Lag0023377 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0023377
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	SAGA-associated factor 11
Location	chr7: 47741720 .. 47743322 (-)
RNA-Seq Expression	Lag0023377
Synteny	Lag0023377

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAATGCCTAATGAGGACAATTCATCTTCTCCTACTCAGGTAGTCTTTCCCTTTATATAGGTGTTCTCCTTTTTCTCATTTGCATTTAGCACCTTAGTATATGAACAATGAGGAATGGAGGTAACAGCTATAATGGCTTTGTTTATGGTGTAGAACCAAATCTTGAATTAATTGTTGATATTGGAATATGCAAGTTACAAGAGAACAATGCTATTATACCACCTCTTATAAACGGTTTACAAGCCTAACAGTCAACAAGCTATTAATTAGTCCTAACCTAATCAGCCCACAAAGAACCTAGTAAGCTCTCTTTCAAGATTTCCCCTACCTAAGTTCAATGATACTCGACCAAATTGTTTGCTTGAAATGAGGGAAAGCACCGGATCTCCATTTTCTTGTCTGTGAGATTATATCTGCACCAGAGAGTATCTACATAAATGGGGAGACATTTTAAGTTTGGTGTCTATGTGAGAATGGATTGGAATTGCTTCAAAAAATAAATTAAAAAGATTAGGATTTCTAATATGTTACTCTTTGCAGTAGTTTGTCTTTATTGTCTTTGGTATGTTCCAGAAATAGAATTGTAAAAAATATGAAAACGTGTATATTTCTCTCTGGATTGCTAGGAAGAGTGATGTACATCTGGCTGGTTCTTTTATATTATTCTTCTAATTATTATATTAGACATAAAGACTTTGAGCCTAGTGTGTTAACACAGAGATGTTGGGCATTAATTCTTGTGGCAAGCCTCAAAAGCCTTTTAAAACATTTCAGCACCTAAACCAACATGTCAAACTCAATGAATTATTTGAAAGCTCTGCCTTAACTTTTATTTTAAGGTGTGAGAAAATGATTAGTCTAAGCATGGGTGATGTGTCAAACATGCCATGAAAACTCAAGAAGTATGGTAGTATTAGTGATCACTTTTGACATCCTTATTTGAGGACACAGAACTGATTGAACTGGTACTTCTGTTGCTGTCTGCTTATATTTGCAGCTTTCATCTAATTTCTTTGGGGATCTCCTGGATTCCGTTATTGTTGATGTTGCATCGGAATGTCATCGAATAGCAAGATTAGGCCTTGATCGTAACTTAGAAGAGGAAGAAGAAGAATTAAGACTTTCAGCACAGGCACGAGTAAGAGTAGCTGACTCTAGCAATAGTAGTGAAGCAAACGGAAAATATGTAGTTGATATTTTTGGACAAAATCATCCCCCGGTTGCAAATGAAATATTTGATTGCATGAATTGTGGTCGATCAATCATGGCTGGAAGATTTGCTCCTCATTTAGAGAAATGCATGGGAAGGGTAACTCTCTGCCCCTCAATGGCTATATGTTTTGCCGACTCATTATGCTTCCATTTTGTTTAATCTCTCTTCCCTCCATCTCATCGACTGTCTACTTTACTGATATAGGGTAGAAAGGCTCGCCTCAAAGTAACAAGAAGCAGTACAGCTGCACAGAGCCGGTATTCACGAGGCAGTCCTGTTTCTGCATATTCCCCTTATCCTAATTCCACCAGCACAAATCGCTTGCCTAATGGAACGTCTAGCCTTGCAGGGGAGGAGTACTCAAACGGTACATCCGAAGACCCATGA

