Lag0023134 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0023134
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRetrotransposon protein
Locationchr7: 44754490 .. 44755521 (-)
RNA-Seq ExpressionLag0023134
SyntenyLag0023134
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTCCATAACCCCACATGAACTTGTGTCCGTACTTTCAATAATGGCTGACTCTCAGCGCCAACTATTCAACCTGATTAACTCTTTCATGAACAACCAGCCTAGGATAGAAAGCCAAACTCCATACCTCAGACACCAGATAAGACAGTTAGCCTGCTTCCGGTTGATTCATGAAAGTGACCTATGCTGTCGAGAAAGCACCAGGATGGATAGGAGATGCTTTGCCATTCTATGTAGTCTGTTGAGAATGACGTTCGGGTTGGTAGGAACGGAAATCGTAAACGTGGAAGAGATGGTCGCGATGTTCTTGCACATCATTGCTCATGATGTTAAGAATCGAGTCATTAGAAGACAGTTTGCACGGTCGGGCGAAACCGTTTCTCGACACTTCAACGCGACTTTGAGTGTCATACTACGATTGTACGACGTTCTACTTAAGAAACCTGAACCGATCACGGCTTCTTGCCAAGATGGGAGGTGGAAATGGTTTGAGATATGGATACTATACGTTTGTACACATCGTTAAGATTTTACAACGTTCTTTTGACATTTGTAATGCAATGTGGAAACAAAATTGTTTAGGTGCATTGGACGATACATACGTAAAGGTCTATGTGAGTGCAGCTGATCGACCAAGGTATAGGTCACGGAAGGGTGAGATTGCAACAAATGTGTTGGACGTTGTGTCGCCAAAAGGTGAATTCATTTTTGTTATGCCGAGATAGGAAGGTTCGGCTGCTGATTCTCGTGTACTCAGAGATGCTATATCACGCCCCAATGGAATAATAGTGCCGAAGGGTATGGAACGAAGTATGAATGTAAAATAGGATCGCTTACGTAATCCTTAGGTATTAACCATTTTTTATGAACAGGTTACTACTACCTCTGTGATGCTGGGTACCCAAACGCAGATGGTTTCTTGGCACCTTACAAAGGAGAGCGGTACCACTTAACCGAGTGGCGTGGGGGGAGGAAATCCACCTACTACACCAAGAGAGTTCTTCAACATGAAGCATTCTCCTGCACATAA

mRNA sequence

ATGGATTCCATAACCCCACATGAACTTGTGTCCGTACTTTCAATAATGGCTGACTCTCAGCGCCAACTATTCAACCTGATTAACTCTTTCATGAACAACCAGCCTAGGATAGAAAGCCAAACTCCATACCTCAGACACCAGATAAGACAGTTAGCCTGCTTCCGGTTGATTCATGAAAGTGACCTATGCTGTCGAGAAAGCACCAGGATGGATAGGAGATGCTTTGCCATTCTATGTAGTCTGTTGAGAATGACGTTCGGGTTGGTAGGAACGGAAATCGTAAACGTGGAAGAGATGGTCGCGATGTTCTTGCACATCATTGCTCATGATGTTAAGAATCGAGTCATTAGAAGACAGTTTGCACGGTCGGGCGAAACCGTTTCTCGACACTTCAACGCGACTTTGAGTGTCATACTACGATTGTACGACGTTCTACTTAAGAAACCTGAACCGATCACGGCTTCTTGCCAAGATGGGAGGTGGAAATGGTTTGAGATATGGATACTATACGTTTGTACACATCGTGCATTGGACGATACATACGTAAAGGTCTATGTGAGTGCAGCTGATCGACCAAGGTATAGGTCACGGAAGGGTGAGATTGCAACAAATGTGTTGGACGTTGTGTCGCCAAAAGGTTACTACTACCTCTGTGATGCTGGGTACCCAAACGCAGATGGTTTCTTGGCACCTTACAAAGGAGAGCGGTACCACTTAACCGAGTGGCGTGGGGGGAGGAAATCCACCTACTACACCAAGAGAGTTCTTCAACATGAAGCATTCTCCTGCACATAA

Coding sequence (CDS)

