Lag0023152 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0023152
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRNase H domain-containing protein
Locationchr7: 45009454 .. 45009981 (-)
RNA-Seq ExpressionLag0023152
SyntenyLag0023152
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGAGAATCTCAACAAGGAGGATACAACAAAGGGGGCTATTATTATGTGGAGACTATGGAATCACGGAAATAGAAACCACACCTCAAACACCATGGAAGCACCAACCGTCTTAATCAAGGAAATTGAGAGCAATATAAAAGAGTGGGAAAGTTCTTACCTTAAGAATCCCAAACCGAAAAGACTAAGGAGTCAAGTGAGTCTCGTCGTCTGGAAGAAACCAAAGCCAAACTTCTGGAAATTGAACACGGGCGCAACGTGGTTCGACGCTAGGGGAGCTGGAGGCCTCGGATGGGTGGTGCACGACTCGAATGGGTCCTTAGTCTGTTTCGGCGTCCAAAGAATTACACGAAAATGGGAAATCAAATTACTGGAAGCAAAAACAATTCTTCTGGGAATCAAGGAGATTAATCAAACCTTGTCTCCAAAATCAATTGGGGCTGGAAGTCGAATTGGACGCCCTTACAGTGATCAAAGTCCTGCCCGGAGAAGAAGAAGACCTATCAGAGCTGCTCCTAATTGTTGA

mRNA sequence

ATGGTGGAGAATCTCAACAAGGAGGATACAACAAAGGGGGCTATTATTATGTGGAGACTATGGAATCACGGAAATAGAAACCACACCTCAAACACCATGGAAGCACCAACCGTCTTAATCAAGGAAATTGAGAGCAATATAAAAGAGTGGGAAAGTTCTTACCTTAAGAATCCCAAACCGAAAAGACTAAGGAGTCAAGTGAGTCTCGTCGTCTGGAAGAAACCAAAGCCAAACTTCTGGAAATTGAACACGGGCGCAACGTGGTTCGACGCTAGGGGAGCTGGAGGCCTCGGATGGGTGGTGCACGACTCGAATGGGTCCTTAGTCTGTTTCGGCGTCCAAAGAATTACACGAAAATGGGAAATCAAATTACTGGAAGCAAAAACAATTCTTCTGGGAATCAAGGAGATTAATCAAACCTTGTCTCCAAAATCAATTGGGGCTGGAAGTCGAATTGGACGCCCTTACAGTGATCAAAGTCCTGCCCGGAGAAGAAGAAGACCTATCAGAGCTGCTCCTAATTGTTGA

Coding sequence (CDS)

ATGGTGGAGAATCTCAACAAGGAGGATACAACAAAGGGGGCTATTATTATGTGGAGACTATGGAATCACGGAAATAGAAACCACACCTCAAACACCATGGAAGCACCAACCGTCTTAATCAAGGAAATTGAGAGCAATATAAAAGAGTGGGAAAGTTCTTACCTTAAGAATCCCAAACCGAAAAGACTAAGGAGTCAAGTGAGTCTCGTCGTCTGGAAGAAACCAAAGCCAAACTTCTGGAAATTGAACACGGGCGCAACGTGGTTCGACGCTAGGGGAGCTGGAGGCCTCGGATGGGTGGTGCACGACTCGAATGGGTCCTTAGTCTGTTTCGGCGTCCAAAGAATTACACGAAAATGGGAAATCAAATTACTGGAAGCAAAAACAATTCTTCTGGGAATCAAGGAGATTAATCAAACCTTGTCTCCAAAATCAATTGGGGCTGGAAGTCGAATTGGACGCCCTTACAGTGATCAAAGTCCTGCCCGGAGAAGAAGAAGACCTATCAGAGCTGCTCCTAATTGTTGA

Protein sequence

MVENLNKEDTTKGAIIMWRLWNHGNRNHTSNTMEAPTVLIKEIESNIKEWESSYLKNPKPKRLRSQVSLVVWKKPKPNFWKLNTGATWFDARGAGGLGWVVHDSNGSLVCFGVQRITRKWEIKLLEAKTILLGIKEINQTLSPKSIGAGSRIGRPYSDQSPARRRRRPIRAAPNC
Homology
BLAST of Lag0023152 vs. NCBI nr
Match: XP_022143317.1 (uncharacterized protein LOC111013216 [Momordica charantia])

HSP 1 Score: 79.3 bits (194), Expect = 3.6e-11
Identity = 50/156 (32.05%), Postives = 77/156 (49.36%), Query Frame = 0

Query: 1   MVENLNKEDTTKGAIIMWRLWNHGNRN----HTSNTMEAPTVLIKEIESN------IKEW 60
           +V  L+ E+     +I W++W   NR+     T +  +    ++  I SN      I + 
Sbjct: 22  LVNMLSDEEVATSMVIAWQIWESRNRSIFRGETIDEQQLDRSIVLFINSNIDKGTCISQT 81

Query: 61  ESSYLKNPKPKRLRSQVSL--VVWKKPKPNFWKLNTGATWFDARGAGGLGWVVHDSNGSL 120
             S   +    R R  +++  V W  P  N WKLNT A+W + R  GG+GW++ D  G +
Sbjct: 82  RRSQQNDGYLPRGRENLNMLGVRWSAPPTNCWKLNTDASWSEEREVGGIGWILCDCRGEI 141

