Lag0023174 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0023174
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionZinc finger, C3HC4 type family protein
Locationchr7: 45382731 .. 45384038 (-)
RNA-Seq ExpressionLag0023174
SyntenyLag0023174
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTTCCATTCTCGCTCAGGTAACCAAGCATCCATACTCGGATGAATTTTCACAGCTGATTCCATTCCTTTTCCTCTTTTCCGGCGCTCTTTGATCTCATTTTCTTTTCCTTTTTGGTGGAATTTTGGATTTAATTGCAGGAGCGACTGCTTGGTGCTGCATTGGGAAGCCTATTCGCCGGGGTTGTTGTTTTTGAGCAGCGGAAAAGCTTGTACAGGTCCATTTCGGAAAACTATCCACCACCCACCCAATCTCCGGTATGCTTAAATTTCCTTTTCTGTAACCCTAATGCTCAACTTTTTATTGTTTGTGTTTGACCGTCGTTTCGAGATAATTAGGATGTTCGGAATTGTGGAAATGTAGATGTTTGGATGTTTGGGAATAAGGGGAGAATGTAATGAAATTATCAATTTTTTCAATAATGCCATTCAGGTTAAGTTATTTGTTAGTAGTTTTATATATATTTGGCATTAGTATTAATCTAAATTTGGCTTCATCTATATAATTTTTATGCTTTACTTTATTATCAATTAATTTATGTTAAATCTTTAATTTTTTCCCTAGAAAATTGAGGAATACTTATTTTGAGTATTGTAAAATAAAATATTAACCTAAGTCTAAATCTACATAGGATTTTAATTCATCAAAGAAAAATATGAAGTTTTGTATAAAAATATGGTCATTACTTCATTAGTGAAAGTTAAAATTGTAAAAGACCATTTAAGGACACCATTGGTATCAAGAAAATCCGTTATTGCTGTCATTTTGGATGCCTAGGCGTAGAGCATTTTGATTGCAGAAATCTGAGTGTCTACTCCTTGAACATTTGTGATAACTGGGATCTTAACAATCTTTGAGAAAACGTTGATTCAAAGGCAGAAGTATCTCAGAATAAGGAACTTAATATTCAATATTCATCCATAGGACAAGGATAACTGGATAAGATATATGGTACCTGGATTTTGTCCATCTGGCCTCTAGGAATGGTGATTAATGTGGACAGTCAGGATATATGTTATTTCGAAGGAATTATTGAGATTATATTTCATCTAAACTTTGCTCTTGGCCCACAAGTTGTCATACCTACAATATAGAATTGTTTAATGCAAGTTGTATCGTCTCTGAATTTATACTTCCATCTAGCAGCTAATCCATTAATCTAATAGCATCCTCTTTGGACCTACTTTAGATGAGAAAACCTGTACTAGCAAAGAAATATGGCCCAGAGGTTTCACACCTGTGGAATAGAGCTGTGGACCAGACATTTGGACCCGTGATTCAGGCTCTCAGTTCACGGGGATGGTGA

mRNA sequence

ATGATTTCCATTCTCGCTCAGGAGCGACTGCTTGGTGCTGCATTGGGAAGCCTATTCGCCGGGGTTGTTGTTTTTGAGCAGCGGAAAAGCTTGTACAGGTCCATTTCGGAAAACTATCCACCACCCACCCAATCTCCGATGAGAAAACCTGTACTAGCAAAGAAATATGGCCCAGAGGTTTCACACCTGTGGAATAGAGCTGTGGACCAGACATTTGGACCCGTGATTCAGGCTCTCAGTTCACGGGGATGGTGA

Coding sequence (CDS)

ATGATTTCCATTCTCGCTCAGGAGCGACTGCTTGGTGCTGCATTGGGAAGCCTATTCGCCGGGGTTGTTGTTTTTGAGCAGCGGAAAAGCTTGTACAGGTCCATTTCGGAAAACTATCCACCACCCACCCAATCTCCGATGAGAAAACCTGTACTAGCAAAGAAATATGGCCCAGAGGTTTCACACCTGTGGAATAGAGCTGTGGACCAGACATTTGGACCCGTGATTCAGGCTCTCAGTTCACGGGGATGGTGA

Protein sequence

MISILAQERLLGAALGSLFAGVVVFEQRKSLYRSISENYPPPTQSPMRKPVLAKKYGPEVSHLWNRAVDQTFGPVIQALSSRGW
Homology
[Close]
BLAST of Lag0023174 vs. NCBI nr
Match: XP_022156577.1 (uncharacterized protein LOC111023455 [Momordica charantia])

HSP 1 Score: 161.8 bits (408), Expect = 2.6e-36
Identity = 79/84 (94.05%), Postives = 82/84 (97.62%), Query Frame = 0 

Query: 1  MISILAQERLLGAALGSLFAGVVVFEQRKSLYRSISENYPPPTQSPMRKPVLAKKYGPEV 60
          MISILAQERLLGAALGS+FAGVVVFEQRKSLYRSISENYPP  QSPMRKPV+AKKYGPEV
Sbjct: 1  MISILAQERLLGAALGSVFAGVVVFEQRKSLYRSISENYPPANQSPMRKPVVAKKYGPEV 60