mRNA sequence

ATGTCAATGCCTAATGAGGACAATTCATCTTCTCCTACTCAGCTTTCATCTAATTTCTTTGGGGATCTCCTGGATTCCGTTATTGTTGATGTTGCATCGGAATGTCATCGAATAGCAAGATTAGGCCTTGATCGTAACTTAGAAGAGGAAGAAGAAGAATTAAGACTTTCAGCACAGGCACGAGTAAGAGTAGCTGACTCTAGCAATAGTAGTGAAGCAAACGGAAAATATGTAGTTGATATTTTTGGACAAAATCATCCCCCGGTTGCAAATGAAATATTTGATTGCATGAATTGTGGTCGATCAATCATGGCTGGAAGATTTGCTCCTCATTTAGAGAAATGCATGGGAAGGGGTAGAAAGGCTCGCCTCAAAGTAACAAGAAGCAGTACAGCTGCACAGAGCCGGTATTCACGAGGCAGTCCTGTTTCTGCATATTCCCCTTATCCTAATTCCACCAGCACAAATCGCTTGCCTAATGGAACGTCTAGCCTTGCAGGGGAGGAGTACTCAAACGGTACATCCGAAGACCCATGA

Coding sequence (CDS)

ATGTCAATGCCTAATGAGGACAATTCATCTTCTCCTACTCAGCTTTCATCTAATTTCTTTGGGGATCTCCTGGATTCCGTTATTGTTGATGTTGCATCGGAATGTCATCGAATAGCAAGATTAGGCCTTGATCGTAACTTAGAAGAGGAAGAAGAAGAATTAAGACTTTCAGCACAGGCACGAGTAAGAGTAGCTGACTCTAGCAATAGTAGTGAAGCAAACGGAAAATATGTAGTTGATATTTTTGGACAAAATCATCCCCCGGTTGCAAATGAAATATTTGATTGCATGAATTGTGGTCGATCAATCATGGCTGGAAGATTTGCTCCTCATTTAGAGAAATGCATGGGAAGGGGTAGAAAGGCTCGCCTCAAAGTAACAAGAAGCAGTACAGCTGCACAGAGCCGGTATTCACGAGGCAGTCCTGTTTCTGCATATTCCCCTTATCCTAATTCCACCAGCACAAATCGCTTGCCTAATGGAACGTCTAGCCTTGCAGGGGAGGAGTACTCAAACGGTACATCCGAAGACCCATGA

Protein sequence

MSMPNEDNSSSPTQLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARVRVADSSNSSEANGKYVVDIFGQNHPPVANEIFDCMNCGRSIMAGRFAPHLEKCMGRGRKARLKVTRSSTAAQSRYSRGSPVSAYSPYPNSTSTNRLPNGTSSLAGEEYSNGTSEDP

Homology

[Close]

BLAST of Lag0023377 vs. NCBI nr
Match: XP_008457340.1 (PREDICTED: ataxin-7-like protein 3 [Cucumis melo] >XP_008457341.1 PREDICTED: ataxin-7-like protein 3 [Cucumis melo])

HSP 1 Score: 330.9 bits (847), Expect = 6.9e-87
Identity = 171/178 (96.07%), Postives = 173/178 (97.19%), Query Frame = 0


Query: 1   MSMPNEDNSSSPTQLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQA 60
           MSMPNEDN+SS TQLSSN FGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQA
Sbjct: 1   MSMPNEDNASSQTQLSSNLFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQA 60

Query: 61  RVRVADSSNSSEANGKYVVDIFGQNHPPVANEIFDCMNCGRSIMAGRFAPHLEKCMGRGR 120
           RVRVADSSNSSEANGKYVVDIFGQ HP VANEIFDCMNCGRSIMAGRFAPHLEKCMGRGR
Sbjct: 61  RVRVADSSNSSEANGKYVVDIFGQTHPSVANEIFDCMNCGRSIMAGRFAPHLEKCMGRGR 120

Query: 121 KARLKVTRSSTAAQSRYSRGSPVSAYSPYPNSTSTNRLPNGTSSLAGEEYSNGTSEDP 179
           KAR KVTRSSTAAQSRYSRG+PVSAYSPYPNSTSTNRLPNGTSSLAGEEYSNGTSEDP
Sbjct: 121 KARPKVTRSSTAAQSRYSRGNPVSAYSPYPNSTSTNRLPNGTSSLAGEEYSNGTSEDP 178

