Lag0023171 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0023171
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	eukaryotic translation initiation factor 4B3-like
Location	chr7: 45364741 .. 45365106 (-)
RNA-Seq Expression	Lag0023171
Synteny	Lag0023171

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCAATGGTTTCTCCATGGGGAAAACCAGGCGCTTGGGCCCTCGACTCCGAGGAACACGAATCTCAACTCCTTAAAGAAGAGGAACAACAACAGAAACAATCAGAGCTCAGCTTGAATTTTCCCTCCCTCAACGACGCATTGGCCACCAAACCGAAGAAGATAGGACAAACTCTCTCGTTGGCGGAGTTCAACGCCTATGGTGGCAGCGGCTCAAGATCTTCTTCGCAGGGCCACACGCATGAAGATTTCACTCTGCGTCTCTTCTGCAAGATTCCCCAGGCTTTTTTTTTTCCGTATACATCTGGGTTTTTTTGCCGTACTGATTTTCTTTTTGACGTATCTTCTACGTTTCCCTGTTAA

mRNA sequence

ATGGCGGCAATGGTTTCTCCATGGGGAAAACCAGGCGCTTGGGCCCTCGACTCCGAGGAACACGAATCTCAACTCCTTAAAGAAGAGGAACAACAACAGAAACAATCAGAGCTCAGCTTGAATTTTCCCTCCCTCAACGACGCATTGGCCACCAAACCGAAGAAGATAGGACAAACTCTCTCGTTGGCGGAGTTCAACGCCTATGGTGGCAGCGGCTCAAGATCTTCTTCGCAGGGCCACACGCATGAAGATTTCACTCTGCGTCTCTTCTGCAAGATTCCCCAGGCTTTTTTTTTTCCGTATACATCTGGGTTTTTTTGCCGTACTGATTTTCTTTTTGACGTATCTTCTACGTTTCCCTGTTAA

Coding sequence (CDS)

ATGGCGGCAATGGTTTCTCCATGGGGAAAACCAGGCGCTTGGGCCCTCGACTCCGAGGAACACGAATCTCAACTCCTTAAAGAAGAGGAACAACAACAGAAACAATCAGAGCTCAGCTTGAATTTTCCCTCCCTCAACGACGCATTGGCCACCAAACCGAAGAAGATAGGACAAACTCTCTCGTTGGCGGAGTTCAACGCCTATGGTGGCAGCGGCTCAAGATCTTCTTCGCAGGGCCACACGCATGAAGATTTCACTCTGCGTCTCTTCTGCAAGATTCCCCAGGCTTTTTTTTTTCCGTATACATCTGGGTTTTTTTGCCGTACTGATTTTCTTTTTGACGTATCTTCTACGTTTCCCTGTTAA

Protein sequence

MAAMVSPWGKPGAWALDSEEHESQLLKEEEQQQKQSELSLNFPSLNDALATKPKKIGQTLSLAEFNAYGGSGSRSSSQGHTHEDFTLRLFCKIPQAFFFPYTSGFFCRTDFLFDVSSTFPC

Homology

[Close]

BLAST of Lag0023171 vs. NCBI nr
Match: XP_022135918.1 (eukaryotic translation initiation factor 4B3-like [Momordica charantia])

HSP 1 Score: 140.6 bits (353), Expect = 9.0e-30
Identity = 73/89 (82.02%), Postives = 80/89 (89.89%), Query Frame = 0


Query: 1  MAAMVSPWGKPGAWALDSEEHESQLLKEEEQQQKQSELSLNFPSLNDALATKPKKIGQTL 60
          MAAMVSPWGKPGAWALDSEEHE+QLLKEE++QQKQ+EL L+FPSLNDALATK KK GQTL
Sbjct: 1  MAAMVSPWGKPGAWALDSEEHEAQLLKEEQEQQKQAELGLDFPSLNDALATKQKKKGQTL 60