Query: 61 SHLWNRAVDQTFGPVIQALSSRGW 85
          SHLWNRAVDQTFGP+IQALSSRGW
Sbjct: 61 SHLWNRAVDQTFGPMIQALSSRGW 84

[Close]
BLAST of Lag0023174 vs. NCBI nr
Match: XP_004152895.1 (uncharacterized protein LOC101206005 isoform X2 [Cucumis sativus])

HSP 1 Score: 159.8 bits (403), Expect = 1.0e-35
Identity = 78/84 (92.86%), Postives = 81/84 (96.43%), Query Frame = 0 

Query: 1  MISILAQERLLGAALGSLFAGVVVFEQRKSLYRSISENYPPPTQSPMRKPVLAKKYGPEV 60
          MIS+LAQERLLG ALGS+FAGVVVFEQRKSLY+SISENYPP TQSPMRKPVLAKKYGPE 
Sbjct: 1  MISVLAQERLLGFALGSVFAGVVVFEQRKSLYQSISENYPPATQSPMRKPVLAKKYGPEF 60

Query: 61 SHLWNRAVDQTFGPVIQALSSRGW 85
          SHLWNRAVDQTFGPVIQALSSRGW
Sbjct: 61 SHLWNRAVDQTFGPVIQALSSRGW 84

[Close]
BLAST of Lag0023174 vs. NCBI nr
Match: KAG6607218.1 (hypothetical protein SDJN03_00560, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 159.1 bits (401), Expect = 1.7e-35
Identity = 77/84 (91.67%), Postives = 81/84 (96.43%), Query Frame = 0 

Query: 1  MISILAQERLLGAALGSLFAGVVVFEQRKSLYRSISENYPPPTQSPMRKPVLAKKYGPEV 60
          MISILAQERLLGAALGS+F GVVVFEQRKS+YRSISENYPP TQSPM+K VLAKKYGPE+
Sbjct: 1  MISILAQERLLGAALGSVFVGVVVFEQRKSIYRSISENYPPATQSPMKKAVLAKKYGPEI 60

Query: 61 SHLWNRAVDQTFGPVIQALSSRGW 85
          SHLWNRAVDQTFGPVIQALSSRGW
Sbjct: 61 SHLWNRAVDQTFGPVIQALSSRGW 84

[Close]
BLAST of Lag0023174 vs. NCBI nr
Match: XP_023519919.1 (uncharacterized protein LOC111783242 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 158.3 bits (399), Expect = 2.9e-35
Identity = 78/84 (92.86%), Postives = 80/84 (95.24%), Query Frame = 0 

Query: 1  MISILAQERLLGAALGSLFAGVVVFEQRKSLYRSISENYPPPTQSPMRKPVLAKKYGPEV 60
          MISILAQERLLGAALGS+FAGVVVFEQRKSLY SIS+NYPP TQSPMRKPVLAKKYGPE 
Sbjct: 1  MISILAQERLLGAALGSVFAGVVVFEQRKSLYESISKNYPPTTQSPMRKPVLAKKYGPEF 60

Query: 61 SHLWNRAVDQTFGPVIQALSSRGW 85
          SHLWN AVDQTFGPVIQALSSRGW
Sbjct: 61 SHLWNSAVDQTFGPVIQALSSRGW 84

[Close]
BLAST of Lag0023174 vs. NCBI nr
Match: XP_008457526.1 (PREDICTED: uncharacterized protein LOC103497197 isoform X2 [Cucumis melo] >KAA0033888.1 uncharacterized protein E6C27_scaffold43059G00730 [Cucumis melo var. makuwa] >TYK01272.1 uncharacterized protein E5676_scaffold49G00590 [Cucumis melo var. makuwa])

HSP 1 Score: 157.9 bits (398), Expect = 3.8e-35
Identity = 77/84 (91.67%), Postives = 80/84 (95.24%), Query Frame = 0 

Query: 1  MISILAQERLLGAALGSLFAGVVVFEQRKSLYRSISENYPPPTQSPMRKPVLAKKYGPEV 60
          MIS+LAQERLLG ALGS FAGVVVFEQRKSLY+SISENYPP TQSPMRKPVLAKKYGPE 
Sbjct: 1  MISVLAQERLLGFALGSAFAGVVVFEQRKSLYQSISENYPPATQSPMRKPVLAKKYGPEF 60

Query: 61 SHLWNRAVDQTFGPVIQALSSRGW 85
          SHLWNRAVDQTFGP+IQALSSRGW
Sbjct: 61 SHLWNRAVDQTFGPMIQALSSRGW 84

The following BLAST results are available for this feature:
BLAST of Lag0023174 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022156577.12.6e-3694.05uncharacterized protein LOC111023455 [Momordica charantia][more]
XP_004152895.11.0e-3592.86uncharacterized protein LOC101206005 isoform X2 [Cucumis sativus][more]
KAG6607218.11.7e-3591.67hypothetical protein SDJN03_00560, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023519919.12.9e-3592.86uncharacterized protein LOC111783242 [Cucurbita pepo subsp. pepo][more]
XP_008457526.13.8e-3591.67PREDICTED: uncharacterized protein LOC103497197 isoform X2 [Cucumis melo] >KAA00... [more]
BLAST of Lag0023174 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37720OS10G0481400 PROTEINcoord: 1..84
NoneNo IPR availablePANTHERPTHR37720:SF2OS10G0481400 PROTEINcoord: 1..84

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0023174.1Lag0023174.1mRNA