ATGGATTCCATAACCCCACATGAACTTGTGTCCGTACTTTCAATAATGGCTGACTCTCAGCGCCAACTATTCAACCTGATTAACTCTTTCATGAACAACCAGCCTAGGATAGAAAGCCAAACTCCATACCTCAGACACCAGATAAGACAGTTAGCCTGCTTCCGGTTGATTCATGAAAGTGACCTATGCTGTCGAGAAAGCACCAGGATGGATAGGAGATGCTTTGCCATTCTATGTAGTCTGTTGAGAATGACGTTCGGGTTGGTAGGAACGGAAATCGTAAACGTGGAAGAGATGGTCGCGATGTTCTTGCACATCATTGCTCATGATGTTAAGAATCGAGTCATTAGAAGACAGTTTGCACGGTCGGGCGAAACCGTTTCTCGACACTTCAACGCGACTTTGAGTGTCATACTACGATTGTACGACGTTCTACTTAAGAAACCTGAACCGATCACGGCTTCTTGCCAAGATGGGAGGTGGAAATGGTTTGAGATATGGATACTATACGTTTGTACACATCGTGCATTGGACGATACATACGTAAAGGTCTATGTGAGTGCAGCTGATCGACCAAGGTATAGGTCACGGAAGGGTGAGATTGCAACAAATGTGTTGGACGTTGTGTCGCCAAAAGGTTACTACTACCTCTGTGATGCTGGGTACCCAAACGCAGATGGTTTCTTGGCACCTTACAAAGGAGAGCGGTACCACTTAACCGAGTGGCGTGGGGGGAGGAAATCCACCTACTACACCAAGAGAGTTCTTCAACATGAAGCATTCTCCTGCACATAA

Protein sequence

MDSITPHELVSVLSIMADSQRQLFNLINSFMNNQPRIESQTPYLRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSLLRMTFGLVGTEIVNVEEMVAMFLHIIAHDVKNRVIRRQFARSGETVSRHFNATLSVILRLYDVLLKKPEPITASCQDGRWKWFEIWILYVCTHRALDDTYVKVYVSAADRPRYRSRKGEIATNVLDVVSPKGYYYLCDAGYPNADGFLAPYKGERYHLTEWRGGRKSTYYTKRVLQHEAFSCT
Homology
BLAST of Lag0023134 vs. NCBI nr
Match: KAA0034843.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 294.3 bits (752), Expect = 1.1e-75
Identity = 154/282 (54.61%), Postives = 187/282 (66.31%), Query Frame = 0

Query: 7   HELVSVLSIMADSQRQLFNLINSFMNNQPRIESQTPY-LRHQIRQLACFRLIHESDLCCR 66
           HEL S+++    SQRQL  ++    N+  RI +  PY  RH+IRQLA FR+IH SDL CR
Sbjct: 4   HELASIVNAFIASQRQLLLMLELLKNDTKRI-THIPYETRHRIRQLAYFRMIHGSDLVCR 63

Query: 67  ESTRMDRRCFAILCSLLRMTFGLVGTEIVNVEEMVAMFLHIIAHDVKNRVIRRQFARSGE 126
           +STRMDRRCFAILC LLR   GL  TE+V+VEEMVAMFLHI+AHDVKNRVI+R+F RSGE
Sbjct: 64  QSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGE 123

Query: 127 TVSRHFNATLSVILRLYDVLLKKPEPITASCQDGRWKWFEIWILYVCTHRALDDTYVKVY 186
           T+SRHFN  L  ++RL+D LLKKP+P+   C D RW+WFE  +       ALD TY+KV 
Sbjct: 124 TISRHFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFENCL------GALDGTYIKVN 183

Query: 187 VSAADRPRYRSRKGEIATNVLDVVS----------------------------------P 246
           V A+DR RYR+RKGE+ATNVL V                                    P
Sbjct: 184 VPASDRARYRTRKGEVATNVLGVYDTKGDFVYVLTGWEGSAADSRILRDALSRPNRLKVP 243

Query: 247 KGYYYLCDAGYPNADGFLAPYKGERYHLTEWRGGRKSTYYTK 254
           KGYYYL DAGYPNA+GFLAPY+G+RYHL EWRG + +   +K
Sbjct: 244 KGYYYLVDAGYPNAEGFLAPYRGQRYHLQEWRGPKNAPSTSK 278

BLAST of Lag0023134 vs. NCBI nr
Match: KAA0046727.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0052100.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0056032.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0059561.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0065497.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 293.9 bits (751), Expect = 1.4e-75
Identity = 153/273 (56.04%), Postives = 183/273 (67.03%), Query Frame = 0

