV KRK SDQSFFEATGRGE
Sbjct: 61 CPTTPRKQRVVRKRKFSDQSFFEATGRGE 89

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6586014.15.3e-2673.03hypothetical protein SDJN03_18747, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0052125.12.5e-2368.54cyclin-dependent protein kinase inhibitor SMR2 [Cucumis melo var. makuwa] >TYJ98... [more]
KAG6583595.19.4e-2373.03hypothetical protein SDJN03_19527, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7019295.16.1e-2270.79hypothetical protein SDJN02_18255, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAE8652786.11.5e-2064.04hypothetical protein Csa_022878 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..72
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 17..34
NoneNo IPR availablePANTHERPTHR33142:SF13CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR2-LIKEcoord: 10..89
IPR040389Cyclin-dependent protein kinase inhibitor SMRPANTHERPTHR33142CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR13coord: 10..89

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0023438.1Lag0023438.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032875 regulation of DNA endoreduplication