[Close]

BLAST of Lag0023377 vs. NCBI nr
Match: XP_004153719.1 (SAGA-associated factor 11 [Cucumis sativus] >XP_011658722.1 SAGA-associated factor 11 [Cucumis sativus] >KGN65832.1 hypothetical protein Csa_023220 [Cucumis sativus])

HSP 1 Score: 330.5 bits (846), Expect = 9.0e-87
Identity = 170/178 (95.51%), Postives = 173/178 (97.19%), Query Frame = 0


Query: 1   MSMPNEDNSSSPTQLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQA 60
           MSMPNEDN+SS TQLSSN FGDLLDSVIVD+ASECHRIARLGLDRNLEEEEEELRLSAQA
Sbjct: 1   MSMPNEDNASSQTQLSSNLFGDLLDSVIVDIASECHRIARLGLDRNLEEEEEELRLSAQA 60

Query: 61  RVRVADSSNSSEANGKYVVDIFGQNHPPVANEIFDCMNCGRSIMAGRFAPHLEKCMGRGR 120
           RVRVADSSNSSEANGKYVVDIFGQ HP VANEIFDCMNCGRSIMAGRFAPHLEKCMGRGR
Sbjct: 61  RVRVADSSNSSEANGKYVVDIFGQTHPSVANEIFDCMNCGRSIMAGRFAPHLEKCMGRGR 120

Query: 121 KARLKVTRSSTAAQSRYSRGSPVSAYSPYPNSTSTNRLPNGTSSLAGEEYSNGTSEDP 179
           KAR KVTRSSTAAQSRYSRG+PVSAYSPYPNSTSTNRLPNGTSSLAGEEYSNGTSEDP
Sbjct: 121 KARPKVTRSSTAAQSRYSRGNPVSAYSPYPNSTSTNRLPNGTSSLAGEEYSNGTSEDP 178

[Close]

BLAST of Lag0023377 vs. NCBI nr
Match: XP_038893583.1 (SAGA-associated factor 11 [Benincasa hispida] >XP_038893584.1 SAGA-associated factor 11 [Benincasa hispida] >XP_038893585.1 SAGA-associated factor 11 [Benincasa hispida])

HSP 1 Score: 321.2 bits (822), Expect = 5.5e-84
Identity = 167/178 (93.82%), Postives = 170/178 (95.51%), Query Frame = 0


Query: 1   MSMPNEDNSSSPTQLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQA 60
           MSMPNEDN+SS TQLSSN FGDLLDSVIVD+ASECHRIARLGLDRNLEEEEEELRLSAQA
Sbjct: 1   MSMPNEDNASSQTQLSSNLFGDLLDSVIVDIASECHRIARLGLDRNLEEEEEELRLSAQA 60

Query: 61  RVRVADSSNSSEANGKYVVDIFGQNHPPVANEIFDCMNCGRSIMAGRFAPHLEKCMGRGR 120
           RVRVADSSNSSEANGKYVVDIFGQ HP VANEIFDCMNCGRSIMAGRFAPHLEKCMGRGR
Sbjct: 61  RVRVADSSNSSEANGKYVVDIFGQTHPSVANEIFDCMNCGRSIMAGRFAPHLEKCMGRGR 120

Query: 121 KARLKVTRSSTAAQSRYSRGSPVSAYSPYPNSTSTNRLPNGTSSLAGEEYSNGTSEDP 179
           KAR KVTRSSTAAQSRYSRG+PVSAYSPY NSTSTNRL NGTSSLAGEEYSNG SEDP
Sbjct: 121 KARPKVTRSSTAAQSRYSRGNPVSAYSPYSNSTSTNRLLNGTSSLAGEEYSNGISEDP 178

[Close]

BLAST of Lag0023377 vs. NCBI nr
Match: KAA0060025.1 (farnesol kinase [Cucumis melo var. makuwa] >TYJ97282.1 farnesol kinase [Cucumis melo var. makuwa])