Query: 7   HELVSVLSIMADSQRQLFNLINSFMNNQPRIESQTPY-LRHQIRQLACFRLIHESDLCCR 66
           HEL S+++    SQRQL  ++    N+  RI +  PY  RH+IRQLA FR+IH SDL CR
Sbjct: 4   HELASIVNAFIASQRQLLLMLELLKNDTKRI-THIPYETRHRIRQLAYFRMIHGSDLVCR 63

Query: 67  ESTRMDRRCFAILCSLLRMTFGLVGTEIVNVEEMVAMFLHIIAHDVKNRVIRRQFARSGE 126
           +STRMDRRCFAILC LLR   GL  TE+V+VEEMVAMFLHI+AHDVKNRVI+R+F RSGE
Sbjct: 64  QSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGE 123

Query: 127 TVSRHFNATLSVILRLYDVLLKKPEPITASCQDGRWKWFEIWILYVCTHRALDDTYVKVY 186
           T+SRHFN  L  ++RL+D LLKKP+P+   C D RW+WFE  +       ALD TY+KV 
Sbjct: 124 TISRHFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFENCL------GALDGTYIKVN 183

Query: 187 VSAADRPRYRSRKGEIATNVLDVVS----------------------------------P 245
           V A+DR RYR+RKGE+ATNVL V                                    P
Sbjct: 184 VPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNRLKVP 243

BLAST of Lag0023134 vs. NCBI nr
Match: KAA0035620.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0038121.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0041646.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0047363.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0048378.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 292.4 bits (747), Expect = 4.0e-75
Identity = 152/273 (55.68%), Postives = 183/273 (67.03%), Query Frame = 0

Query: 7   HELVSVLSIMADSQRQLFNLINSFMNNQPRIESQTPY-LRHQIRQLACFRLIHESDLCCR 66
           HEL S+++    SQRQL  ++    N+  RI +  PY  RH+IRQLA FR+IH SDL CR
Sbjct: 4   HELASIVNAFIASQRQLLLMLELLKNDTKRI-THIPYETRHRIRQLAYFRMIHGSDLVCR 63

Query: 67  ESTRMDRRCFAILCSLLRMTFGLVGTEIVNVEEMVAMFLHIIAHDVKNRVIRRQFARSGE 126
           +STRMDRRCFAILC LLR   GL  TE+V+VEEMVAMFLHI+AHDVKNRVI+R+F RSGE
Sbjct: 64  QSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGE 123

Query: 127 TVSRHFNATLSVILRLYDVLLKKPEPITASCQDGRWKWFEIWILYVCTHRALDDTYVKVY 186
           T+SRHFN  L  ++RL++ LLKKP+P+   C D RW+WFE  +       ALD TY+KV 
Sbjct: 124 TISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFENCL------GALDGTYIKVN 183

Query: 187 VSAADRPRYRSRKGEIATNVLDVVS----------------------------------P 245
           V A+DR RYR+RKGE+ATNVL V                                    P
Sbjct: 184 VPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNRLKVP 243

BLAST of Lag0023134 vs. NCBI nr
Match: KAA0048361.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 290.4 bits (742), Expect = 1.5e-74
Identity = 152/273 (55.68%), Postives = 182/273 (66.67%), Query Frame = 0

Query: 7   HELVSVLSIMADSQRQLFNLINSFMNNQPRIESQTPY-LRHQIRQLACFRLIHESDLCCR 66
           HEL S+++    SQRQL  ++    N+  RI +  PY  RH+IRQLA FR+IH SDL CR
Sbjct: 4   HELASIVNAFIASQRQLLLMLELLKNDTKRI-THIPYETRHRIRQLAYFRMIHGSDLVCR 63

Query: 67  ESTRMDRRCFAILCSLLRMTFGLVGTEIVNVEEMVAMFLHIIAHDVKNRVIRRQFARSGE 126
           +STRMDRRCFAILC LLR   GL  TE+V+VEEMVAMFLHI+AHDVKNRVI+R+F RSGE
Sbjct: 64  QSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGE 123

Query: 127 TVSRHFNATLSVILRLYDVLLKKPEPITASCQDGRWKWFEIWILYVCTHRALDDTYVKVY 186
           T+SRHFN  L  ++RL++ LLKKP+P+   C D RWKWFE  +       ALD TY+KV 
Sbjct: 124 TISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWKWFENCL------GALDGTYIKVN 183