Query: 61 SLAEFNAYGGSGSRSSS-----QGHTHED 85
          SLAEFNAYGGSG+RSS+     QG THED
Sbjct: 61 SLAEFNAYGGSGTRSSAHTAAPQGLTHED 89

[Close]

BLAST of Lag0023171 vs. NCBI nr
Match: XP_022989048.1 (eukaryotic translation initiation factor 4B3-like [Cucurbita maxima])

HSP 1 Score: 134.8 bits (338), Expect = 4.9e-28
Identity = 70/87 (80.46%), Postives = 77/87 (88.51%), Query Frame = 0


Query: 1  MAAMVSPWGKPGAWALDSEEHESQLLKEE---EQQQKQSELSLNFPSLNDALATKPKKIG 60
          M AM SPWGKPGAWALDSEEHE++LLKEE   EQQQK++ELSL+FPSLNDALATK KK G
Sbjct: 1  MPAMASPWGKPGAWALDSEEHEAELLKEEQEQEQQQKKAELSLDFPSLNDALATKQKKKG 60

Query: 61 QTLSLAEFNAYGGSGSRSSSQGHTHED 85
          QTLSLAEF A+GGSGS+ SSQG THED
Sbjct: 61 QTLSLAEFTAHGGSGSKYSSQGRTHED 87

[Close]

BLAST of Lag0023171 vs. NCBI nr
Match: XP_038887905.1 (eukaryotic translation initiation factor 4B3-like isoform X2 [Benincasa hispida])

HSP 1 Score: 133.3 bits (334), Expect = 1.4e-27
Identity = 70/84 (83.33%), Postives = 75/84 (89.29%), Query Frame = 0


Query: 1  MAAMVSPWGKPGAWALDSEEHESQLLKEEEQQQKQSELSLNFPSLNDALATKPKKIGQTL 60
          MAAMVSPWGKPGAWALDSEEHE+QLLKE+E  QKQ+ELSL+FPSLNDALATK KK GQTL
Sbjct: 1  MAAMVSPWGKPGAWALDSEEHEAQLLKEQE-LQKQAELSLDFPSLNDALATKQKKKGQTL 60

Query: 61 SLAEFNAYGGSGSRSSSQGHTHED 85
          SLAEFN YG +GSRSSSQ   HED
Sbjct: 61 SLAEFNTYGSTGSRSSSQSLRHED 83

[Close]

BLAST of Lag0023171 vs. NCBI nr
Match: XP_038887904.1 (eukaryotic translation initiation factor 4B3-like isoform X1 [Benincasa hispida])

HSP 1 Score: 133.3 bits (334), Expect = 1.4e-27
Identity = 70/84 (83.33%), Postives = 75/84 (89.29%), Query Frame = 0


Query: 1  MAAMVSPWGKPGAWALDSEEHESQLLKEEEQQQKQSELSLNFPSLNDALATKPKKIGQTL 60
          MAAMVSPWGKPGAWALDSEEHE+QLLKE+E  QKQ+ELSL+FPSLNDALATK KK GQTL
Sbjct: 1  MAAMVSPWGKPGAWALDSEEHEAQLLKEQE-LQKQAELSLDFPSLNDALATKQKKKGQTL 60

Query: 61 SLAEFNAYGGSGSRSSSQGHTHED 85
          SLAEFN YG +GSRSSSQ   HED
Sbjct: 61 SLAEFNTYGSTGSRSSSQSLRHED 83

[Close]

BLAST of Lag0023171 vs. NCBI nr
Match: XP_023529687.1 (eukaryotic translation initiation factor 4B3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 131.0 bits (328), Expect = 7.1e-27
Identity = 68/88 (77.27%), Postives = 76/88 (86.36%), Query Frame = 0


Query: 1  MAAMVSPWGKPGAWALDSEEHESQLLKEE----EQQQKQSELSLNFPSLNDALATKPKKI 60
          M AM SPWGKPGAWALDSEEHE++LLKEE    +QQQK++ELSL+FPSLNDALATK KK 
Sbjct: 1  MPAMASPWGKPGAWALDSEEHEAELLKEEQEQQQQQQKKAELSLDFPSLNDALATKQKKK 60

