Lag0023134 (gene) Sponge gourd (AG‐4) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGATTCCATAACCCCACATGAACTTGTGTCCGTACTTTCAATAATGGCTGACTCTCAGCGCCAACTATTCAACCTGATTAACTCTTTCATGAACAACCAGCCTAGGATAGAAAGCCAAACTCCATACCTCAGACACCAGATAAGACAGTTAGCCTGCTTCCGGTTGATTCATGAAAGTGACCTATGCTGTCGAGAAAGCACCAGGATGGATAGGAGATGCTTTGCCATTCTATGTAGTCTGTTGAGAATGACGTTCGGGTTGGTAGGAACGGAAATCGTAAACGTGGAAGAGATGGTCGCGATGTTCTTGCACATCATTGCTCATGATGTTAAGAATCGAGTCATTAGAAGACAGTTTGCACGGTCGGGCGAAACCGTTTCTCGACACTTCAACGCGACTTTGAGTGTCATACTACGATTGTACGACGTTCTACTTAAGAAACCTGAACCGATCACGGCTTCTTGCCAAGATGGGAGGTGGAAATGGTTTGAGATATGGATACTATACGTTTGTACACATCGTTAAGATTTTACAACGTTCTTTTGACATTTGTAATGCAATGTGGAAACAAAATTGTTTAGGTGCATTGGACGATACATACGTAAAGGTCTATGTGAGTGCAGCTGATCGACCAAGGTATAGGTCACGGAAGGGTGAGATTGCAACAAATGTGTTGGACGTTGTGTCGCCAAAAGGTGAATTCATTTTTGTTATGCCGAGATAGGAAGGTTCGGCTGCTGATTCTCGTGTACTCAGAGATGCTATATCACGCCCCAATGGAATAATAGTGCCGAAGGGTATGGAACGAAGTATGAATGTAAAATAGGATCGCTTACGTAATCCTTAGGTATTAACCATTTTTTATGAACAGGTTACTACTACCTCTGTGATGCTGGGTACCCAAACGCAGATGGTTTCTTGGCACCTTACAAAGGAGAGCGGTACCACTTAACCGAGTGGCGTGGGGGGAGGAAATCCACCTACTACACCAAGAGAGTTCTTCAACATGAAGCATTCTCCTGCACATAA ATGGATTCCATAACCCCACATGAACTTGTGTCCGTACTTTCAATAATGGCTGACTCTCAGCGCCAACTATTCAACCTGATTAACTCTTTCATGAACAACCAGCCTAGGATAGAAAGCCAAACTCCATACCTCAGACACCAGATAAGACAGTTAGCCTGCTTCCGGTTGATTCATGAAAGTGACCTATGCTGTCGAGAAAGCACCAGGATGGATAGGAGATGCTTTGCCATTCTATGTAGTCTGTTGAGAATGACGTTCGGGTTGGTAGGAACGGAAATCGTAAACGTGGAAGAGATGGTCGCGATGTTCTTGCACATCATTGCTCATGATGTTAAGAATCGAGTCATTAGAAGACAGTTTGCACGGTCGGGCGAAACCGTTTCTCGACACTTCAACGCGACTTTGAGTGTCATACTACGATTGTACGACGTTCTACTTAAGAAACCTGAACCGATCACGGCTTCTTGCCAAGATGGGAGGTGGAAATGGTTTGAGATATGGATACTATACGTTTGTACACATCGTGCATTGGACGATACATACGTAAAGGTCTATGTGAGTGCAGCTGATCGACCAAGGTATAGGTCACGGAAGGGTGAGATTGCAACAAATGTGTTGGACGTTGTGTCGCCAAAAGGTTACTACTACCTCTGTGATGCTGGGTACCCAAACGCAGATGGTTTCTTGGCACCTTACAAAGGAGAGCGGTACCACTTAACCGAGTGGCGTGGGGGGAGGAAATCCACCTACTACACCAAGAGAGTTCTTCAACATGAAGCATTCTCCTGCACATAA ATGGATTCCATAACCCCACATGAACTTGTGTCCGTACTTTCAATAATGGCTGACTCTCAGCGCCAACTATTCAACCTGATTAACTCTTTCATGAACAACCAGCCTAGGATAGAAAGCCAAACTCCATACCTCAGACACCAGATAAGACAGTTAGCCTGCTTCCGGTTGATTCATGAAAGTGACCTATGCTGTCGAGAAAGCACCAGGATGGATAGGAGATGCTTTGCCATTCTATGTAGTCTGTTGAGAATGACGTTCGGGTTGGTAGGAACGGAAATCGTAAACGTGGAAGAGATGGTCGCGATGTTCTTGCACATCATTGCTCATGATGTTAAGAATCGAGTCATTAGAAGACAGTTTGCACGGTCGGGCGAAACCGTTTCTCGACACTTCAACGCGACTTTGAGTGTCATACTACGATTGTACGACGTTCTACTTAAGAAACCTGAACCGATCACGGCTTCTTGCCAAGATGGGAGGTGGAAATGGTTTGAGATATGGATACTATACGTTTGTACACATCGTGCATTGGACGATACATACGTAAAGGTCTATGTGAGTGCAGCTGATCGACCAAGGTATAGGTCACGGAAGGGTGAGATTGCAACAAATGTGTTGGACGTTGTGTCGCCAAAAGGTTACTACTACCTCTGTGATGCTGGGTACCCAAACGCAGATGGTTTCTTGGCACCTTACAAAGGAGAGCGGTACCACTTAACCGAGTGGCGTGGGGGGAGGAAATCCACCTACTACACCAAGAGAGTTCTTCAACATGAAGCATTCTCCTGCACATAA MDSITPHELVSVLSIMADSQRQLFNLINSFMNNQPRIESQTPYLRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSLLRMTFGLVGTEIVNVEEMVAMFLHIIAHDVKNRVIRRQFARSGETVSRHFNATLSVILRLYDVLLKKPEPITASCQDGRWKWFEIWILYVCTHRALDDTYVKVYVSAADRPRYRSRKGEIATNVLDVVSPKGYYYLCDAGYPNADGFLAPYKGERYHLTEWRGGRKSTYYTKRVLQHEAFSCT Homology
BLAST of Lag0023134 vs. NCBI nr
Match: KAA0034843.1 (retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 294.3 bits (752), Expect = 1.1e-75 Identity = 154/282 (54.61%), Postives = 187/282 (66.31%), Query Frame = 0
BLAST of Lag0023134 vs. NCBI nr
Match: KAA0046727.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0052100.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0056032.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0059561.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0065497.1 retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 293.9 bits (751), Expect = 1.4e-75 Identity = 153/273 (56.04%), Postives = 183/273 (67.03%), Query Frame = 0