HSP 1 Score: 319.3 bits (817), Expect = 2.1e-83
Identity = 165/172 (95.93%), Postives = 167/172 (97.09%), Query Frame = 0


Query: 1   MSMPNEDNSSSPTQLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQA 60
           MSMPNEDN+SS TQLSSN FGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQA
Sbjct: 247 MSMPNEDNASSQTQLSSNLFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQA 306

Query: 61  RVRVADSSNSSEANGKYVVDIFGQNHPPVANEIFDCMNCGRSIMAGRFAPHLEKCMGRGR 120
           RVRVADSSNSSEANGKYVVDIFGQ HP VANEIFDCMNCGRSIMAGRFAPHLEKCMGRGR
Sbjct: 307 RVRVADSSNSSEANGKYVVDIFGQTHPSVANEIFDCMNCGRSIMAGRFAPHLEKCMGRGR 366

Query: 121 KARLKVTRSSTAAQSRYSRGSPVSAYSPYPNSTSTNRLPNGTSSLAGEEYSN 173
           KAR KVTRSSTAAQSRYSRG+PVSAYSPYPNSTSTNRLPNGTSSLAGEEYSN
Sbjct: 367 KARPKVTRSSTAAQSRYSRGNPVSAYSPYPNSTSTNRLPNGTSSLAGEEYSN 418

[Close]

BLAST of Lag0023377 vs. NCBI nr
Match: XP_022150963.1 (ataxin-7-like protein 3 [Momordica charantia] >XP_022150964.1 ataxin-7-like protein 3 [Momordica charantia])

HSP 1 Score: 313.5 bits (802), Expect = 1.1e-81
Identity = 161/178 (90.45%), Postives = 167/178 (93.82%), Query Frame = 0


Query: 1   MSMPNEDNSSSPTQLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQA 60
           MSMPNE+++SS TQLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQA
Sbjct: 1   MSMPNEEHASSHTQLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQA 60

Query: 61  RVRVADSSNSSEANGKYVVDIFGQNHPPVANEIFDCMNCGRSIMAGRFAPHLEKCMGRGR 120
           RVRVADSSNSSEANGKY+VDIFGQ HP VANEIFDCMNCGRSIMAGRFAPHLEKCMGRGR
Sbjct: 61  RVRVADSSNSSEANGKYIVDIFGQTHPSVANEIFDCMNCGRSIMAGRFAPHLEKCMGRGR 120

Query: 121 KARLKVTRSSTAAQSRYSRGSPVSAYSPYPNSTSTNRLPNGTSSLAGEEYSNGTSEDP 179
           KARLKVTRSSTAAQ RYSRGSPV AYSPY +S   NRLPNG S +AGEEYSNGTSEDP
Sbjct: 121 KARLKVTRSSTAAQGRYSRGSPVPAYSPYTSSPGANRLPNGMSGVAGEEYSNGTSEDP 178

[Close]

BLAST of Lag0023377 vs. ExPASy Swiss-Prot
Match: Q94BV2 (SAGA-associated factor 11 OS=Arabidopsis thaliana OX=3702 GN=SGF11 PE=1 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 2.2e-59
Identity = 117/169 (69.23%), Postives = 138/169 (81.66%), Query Frame = 0


Query: 6   EDNSSSPTQLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARVRVA 65
           EDN SS  QLSS  F DL+DSVI DVASECHR+ARLGLDR+L+  EEELRLS +AR ++A
Sbjct: 5   EDNKSSHAQLSSQIFLDLVDSVIADVASECHRVARLGLDRDLDIVEEELRLSVEARAKIA 64

Query: 66  DSSNSSEANGKYVVDIFGQNHPPVANEIFDCMNCGRSIMAGRFAPHLEKCMGRGRKARLK 125
           D SN+ E N KYVVDIFGQ HPPVA+E+F+CMNCGR I+AGRFAPHLEKCMG+GRKAR K
Sbjct: 65  DPSNNLETNTKYVVDIFGQTHPPVASEVFNCMNCGRQIVAGRFAPHLEKCMGKGRKARAK 124

