Lag0023285 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0023285
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	maternal effect embryo arrest 60
Location	chr7: 46835945 .. 46836484 (-)
RNA-Seq Expression	Lag0023285
Synteny	Lag0023285

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCGGCACCCCACGGCGGCGCTCCACCTCCACCAGAATCCACGTCATGGCCCTCGACGGCATCGTCAACGTCAACTCCCTCTTCACCTTCGCCGTCTTCCTCGGCGTCGCCTGGTACCCCACCGCCGACCCCGCTGCCAACCTTCTCGACGACGGAGACGACGGCCCCTGCGCCTCCACCGCCGCCGTCGCCGAGAACCTCATCGCCTGCCACGTGTACTCCTTCAGCTGCTTCCTCTTCTCCAGCCTGGTCGCCTCGGCGCTGAAGCAGGCGATTAGGATCATCAGCGGCGGCGATGGAGGGCAGGGTGTGGCCCACGCGCCGGCTCTGCGAGTGGGGATGGTGGCGTCGGCAGTCGGGTCGGTTCTCGGGTGCGGGTTTTTGGTGGCGGCGCTGCTGAATTTGGTTCAGATAAAATTGGGGACTTTCGGTTGCCGGCGGTGGGAGACGGTGGCGGCCGCCGTGCCGTTGGTGAGTTTGGTTCCGTTGGCGCTTTTCATTTACATCGCTCTTGTTCTTCACGCCTTCACGCGCTAG

mRNA sequence

ATGTCCGGCACCCCACGGCGGCGCTCCACCTCCACCAGAATCCACGTCATGGCCCTCGACGGCATCGTCAACGTCAACTCCCTCTTCACCTTCGCCGTCTTCCTCGGCGTCGCCTGGTACCCCACCGCCGACCCCGCTGCCAACCTTCTCGACGACGGAGACGACGGCCCCTGCGCCTCCACCGCCGCCGTCGCCGAGAACCTCATCGCCTGCCACGTGTACTCCTTCAGCTGCTTCCTCTTCTCCAGCCTGGTCGCCTCGGCGCTGAAGCAGGCGATTAGGATCATCAGCGGCGGCGATGGAGGGCAGGGTGTGGCCCACGCGCCGGCTCTGCGAGTGGGGATGGTGGCGTCGGCAGTCGGGTCGGTTCTCGGGTGCGGGTTTTTGGTGGCGGCGCTGCTGAATTTGGTTCAGATAAAATTGGGGACTTTCGGTTGCCGGCGGTGGGAGACGGTGGCGGCCGCCGTGCCGTTGGTGAGTTTGGTTCCGTTGGCGCTTTTCATTTACATCGCTCTTGTTCTTCACGCCTTCACGCGCTAG

Coding sequence (CDS)

ATGTCCGGCACCCCACGGCGGCGCTCCACCTCCACCAGAATCCACGTCATGGCCCTCGACGGCATCGTCAACGTCAACTCCCTCTTCACCTTCGCCGTCTTCCTCGGCGTCGCCTGGTACCCCACCGCCGACCCCGCTGCCAACCTTCTCGACGACGGAGACGACGGCCCCTGCGCCTCCACCGCCGCCGTCGCCGAGAACCTCATCGCCTGCCACGTGTACTCCTTCAGCTGCTTCCTCTTCTCCAGCCTGGTCGCCTCGGCGCTGAAGCAGGCGATTAGGATCATCAGCGGCGGCGATGGAGGGCAGGGTGTGGCCCACGCGCCGGCTCTGCGAGTGGGGATGGTGGCGTCGGCAGTCGGGTCGGTTCTCGGGTGCGGGTTTTTGGTGGCGGCGCTGCTGAATTTGGTTCAGATAAAATTGGGGACTTTCGGTTGCCGGCGGTGGGAGACGGTGGCGGCCGCCGTGCCGTTGGTGAGTTTGGTTCCGTTGGCGCTTTTCATTTACATCGCTCTTGTTCTTCACGCCTTCACGCGCTAG

Protein sequence

MSGTPRRRSTSTRIHVMALDGIVNVNSLFTFAVFLGVAWYPTADPAANLLDDGDDGPCASTAAVAENLIACHVYSFSCFLFSSLVASALKQAIRIISGGDGGQGVAHAPALRVGMVASAVGSVLGCGFLVAALLNLVQIKLGTFGCRRWETVAAAVPLVSLVPLALFIYIALVLHAFTR

Homology

[Close]

BLAST of Lag0023285 vs. NCBI nr
Match: XP_011658339.1 (uncharacterized protein LOC101206623 [Cucumis sativus] >XP_031741170.1 uncharacterized protein LOC116403759 [Cucumis sativus])

HSP 1 Score: 310.8 bits (795), Expect = 7.4e-81
Identity = 159/179 (88.83%), Postives = 170/179 (94.97%), Query Frame = 0