Query: 121 VCFGVQRITRKWEIKLLEAKTILLGIKEIN-QTLSP 144
           V  G  +I  K EI  LE  TI+ G++ IN Q+ SP
Sbjct: 142 VLAGNCKIREKKEINALELMTIIRGLQFINMQSRSP 177

BLAST of Lag0023152 vs. NCBI nr
Match: XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia])

HSP 1 Score: 67.8 bits (164), Expect = 1.1e-07
Identity = 38/138 (27.54%), Postives = 67/138 (48.55%), Query Frame = 0

Query: 1   MVENLNKEDTTKGAIIMWRLWNHGNRNHTSNTMEAPTVLIKEIESNIKEWESSYLKNPKP 60
           M++  + ED     I  W +WNH N         + + +I+++   +   ESSY      
Sbjct: 1   MLDKASDEDLDVLLIGSWVIWNHRNYVIFRGEHSSFSTMIQQLTKFVT--ESSYQSETSL 60

Query: 61  KRLRSQV-SLVVWKKPKPNFWKLNTGATWFDARGAGGLGWVVHDSNGSLVCFGVQRITRK 120
             L   + + + W+ P  + W LN  A+W D+   GG+GW++   +G +V  G + +   
Sbjct: 61  SMLHKTLNNKLKWEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEAC 120

Query: 121 WEIKLLEAKTILLGIKEI 138
             +KLLEA  IL G++ +
Sbjct: 121 NNVKLLEASAILEGLRNL 136

BLAST of Lag0023152 vs. NCBI nr
Match: KAG6599977.1 (hypothetical protein SDJN03_05210, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 64.7 bits (156), Expect = 9.1e-07
Identity = 28/65 (43.08%), Postives = 43/65 (66.15%), Query Frame = 0

Query: 81  KLNTGATWFDARGAGGLGWVVHDSNGSLVCFGVQRITRKWEIKLLEAKTILLGIKE---I 140
           KLN+ A+W +  G GG+ WV+HDS GS +C   + + RKW +K+LE K ++ G+K    I
Sbjct: 7   KLNSYASWSEEAGKGGVSWVIHDSLGSSICIECKELRRKWLVKMLEGKAMIEGLKTYLLI 66

Query: 141 NQTLS 143
            +T+S
Sbjct: 67  RETVS 71

BLAST of Lag0023152 vs. NCBI nr
Match: XP_042980091.1 (uncharacterized protein LOC122310272 [Carya illinoinensis])

HSP 1 Score: 63.9 bits (154), Expect = 1.5e-06
Identity = 43/145 (29.66%), Postives = 71/145 (48.97%), Query Frame = 0

Query: 1   MVENLNKEDTTKGAIIMWRLWNHGNRNHTSNTMEAPTVLIKEIESNIKEWESSYLKNPKP 60
           M+E LNKE+  + A+I+  +W   N     N+   P ++I+  +  +K+++ +  K    
Sbjct: 15  MIEILNKEELAEAALIVRLIWFRRNNLLHENSYSPPGLIIQAAKKEMKDFKEATGKPQIN 74

Query: 61  KRLRSQVSLVVWKKPKPNFWKLNTGATWFDARGAGGLGWVVHDSNGSLVCFGVQRITRKW 120
               S  +L +WKKP  NF+KLN G          G+G ++ DSNG ++  G  + TR+ 
Sbjct: 75  LVHNSDQTLSLWKKPPENFYKLNWGTATDKGAAKVGIGAIIRDSNGQVI--GSLQATRQL 134

Query: 121 EIKLLEAKTILLGI-----KEINQT 141
                 A++  L I     KEI  T
Sbjct: 135 TSDQFTAESYALLIATTFSKEIGTT 157

BLAST of Lag0023152 vs. NCBI nr
Match: MCH94979.1 (cytochrome P450 [Trifolium medium])

HSP 1 Score: 63.2 bits (152), Expect = 2.6e-06
Identity = 40/128 (31.25%), Postives = 63/128 (49.22%), Query Frame = 0

Query: 12  KGAIIMWRLWNHGNRNHTSNTMEAPTVLIKEIESNIKEWESSYLKNPKPKRLRSQVSLVV 71
           K A+++W LWN+ N    +NT E+   L  + +    EW +  ++N +      Q  +  
Sbjct: 33  KVAMLIWVLWNNRNNCVWNNTKESGQQLGYKAKCLWNEWNA--VQNIRGSTRIRQQQVHS 92

Query: 72  WKKPKPNFWKLNTGATWFDARGAGGLGWVVHDSNGSLVCFGVQRITRKWEIKLLEAKTIL 131
           W+KP+  ++K N  A + +A G   +GW V DS G  V  G   I  +  I   EA  IL
Sbjct: 93  WQKPQQQWYKCNVDAGFHNAAGKTSVGWCVRDSTGRFVITGSSWINGRCSIMEGEAIAIL 152

Query: 132 LGIKEINQ 140
             +KE+ Q
Sbjct: 153 EAMKELQQ 158

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022143317.13.6e-1132.05uncharacterized protein LOC111013216 [Momordica charantia][more]
XP_022155262.11.1e-0727.54uncharacterized protein LOC111022403 [Momordica charantia][more]
KAG6599977.19.1e-0743.08hypothetical protein SDJN03_05210, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_042980091.11.5e-0629.66uncharacterized protein LOC122310272 [Carya illinoinensis][more]
MCH94979.12.6e-0631.25cytochrome P450 [Trifolium medium][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 146..175

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0023152.1Lag0023152.1mRNA