BLAST of Lag0023134 vs. NCBI nr
Match: KAA0035620.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0038121.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0041646.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0047363.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0048378.1 retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 292.4 bits (747), Expect = 4.0e-75 Identity = 152/273 (55.68%), Postives = 183/273 (67.03%), Query Frame = 0
BLAST of Lag0023134 vs. NCBI nr
Match: KAA0048361.1 (retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 290.4 bits (742), Expect = 1.5e-74 Identity = 152/273 (55.68%), Postives = 182/273 (66.67%), Query Frame = 0
BLAST of Lag0023134 vs. NCBI nr
Match: KAA0051057.1 (retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 288.9 bits (738), Expect = 4.5e-74 Identity = 150/273 (54.95%), Postives = 181/273 (66.30%), Query Frame = 0
BLAST of Lag0023134 vs. ExPASy TrEMBL
Match: A0A5A7SWD8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold515G00010 PE=3 SV=1) HSP 1 Score: 294.3 bits (752), Expect = 5.1e-76 Identity = 154/282 (54.61%), Postives = 187/282 (66.31%), Query Frame = 0
BLAST of Lag0023134 vs. ExPASy TrEMBL
Match: A0A5A7TXW1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00370 PE=3 SV=1) HSP 1 Score: 293.9 bits (751), Expect = 6.7e-76 Identity = 153/273 (56.04%), Postives = 183/273 (67.03%), Query Frame = 0
BLAST of Lag0023134 vs. ExPASy TrEMBL
Match: A0A5D3BDX0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1112G00360 PE=3 SV=1) HSP 1 Score: 292.4 bits (747), Expect = 2.0e-75 Identity = 152/273 (55.68%), Postives = 183/273 (67.03%), Query Frame = 0
BLAST of Lag0023134 vs. ExPASy TrEMBL
Match: A0A5A7U476 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00800 PE=3 SV=1) HSP 1 Score: 290.4 bits (742), Expect = 7.4e-75 Identity = 152/273 (55.68%), Postives = 182/273 (66.67%), Query Frame = 0
BLAST of Lag0023134 vs. ExPASy TrEMBL
Match: A0A5A7U9H2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold678G00110 PE=3 SV=1) HSP 1 Score: 288.9 bits (738), Expect = 2.2e-74 Identity = 150/273 (54.95%), Postives = 181/273 (66.30%), Query Frame = 0
BLAST of Lag0023134 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 85.5 bits (210), Expect = 7.0e-17 Identity = 66/246 (26.83%), Postives = 103/246 (41.87%), Query Frame = 0
BLAST of Lag0023134 vs. TAIR 10
Match: AT1G43722.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28730.1); Has 924 Blast hits to 912 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 222; Fungi - 31; Plants - 661; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). ) HSP 1 Score: 82.4 bits (202), Expect = 5.9e-16 Identity = 66/257 (25.68%), Postives = 104/257 (40.47%), Query Frame = 0
BLAST of Lag0023134 vs. TAIR 10
Match: AT5G28730.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 496 Blast hits to 496 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 23; Plants - 470; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 73.6 bits (179), Expect = 2.7e-13 Identity = 57/191 (29.84%), Postives = 90/191 (47.12%), Query Frame = 0
BLAST of Lag0023134 vs. TAIR 10
Match: AT5G35695.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 42.0 bits (97), Expect = 8.9e-04 Identity = 17/33 (51.52%), Postives = 23/33 (69.70%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
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