Query: 187 VSAADRPRYRSRKGEIATNVLDVVS----------------------------------P 245
           V A+DR RYR+RKGE+ATNVL V                                    P
Sbjct: 184 VPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGLAADSRILRDALSRPNRLKVP 243

BLAST of Lag0023134 vs. NCBI nr
Match: KAA0051057.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 288.9 bits (738), Expect = 4.5e-74
Identity = 150/273 (54.95%), Postives = 181/273 (66.30%), Query Frame = 0

Query: 7   HELVSVLSIMADSQRQLFNLINSFMNNQPRIESQTPY-LRHQIRQLACFRLIHESDLCCR 66
           HEL S+++    SQRQL  ++    N+  RI +  PY  RH+IRQLA FR+IH SDL C 
Sbjct: 4   HELASIVNAFIASQRQLLLMLELLKNDTKRI-THIPYETRHRIRQLAYFRMIHGSDLVCH 63

Query: 67  ESTRMDRRCFAILCSLLRMTFGLVGTEIVNVEEMVAMFLHIIAHDVKNRVIRRQFARSGE 126
           +STRMDRRCFAILC LLR   GL  TE+V+VEEMVAMFLHI+ HDVKNRVI+R+F RSGE
Sbjct: 64  QSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILVHDVKNRVIQREFMRSGE 123

Query: 127 TVSRHFNATLSVILRLYDVLLKKPEPITASCQDGRWKWFEIWILYVCTHRALDDTYVKVY 186
           T+SRHFN  L  ++RL++ LLKKP+P+   C D RW+WFE  +       ALD TY+KV 
Sbjct: 124 TISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFENCL------GALDGTYIKVN 183

Query: 187 VSAADRPRYRSRKGEIATNVLDVVS----------------------------------P 245
           V A+DR RYR+RKGE+ATNVL V                                    P
Sbjct: 184 VPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNRLKVP 243

BLAST of Lag0023134 vs. ExPASy TrEMBL
Match: A0A5A7SWD8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold515G00010 PE=3 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 5.1e-76
Identity = 154/282 (54.61%), Postives = 187/282 (66.31%), Query Frame = 0

Query: 7   HELVSVLSIMADSQRQLFNLINSFMNNQPRIESQTPY-LRHQIRQLACFRLIHESDLCCR 66
           HEL S+++    SQRQL  ++    N+  RI +  PY  RH+IRQLA FR+IH SDL CR
Sbjct: 4   HELASIVNAFIASQRQLLLMLELLKNDTKRI-THIPYETRHRIRQLAYFRMIHGSDLVCR 63

Query: 67  ESTRMDRRCFAILCSLLRMTFGLVGTEIVNVEEMVAMFLHIIAHDVKNRVIRRQFARSGE 126
           +STRMDRRCFAILC LLR   GL  TE+V+VEEMVAMFLHI+AHDVKNRVI+R+F RSGE
Sbjct: 64  QSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGE 123

Query: 127 TVSRHFNATLSVILRLYDVLLKKPEPITASCQDGRWKWFEIWILYVCTHRALDDTYVKVY 186
           T+SRHFN  L  ++RL+D LLKKP+P+   C D RW+WFE  +       ALD TY+KV 
Sbjct: 124 TISRHFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFENCL------GALDGTYIKVN 183

Query: 187 VSAADRPRYRSRKGEIATNVLDVVS----------------------------------P 246
           V A+DR RYR+RKGE+ATNVL V                                    P
Sbjct: 184 VPASDRARYRTRKGEVATNVLGVYDTKGDFVYVLTGWEGSAADSRILRDALSRPNRLKVP 243

Query: 247 KGYYYLCDAGYPNADGFLAPYKGERYHLTEWRGGRKSTYYTK 254
           KGYYYL DAGYPNA+GFLAPY+G+RYHL EWRG + +   +K
Sbjct: 244 KGYYYLVDAGYPNAEGFLAPYRGQRYHLQEWRGPKNAPSTSK 278

BLAST of Lag0023134 vs. ExPASy TrEMBL
Match: A0A5A7TXW1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00370 PE=3 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 6.7e-76
Identity = 153/273 (56.04%), Postives = 183/273 (67.03%), Query Frame = 0