Query: 126 VTRSSTAAQSRYSRGSPVSAYSPYPNSTSTNRLPNGTSSLAGEEYSNGT 175
            TRS+TAAQ+R +R SP   YSPYPNS S N+L +G+  +AGE+ SN T
Sbjct: 125 TTRSTTAAQNRNARRSPNPRYSPYPNSASENQLASGSPGVAGEDCSNFT 173

[Close]

BLAST of Lag0023377 vs. ExPASy Swiss-Prot
Match: A1L209 (Ataxin-7-like protein 3 OS=Danio rerio OX=7955 GN=atxn7l3 PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.1e-07
Identity = 45/139 (32.37%), Postives = 67/139 (48.20%), Query Frame = 0


Query: 1   MSMPNEDNSSSPTQLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQA 60
           MS+   DN+     L+ + + DL++   + +  E HR  + G    L+E ++E       
Sbjct: 6   MSLSGLDNTKLEA-LAHDVYSDLVEDACLGLCFEVHRAVKQGY-FFLDETDQE------- 65

Query: 61  RVRVADSSNSSEANGKYVVDIFGQNHPPVANEIFDCMNCGRSIMAGRFAPHLEKCMGRGR 120
                 S    E   +  VDIFGQ +    N+   C NC RSI A RFAPHLEKC+G GR
Sbjct: 66  ------SMKDFEIVDQPGVDIFGQVYNQWKNKECVCPNCSRSIAASRFAPHLEKCLGMGR 125

Query: 121 K----ARLKVTRSSTAAQS 136
                A  ++  S+  ++S
Sbjct: 126 NSSRIANRRIASSNNTSKS 129

[Close]

BLAST of Lag0023377 vs. ExPASy Swiss-Prot
Match: B1PM81 (SAGA-associated factor 11 homolog OS=Musca domestica OX=7370 GN=Sgf11 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.6e-06
Identity = 44/143 (30.77%), Postives = 64/143 (44.76%), Query Frame = 0


Query: 14  QLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARVRVADSSNSSEA 73
           + ++  +  LLD  +V V  E H + + G   NL   +      ++   R+ D  N    
Sbjct: 59  EAANYLYQSLLDDAVVGVFLEIHHLRKTG---NLTAMDGVNEDESETSFRIVDMPN---- 118

Query: 74  NGKYVVDIFGQNHPPVANEIFDCM--NCGRSIMAGRFAPHLEKCMGRGRKARLKVTRSST 133
                 DIFG +    A +  DC   NC R + A RFAPHLEKCMG GR +    +R   
Sbjct: 119 -----FDIFGIS---TAKKPMDCTCPNCDRPVSAARFAPHLEKCMGMGRISSRIASRRLA 178

Query: 134 AAQSRYSRGSPVSAYSPYPNSTS 155
             +S  +  S  S+Y    N+ S
Sbjct: 179 TKESNSASSSSSSSYLQTTNAGS 186

[Close]

BLAST of Lag0023377 vs. ExPASy Swiss-Prot
Match: B4KY72 (SAGA-associated factor 11 homolog OS=Drosophila mojavensis OX=7230 GN=Sgf11 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.6e-06
Identity = 41/129 (31.78%), Postives = 60/129 (46.51%), Query Frame = 0


Query: 20  FGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARVRVADSSNSSEANGKYVV 79
           F  LLD V+  +  E H + + G    L+   EE   +A++  R+ +  N         +
Sbjct: 54  FQGLLDDVVAGIFIEIHHLRKTGNLTALDGVGEE---NAESAYRICEMPN---------L 113

Query: 80  DIFGQNHPPVANEIFDCM--NCGRSIMAGRFAPHLEKCMGRGRKARLKVTRSSTAAQSRY 139
           DIFG +    A +  DC   +C R + A RFAPHLEKCMG GR +    +R     +   
Sbjct: 114 DIFGIS---TAKKPMDCTCPHCDRLVAAARFAPHLEKCMGMGRISSRIASRRLATKEGAS 167