Query: 1   MSGTPRRRSTSTRIHVMALDGIVNVNSLFTFAVFLGVAWYPTADPAANLLDDGDDGPCAS 60
           MS  PRRRSTSTRIH++ALDGIVNVNSLFTFAVFLGVAWYPTA+PAANLL D DDGPCA+
Sbjct: 1   MSVVPRRRSTSTRIHILALDGIVNVNSLFTFAVFLGVAWYPTANPAANLLPDDDDGPCAA 60

Query: 61  TAAVAENLIACHVYSFSCFLFSSLVASALKQAIRIISGGDGGQGVAHAPALRVGMVASAV 120
             +VAENLIACHVYSFSCFLFSSL+ASALKQAIR+I+GGDGGQG  HAPALRVGM+ASAV
Sbjct: 61  ADSVAENLIACHVYSFSCFLFSSLIASALKQAIRLITGGDGGQGETHAPALRVGMMASAV 120

Query: 121 GSVLGCGFLVAALLNLVQIKLGTFGCRRWETVAAAVPLVSLVPLALFIYIALVLHAFTR 180
           GSVLGCGFLVAALLNL+QIKLG FGCRRWETVAAAVPLVSLVPLALFIYIALV+HAFTR
Sbjct: 121 GSVLGCGFLVAALLNLIQIKLGVFGCRRWETVAAAVPLVSLVPLALFIYIALVIHAFTR 179

[Close]

BLAST of Lag0023285 vs. NCBI nr
Match: XP_008457431.1 (PREDICTED: uncharacterized protein LOC103497122 [Cucumis melo] >TYJ97365.1 uncharacterized protein E5676_scaffold194G001760 [Cucumis melo var. makuwa])

HSP 1 Score: 307.4 bits (786), Expect = 8.2e-80
Identity = 160/179 (89.39%), Postives = 168/179 (93.85%), Query Frame = 0


Query: 1   MSGTPRRRSTSTRIHVMALDGIVNVNSLFTFAVFLGVAWYPTADPAANLLDDGDDGPCAS 60
           MS  PRRRSTSTRIH++ALDGIVNVNSLFTFAVFLGVAWYPTA+PAANLL D DDGPCA+
Sbjct: 1   MSVVPRRRSTSTRIHILALDGIVNVNSLFTFAVFLGVAWYPTANPAANLLPDDDDGPCAA 60

Query: 61  TAAVAENLIACHVYSFSCFLFSSLVASALKQAIRIISGGDGGQGVAHAPALRVGMVASAV 120
             +VA+NLIACHVYSFSCFLFSSL+ASALKQAIRII GGDGGQG  HA ALRVGMVASAV
Sbjct: 61  ADSVAQNLIACHVYSFSCFLFSSLIASALKQAIRIIVGGDGGQGETHATALRVGMVASAV 120

Query: 121 GSVLGCGFLVAALLNLVQIKLGTFGCRRWETVAAAVPLVSLVPLALFIYIALVLHAFTR 180
           GSVLGCGFLVAALLNLVQIKLG FGCRRWETVAAAVPLVSLVPLALFIYIALV+HAFTR
Sbjct: 121 GSVLGCGFLVAALLNLVQIKLGIFGCRRWETVAAAVPLVSLVPLALFIYIALVIHAFTR 179

[Close]

BLAST of Lag0023285 vs. NCBI nr
Match: KAA0031767.1 (uncharacterized protein E6C27_scaffold848G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 303.5 bits (776), Expect = 1.2e-78
Identity = 158/179 (88.27%), Postives = 166/179 (92.74%), Query Frame = 0


Query: 1   MSGTPRRRSTSTRIHVMALDGIVNVNSLFTFAVFLGVAWYPTADPAANLLDDGDDGPCAS 60
           MS  PRRRSTSTRIH++ALDGIVNVNSLFTFAVFLGVAWYPTA+PAANLL D DDGPCA+
Sbjct: 1   MSVVPRRRSTSTRIHILALDGIVNVNSLFTFAVFLGVAWYPTANPAANLLPDDDDGPCAA 60

Query: 61  TAAVAENLIACHVYSFSCFLFSSLVASALKQAIRIISGGDGGQGVAHAPALRVGMVASAV 120
             +VA+NLIACHVYSFSCFLFSSL+ASALKQAIRII GGDGGQG  HA  LRVGMVASAV
Sbjct: 61  ADSVAQNLIACHVYSFSCFLFSSLIASALKQAIRIIVGGDGGQGETHATVLRVGMVASAV 120

Query: 121 GSVLGCGFLVAALLNLVQIKLGTFGCRRWETVAAAVPLVSLVPLALFIYIALVLHAFTR 180
           GSVLGCGFLVAALLNLVQIKLG FGCRRWETVAAAVPLVSLVP ALFIYIALV+HAFTR
Sbjct: 121 GSVLGCGFLVAALLNLVQIKLGIFGCRRWETVAAAVPLVSLVPSALFIYIALVIHAFTR 179