Query: 7   HELVSVLSIMADSQRQLFNLINSFMNNQPRIESQTPY-LRHQIRQLACFRLIHESDLCCR 66
           HEL S+++    SQRQL  ++    N+  RI +  PY  RH+IRQLA FR+IH SDL CR
Sbjct: 4   HELASIVNAFIASQRQLLLMLELLKNDTKRI-THIPYETRHRIRQLAYFRMIHGSDLVCR 63

Query: 67  ESTRMDRRCFAILCSLLRMTFGLVGTEIVNVEEMVAMFLHIIAHDVKNRVIRRQFARSGE 126
           +STRMDRRCFAILC LLR   GL  TE+V+VEEMVAMFLHI+AHDVKNRVI+R+F RSGE
Sbjct: 64  QSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGE 123

Query: 127 TVSRHFNATLSVILRLYDVLLKKPEPITASCQDGRWKWFEIWILYVCTHRALDDTYVKVY 186
           T+SRHFN  L  ++RL+D LLKKP+P+   C D RW+WFE  +       ALD TY+KV 
Sbjct: 124 TISRHFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFENCL------GALDGTYIKVN 183

Query: 187 VSAADRPRYRSRKGEIATNVLDVVS----------------------------------P 245
           V A+DR RYR+RKGE+ATNVL V                                    P
Sbjct: 184 VPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNRLKVP 243

BLAST of Lag0023134 vs. ExPASy TrEMBL
Match: A0A5D3BDX0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1112G00360 PE=3 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 2.0e-75
Identity = 152/273 (55.68%), Postives = 183/273 (67.03%), Query Frame = 0

Query: 7   HELVSVLSIMADSQRQLFNLINSFMNNQPRIESQTPY-LRHQIRQLACFRLIHESDLCCR 66
           HEL S+++    SQRQL  ++    N+  RI +  PY  RH+IRQLA FR+IH SDL CR
Sbjct: 4   HELASIVNAFIASQRQLLLMLELLKNDTKRI-THIPYETRHRIRQLAYFRMIHGSDLVCR 63

Query: 67  ESTRMDRRCFAILCSLLRMTFGLVGTEIVNVEEMVAMFLHIIAHDVKNRVIRRQFARSGE 126
           +STRMDRRCFAILC LLR   GL  TE+V+VEEMVAMFLHI+AHDVKNRVI+R+F RSGE
Sbjct: 64  QSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGE 123

Query: 127 TVSRHFNATLSVILRLYDVLLKKPEPITASCQDGRWKWFEIWILYVCTHRALDDTYVKVY 186
           T+SRHFN  L  ++RL++ LLKKP+P+   C D RW+WFE  +       ALD TY+KV 
Sbjct: 124 TISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFENCL------GALDGTYIKVN 183

Query: 187 VSAADRPRYRSRKGEIATNVLDVVS----------------------------------P 245
           V A+DR RYR+RKGE+ATNVL V                                    P
Sbjct: 184 VPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNRLKVP 243

BLAST of Lag0023134 vs. ExPASy TrEMBL
Match: A0A5A7U476 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00800 PE=3 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 7.4e-75
Identity = 152/273 (55.68%), Postives = 182/273 (66.67%), Query Frame = 0

Query: 7   HELVSVLSIMADSQRQLFNLINSFMNNQPRIESQTPY-LRHQIRQLACFRLIHESDLCCR 66
           HEL S+++    SQRQL  ++    N+  RI +  PY  RH+IRQLA FR+IH SDL CR
Sbjct: 4   HELASIVNAFIASQRQLLLMLELLKNDTKRI-THIPYETRHRIRQLAYFRMIHGSDLVCR 63

Query: 67  ESTRMDRRCFAILCSLLRMTFGLVGTEIVNVEEMVAMFLHIIAHDVKNRVIRRQFARSGE 126
           +STRMDRRCFAILC LLR   GL  TE+V+VEEMVAMFLHI+AHDVKNRVI+R+F RSGE
Sbjct: 64  QSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGE 123

Query: 127 TVSRHFNATLSVILRLYDVLLKKPEPITASCQDGRWKWFEIWILYVCTHRALDDTYVKVY 186
           T+SRHFN  L  ++RL++ LLKKP+P+   C D RWKWFE  +       ALD TY+KV 
Sbjct: 124 TISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWKWFENCL------GALDGTYIKVN 183