Query: 61 GQTLSLAEFNAYGGSGSRSSSQGHTHED 85
          GQTLSLAEF A+ GSGS+ SSQG THED
Sbjct: 61 GQTLSLAEFTAHAGSGSKYSSQGRTHED 88

[Close]

BLAST of Lag0023171 vs. ExPASy Swiss-Prot
Match: Q9SZP8 (Eukaryotic translation initiation factor 4B3 OS=Arabidopsis thaliana OX=3702 GN=EIF4B3 PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 4.8e-10
Identity = 39/80 (48.75%), Postives = 54/80 (67.50%), Query Frame = 0


Query: 2  AAMVSPWGKPGAWALDSEEHESQLLKEEE--QQQKQSELSLNFPSLNDALATK-PKKIGQ 61
          AA+ S W KPGAWAL++EEHE++L ++     Q+  +E S +FPSL  A  TK  KK GQ
Sbjct: 3  AAVSSVWAKPGAWALEAEEHEAELKQQPSPTNQKSSAEDSSDFPSLAAAATTKTKKKKGQ 62

Query: 62 TLSLAEFNAYGGSGSRSSSQ 79
          T+SLAEF  YG + ++ + Q
Sbjct: 63 TISLAEFATYGTAKAKPAPQ 82

[Close]

BLAST of Lag0023171 vs. ExPASy Swiss-Prot
Match: Q9AUJ7 (Eukaryotic translation initiation factor 4B1 OS=Triticum aestivum OX=4565 GN=EIF4B PE=1 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 3.0e-04
Identity = 30/85 (35.29%), Postives = 45/85 (52.94%), Query Frame = 0


Query: 4  MVSPWGKPGAWALDSEEHESQLLKEEEQQQKQSEL-----------SLNFPSLNDALAT- 63
          M  PWG  GAWALD+E       +E+E+++  +             + +FPSL +A+   
Sbjct: 1  MAKPWGGVGAWALDAE-------REDEEREHAAAFPAPDPPAAAGGAASFPSLKEAVVAG 60

Query: 64 ---KPKKIGQTLSLAEFNAYGGSGS 74
             + KK G TLSL+EF  YG +G+
Sbjct: 61 GGKQKKKKGTTLSLSEFTTYGAAGA 78

The following BLAST results are available for this feature:

BLAST of Lag0023171 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022135918.1	9.0e-30	82.02	eukaryotic translation initiation factor 4B3-like [Momordica charantia]	[more]
XP_022989048.1	4.9e-28	80.46	eukaryotic translation initiation factor 4B3-like [Cucurbita maxima]	[more]
XP_038887905.1	1.4e-27	83.33	eukaryotic translation initiation factor 4B3-like isoform X2 [Benincasa hispida]	[more]
XP_038887904.1	1.4e-27	83.33	eukaryotic translation initiation factor 4B3-like isoform X1 [Benincasa hispida]	[more]
XP_023529687.1	7.1e-27	77.27	eukaryotic translation initiation factor 4B3 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lag0023171 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SZP8	4.8e-10	48.75	Eukaryotic translation initiation factor 4B3 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q9AUJ7	3.0e-04	35.29	Eukaryotic translation initiation factor 4B1 OS=Triticum aestivum OX=4565 GN=EIF...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 16..36
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..32
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..32
None	No IPR available	PANTHER	PTHR32091:SF17	EUKARYOTIC TRANSLATION INITIATION FACTOR 4B3	coord: 1..84
IPR010433	Plant specific eukaryotic initiation factor 4B	PFAM	PF06273	eIF-4B	coord: 4..85 e-value: 1.2E-10 score: 41.1
IPR010433	Plant specific eukaryotic initiation factor 4B	PANTHER	PTHR32091	EUKARYOTIC TRANSLATION INITIATION FACTOR 4B	coord: 1..84

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0023171.1	Lag0023171.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006413	translational initiation
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003743	translation initiation factor activity