Query: 140 SRGSPVSAY 147
           +  S  S Y
Sbjct: 174 ASSSSTSTY 167

[Close]

BLAST of Lag0023377 vs. ExPASy Swiss-Prot
Match: Q14CW9 (Ataxin-7-like protein 3 OS=Homo sapiens OX=9606 GN=ATXN7L3 PE=1 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 4.8e-06
Identity = 39/122 (31.97%), Postives = 56/122 (45.90%), Query Frame = 0


Query: 1   MSMPNEDNSSSPTQLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQA 60
           MS+   DNS     ++   + DL++   +    E HR  + G    L++ +         
Sbjct: 6   MSLSGLDNSKLEA-IAQEIYADLVEDSCLGFCFEVHRAVKCGY-FFLDDTD--------- 65

Query: 61  RVRVADSSNSSEANGKYVVDIFGQNHPPVANEIFDCMNCGRSIMAGRFAPHLEKCMGRGR 120
                DS    E   +  +DIFGQ      ++   C NC RSI A RFAPHLEKC+G GR
Sbjct: 66  ----PDSMKDFEIVDQPGLDIFGQVFNQWKSKECVCPNCSRSIAASRFAPHLEKCLGMGR 112

Query: 121 KA 123
            +
Sbjct: 126 NS 112

The following BLAST results are available for this feature:

BLAST of Lag0023377 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008457340.1	6.9e-87	96.07	PREDICTED: ataxin-7-like protein 3 [Cucumis melo] >XP_008457341.1 PREDICTED: ata...	[more]
XP_004153719.1	9.0e-87	95.51	SAGA-associated factor 11 [Cucumis sativus] >XP_011658722.1 SAGA-associated fact...	[more]
XP_038893583.1	5.5e-84	93.82	SAGA-associated factor 11 [Benincasa hispida] >XP_038893584.1 SAGA-associated fa...	[more]
KAA0060025.1	2.1e-83	95.93	farnesol kinase [Cucumis melo var. makuwa] >TYJ97282.1 farnesol kinase [Cucumis ...	[more]
XP_022150963.1	1.1e-81	90.45	ataxin-7-like protein 3 [Momordica charantia] >XP_022150964.1 ataxin-7-like prot...	[more]

BLAST of Lag0023377 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94BV2	2.2e-59	69.23	SAGA-associated factor 11 OS=Arabidopsis thaliana OX=3702 GN=SGF11 PE=1 SV=1	[more]
A1L209	1.1e-07	32.37	Ataxin-7-like protein 3 OS=Danio rerio OX=7955 GN=atxn7l3 PE=2 SV=1	[more]
B1PM81	1.6e-06	30.77	SAGA-associated factor 11 homolog OS=Musca domestica OX=7370 GN=Sgf11 PE=2 SV=1	[more]
B4KY72	3.6e-06	31.78	SAGA-associated factor 11 homolog OS=Drosophila mojavensis OX=7230 GN=Sgf11 PE=3...	[more]
Q14CW9	4.8e-06	31.97	Ataxin-7-like protein 3 OS=Homo sapiens OX=9606 GN=ATXN7L3 PE=1 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.160.60	Classic Zinc Finger	coord: 93..121 e-value: 2.6E-10 score: 41.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 125..178
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 127..172
None	No IPR available	PANTHER	PTHR47674	SAGA-ASSOCIATED FACTOR 11	coord: 1..176
IPR013246	SAGA complex, Sgf11 subunit	PFAM	PF08209	Sgf11	coord: 91..121 e-value: 6.3E-17 score: 60.8

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0023377.1	Lag0023377.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006325	chromatin organization
biological_process	GO:0035616	histone H2B conserved C-terminal lysine deubiquitination
biological_process	GO:0016310	phosphorylation
cellular_component	GO:0031969	chloroplast membrane
cellular_component	GO:0071819	DUBm complex
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0070461	SAGA-type complex
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0046872	metal ion binding