Query: 187 VSAADRPRYRSRKGEIATNVLDVVS----------------------------------P 245
           V A+DR RYR+RKGE+ATNVL V                                    P
Sbjct: 184 VPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGLAADSRILRDALSRPNRLKVP 243

BLAST of Lag0023134 vs. ExPASy TrEMBL
Match: A0A5A7U9H2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold678G00110 PE=3 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 2.2e-74
Identity = 150/273 (54.95%), Postives = 181/273 (66.30%), Query Frame = 0

Query: 7   HELVSVLSIMADSQRQLFNLINSFMNNQPRIESQTPY-LRHQIRQLACFRLIHESDLCCR 66
           HEL S+++    SQRQL  ++    N+  RI +  PY  RH+IRQLA FR+IH SDL C 
Sbjct: 4   HELASIVNAFIASQRQLLLMLELLKNDTKRI-THIPYETRHRIRQLAYFRMIHGSDLVCH 63

Query: 67  ESTRMDRRCFAILCSLLRMTFGLVGTEIVNVEEMVAMFLHIIAHDVKNRVIRRQFARSGE 126
           +STRMDRRCFAILC LLR   GL  TE+V+VEEMVAMFLHI+ HDVKNRVI+R+F RSGE
Sbjct: 64  QSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILVHDVKNRVIQREFMRSGE 123

Query: 127 TVSRHFNATLSVILRLYDVLLKKPEPITASCQDGRWKWFEIWILYVCTHRALDDTYVKVY 186
           T+SRHFN  L  ++RL++ LLKKP+P+   C D RW+WFE  +       ALD TY+KV 
Sbjct: 124 TISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFENCL------GALDGTYIKVN 183

Query: 187 VSAADRPRYRSRKGEIATNVLDVVS----------------------------------P 245
           V A+DR RYR+RKGE+ATNVL V                                    P
Sbjct: 184 VPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNRLKVP 243

BLAST of Lag0023134 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 85.5 bits (210), Expect = 7.0e-17
Identity = 66/246 (26.83%), Postives = 103/246 (41.87%), Query Frame = 0

Query: 54  FRLIHESDLCCRESTRMDRRCFAILCSLLRMTFGLVGTEIVNVEEMVAMFLHIIAHDVKN 113
           +++++  +  C E+ RMD+  F  LC LL+    L  T  + +E  +A+FL II H+++ 
Sbjct: 32  YQILNGPNEQCFENFRMDKPVFYKLCDLLQTRGLLRHTNRIKIEAQLAIFLFIIGHNLRT 91

Query: 114 RVIRRQFARSGETVSRHFNATLSVILRL-YDVLLKKPEPITASCQDGRWKWFEIWILYVC 173
           R ++  F  SGET+SRHFN  L+ ++ +  D         T    D  +K         C
Sbjct: 92  RAVQELFCYSGETISRHFNNVLNAVIAISKDFFQPNSNSDTLENDDPYFK--------DC 151

Query: 174 THRALDDTYVKVYVSAADRPRYRSRKGEIATNVLDVVS---------------------- 233
               +D  ++ V V   ++  +R+  G +  NVL   S                      
Sbjct: 152 V-GVVDSFHIPVMVGVDEQGPFRNGNGLLTQNVLAASSFDLRFNYVLAGWEGSASDQQVL 211

Query: 234 ------------PKGYYYLCDAGYPNADGFLAPYKGERYHLTEWRGGRKSTYYTKRVLQH 265
                       P+G YY+ D  YPN  GF+APY G     T  R   K  +  +  L H
Sbjct: 212 NAALTRRNKLQVPQGKYYIVDNKYPNLPGFIAPYHGVS---TNSREEAKEMFNERHKLLH 265

BLAST of Lag0023134 vs. TAIR 10
Match: AT1G43722.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28730.1); Has 924 Blast hits to 912 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 222; Fungi - 31; Plants - 661; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 82.4 bits (202), Expect = 5.9e-16
Identity = 66/257 (25.68%), Postives = 104/257 (40.47%), Query Frame = 0

Query: 54  FRLIHESDLCCRESTRMDRRCFAILCSLLRMTFGLVGTEIVNVEEMVAMFLHIIAHDVKN 113
           +R + +    C +  RM   CF  LC++L+  + L  T  +++EE VAMFL I  H+   
Sbjct: 56  WRRLQQDAAACLQLLRMSLPCFTTLCNMLQTNYDLQPTLNISIEESVAMFLRICGHNEVY 115

Query: 114 RVIRRQFARSGETVSRHFNATLSVILRLYDVLLKKPE-------PITASCQDGRWKWFEI 173
           R +  +F R+ ETV R F   L+    L    ++ P        P         W +F  
Sbjct: 116 RDVGLRFGRNQETVQRKFREVLTATELLACDYIRTPTRQELYRIPERLQVDQRYWPYFSG 175

Query: 174 WILYVCTHRALDDTYVKVYVSAADRPRYRSRKGEIATNVLDV------------------ 233
           ++       A+D T+V V V    +  Y +R    + N++ +                  
Sbjct: 176 FV------GAMDGTHVCVKVKPDLQGMYWNRHDNASLNIMAICDLKMLFTYIWNGAPGSC 235

Query: 234 -----------------VSPKGYYYLCDAGYPNADGFLAPYKGE-----RYHLTEWRGGR 263
                            + P   YYL D+GYPN  G LAPY+       RYH++++    
Sbjct: 236 YDTAVLQIAQQSDSEFPLPPSEKYYLVDSGYPNKQGLLAPYRSSRNRVVRYHMSQF---- 295

BLAST of Lag0023134 vs. TAIR 10
Match: AT5G28730.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 496 Blast hits to 496 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 23; Plants - 470; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 73.6 bits (179), Expect = 2.7e-13
Identity = 57/191 (29.84%), Postives = 90/191 (47.12%), Query Frame = 0

Query: 57  IHESDLCCRESTRMDRRCFAILCSLLRMTFGLVGTEIVNVEEMVAMFLHIIAHDVKNRVI 116
           I+ +++ C+   RM    F  LC +L   +GL  +  ++++E VA+FL I A +   R I
Sbjct: 17  IYSNEVSCQTLIRMSSEAFTQLCEILHGKYGLQSSTNISLDESVAIFLIICASNDTQRDI 76

Query: 117 RRQFARSGETVSRHFNATLSVILRLYDVLL--KKPEPITA---SCQDGRWKW-FEIWILY 176
             +F  + ET+ R F+  L  + RL    +  +K E + A     QD    W F + +L 
Sbjct: 77  ALRFGHAQETIWRKFHDVLKAMERLAVEYIRPRKVEELRAISNRLQDDTRYWPFLMDLLG 136

Query: 177 VCTHRA-----LDDTYVKVYVSAADRPR-YRSRKGEIATNVLDVVSPKGYYYLCDAGYPN 236
           + +        LD  +   +V  A      R     I+ + L  V P   YYL D+GY N
Sbjct: 137 IASFNVLAICDLDMLFTYCFVGMAGSTHDARVLSAAISDDPLFHVPPDSKYYLVDSGYAN 196

BLAST of Lag0023134 vs. TAIR 10
Match: AT5G35695.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 42.0 bits (97), Expect = 8.9e-04
Identity = 17/33 (51.52%), Postives = 23/33 (69.70%), Query Frame = 0

Query: 215 YYLCDAGYPNADGFLAPYKGERYHLTEWRGGRK 248
           +YL D G+ N   FLAP++G RYHL E+ G R+
Sbjct: 49  FYLVDCGFANRLNFLAPFRGVRYHLQEFAGQRR 81

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0034843.11.1e-7554.61retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0046727.11.4e-7556.04retrotransposon protein [Cucumis melo var. makuwa] >KAA0052100.1 retrotransposon... [more]
KAA0035620.14.0e-7555.68retrotransposon protein [Cucumis melo var. makuwa] >KAA0038121.1 retrotransposon... [more]
KAA0048361.11.5e-7455.68retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0051057.14.5e-7454.95retrotransposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7SWD85.1e-7654.61Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7TXW16.7e-7656.04Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BDX02.0e-7555.68Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U4767.4e-7555.68Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7U9H22.2e-7454.95Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
AT5G41980.17.0e-1726.83CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int... [more]
AT1G43722.15.9e-1625.68unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT5G28730.12.7e-1329.84unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT5G35695.18.9e-0451.52CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR22930:SF216OS11G0577650 PROTEINcoord: 22..210
NoneNo IPR availablePANTHERPTHR22930UNCHARACTERIZEDcoord: 22..210

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0023134.1Lag0023134.1mRNA