[Close]

BLAST of Lag0023285 vs. NCBI nr
Match: KAE8653265.1 (hypothetical protein Csa_020061 [Cucumis sativus] >KAE8653271.1 hypothetical protein Csa_023219 [Cucumis sativus])

HSP 1 Score: 298.1 bits (762), Expect = 5.0e-77
Identity = 153/172 (88.95%), Postives = 163/172 (94.77%), Query Frame = 0


Query: 1   MSGTPRRRSTSTRIHVMALDGIVNVNSLFTFAVFLGVAWYPTADPAANLLDDGDDGPCAS 60
           MS  PRRRSTSTRIH++ALDGIVNVNSLFTFAVFLGVAWYPTA+PAANLL D DDGPCA+
Sbjct: 1   MSVVPRRRSTSTRIHILALDGIVNVNSLFTFAVFLGVAWYPTANPAANLLPDDDDGPCAA 60

Query: 61  TAAVAENLIACHVYSFSCFLFSSLVASALKQAIRIISGGDGGQGVAHAPALRVGMVASAV 120
             +VAENLIACHVYSFSCFLFSSL+ASALKQAIR+I+GGDGGQG  HAPALRVGM+ASAV
Sbjct: 61  ADSVAENLIACHVYSFSCFLFSSLIASALKQAIRLITGGDGGQGETHAPALRVGMMASAV 120

Query: 121 GSVLGCGFLVAALLNLVQIKLGTFGCRRWETVAAAVPLVSLVPLALFIYIAL 173
           GSVLGCGFLVAALLNL+QIKLG FGCRRWETVAAAVPLVSLVPLALFIYIAL
Sbjct: 121 GSVLGCGFLVAALLNLIQIKLGVFGCRRWETVAAAVPLVSLVPLALFIYIAL 172

[Close]

BLAST of Lag0023285 vs. NCBI nr
Match: XP_022970573.1 (uncharacterized protein LOC111469508 [Cucurbita maxima])

HSP 1 Score: 298.1 bits (762), Expect = 5.0e-77
Identity = 155/179 (86.59%), Postives = 160/179 (89.39%), Query Frame = 0


Query: 1   MSGTPRRRSTSTRIHVMALDGIVNVNSLFTFAVFLGVAWYPTADPAANLLDDGDDGPCAS 60
           MS  PRRRS+STRIHVMALDGIVNVNSLFTFAVFLG+ WYPTADP  NLL D DDGPCA 
Sbjct: 1   MSVVPRRRSSSTRIHVMALDGIVNVNSLFTFAVFLGITWYPTADPTVNLLPDDDDGPCAP 60

Query: 61  TAAVAENLIACHVYSFSCFLFSSLVASALKQAIRIISGGDGGQGVAHAPALRVGMVASAV 120
            AA A++LIACHVYSFSCFLFSSLVASALKQAIRII   DGG G  HAPALRVGMVASAV
Sbjct: 61  AAAAAQSLIACHVYSFSCFLFSSLVASALKQAIRIIGSEDGGHGAVHAPALRVGMVASAV 120

Query: 121 GSVLGCGFLVAALLNLVQIKLGTFGCRRWETVAAAVPLVSLVPLALFIYIALVLHAFTR 180
           GSVLGCGFLVAALLNLVQIKLG FGCRRWETVAA VPLVSLVP+ALFIYI LVLHAFTR
Sbjct: 121 GSVLGCGFLVAALLNLVQIKLGIFGCRRWETVAAVVPLVSLVPMALFIYIVLVLHAFTR 179

The following BLAST results are available for this feature:

BLAST of Lag0023285 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011658339.1	7.4e-81	88.83	uncharacterized protein LOC101206623 [Cucumis sativus] >XP_031741170.1 uncharact...	[more]
XP_008457431.1	8.2e-80	89.39	PREDICTED: uncharacterized protein LOC103497122 [Cucumis melo] >TYJ97365.1 uncha...	[more]
KAA0031767.1	1.2e-78	88.27	uncharacterized protein E6C27_scaffold848G00060 [Cucumis melo var. makuwa]	[more]
KAE8653265.1	5.0e-77	88.95	hypothetical protein Csa_020061 [Cucumis sativus] >KAE8653271.1 hypothetical pro...	[more]
XP_022970573.1	5.0e-77	86.59	uncharacterized protein LOC111469508 [Cucurbita maxima]	[more]

BLAST of Lag0023285 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33430:SF9	BNAC03G75110D PROTEIN	coord: 4..179
None	No IPR available	PANTHER	PTHR33430	MATERNAL EFFECT EMBRYO ARREST PROTEIN	coord: 4..179

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0023285.1	Lag0023285.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane