Lag0023126 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0023126
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr7: 44583166 .. 44583680 (-)
RNA-Seq ExpressionLag0023126
SyntenyLag0023126
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGTGGTTTACATCTTTACTTTCAGCCATTTTTAAAACCGCTGTTATTGGGCCTTCCAACGGCGCTCTTCACAGAGGTCGCGTAAAACCGCTTCTATAATAGGGTTAAAATCCCAATCCAAACGTGACAGAAAAGAAAAAGGGTTAAAAAATTAAAAAGTGGGAAACTGCAAATAATGCATTAAAATACTATGTAGTATAATTCTACTCCCTTGCTCTATAAATTACAACTTCCCTTCACAATCACAAAGCGCTTCATTTCTTCTTCTTCTGATAATCAATTAGATTTCACTGTTTGTGTGAGAATTGAAGTTGGAGAGAATGGCAGATGAAGTCCCACGCCGTCAATATCCAAACAACAACCCACCAGTTAGGGGTCAGATCAAGGCTAAAATCGCTGAGGAGTTGGCCACCTCAGCAGCCTCTGTAGTATCCTATGTCGCCGCCGCAGTCGCCGGATTCATCCCAGATCGTACGCCGCGGGAACCTTCTCCGCCGCCCGCCGGTACCTAG

mRNA sequence

ATGGGGTGGTTTACATCTTTACTTTCAGCCATTTTTAAAACCGCTGTTATTGGGCCTTCCAACGGCGCTCTTCACAGAGGTCGCTTGGAGAGAATGGCAGATGAAGTCCCACGCCGTCAATATCCAAACAACAACCCACCAGTTAGGGGTCAGATCAAGGCTAAAATCGCTGAGGAGTTGGCCACCTCAGCAGCCTCTGTAGTATCCTATGTCGCCGCCGCAGTCGCCGGATTCATCCCAGATCGTACGCCGCGGGAACCTTCTCCGCCGCCCGCCGGTACCTAG

Coding sequence (CDS)

ATGGGGTGGTTTACATCTTTACTTTCAGCCATTTTTAAAACCGCTGTTATTGGGCCTTCCAACGGCGCTCTTCACAGAGGTCGCTTGGAGAGAATGGCAGATGAAGTCCCACGCCGTCAATATCCAAACAACAACCCACCAGTTAGGGGTCAGATCAAGGCTAAAATCGCTGAGGAGTTGGCCACCTCAGCAGCCTCTGTAGTATCCTATGTCGCCGCCGCAGTCGCCGGATTCATCCCAGATCGTACGCCGCGGGAACCTTCTCCGCCGCCCGCCGGTACCTAG

Protein sequence

MGWFTSLLSAIFKTAVIGPSNGALHRGRLERMADEVPRRQYPNNNPPVRGQIKAKIAEELATSAASVVSYVAAAVAGFIPDRTPREPSPPPAGT
Homology
[Close]
BLAST of Lag0023126 vs. NCBI nr
Match: TYK02876.1 (hypothetical protein E5676_scaffold968G00050 [Cucumis melo var. makuwa])

HSP 1 Score: 62.4 bits (150), Expect = 2.4e-06
Identity = 33/50 (66.00%), Postives = 37/50 (74.00%), Query Frame = 0 

Query: 44 NNPPVRGQIKAKIAEELATSAASVVSYVAAAVAGFIPDRTPREPSPPPAG 94
          NNPP RG+IKAKI E+LATSAA+  SYV AA+AG IPDR P    PP  G
Sbjct: 7  NNPPKRGKIKAKIGEDLATSAATAASYVVAALAGLIPDRPPPNHGPPCQG 56

[Close]
BLAST of Lag0023126 vs. NCBI nr
Match: KGN65654.1 (hypothetical protein Csa_019816 [Cucumis sativus])

HSP 1 Score: 59.7 bits (143), Expect = 1.6e-05
Identity = 34/54 (62.96%), Postives = 38/54 (70.37%), Query Frame = 0 

Query: 44 NNPPVRGQIKAKIAEELATSAASVVSYVAAAVAGFIPDRTP----REPSPPPAG 94
          NNPP RG+I AKI E+LATSAA+  SYV AA+AG IPD  P      P PPPAG
Sbjct: 7  NNPPRRGRIMAKIGEDLATSAATAASYVVAALAGLIPDPPPPVHAPPPPPPPAG 60

The following BLAST results are available for this feature:
BLAST of Lag0023126 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK02876.12.4e-0666.00hypothetical protein E5676_scaffold968G00050 [Cucumis melo var. makuwa][more]
KGN65654.11.6e-0562.96hypothetical protein Csa_019816 [Cucumis sativus][more]
BLAST of Lag0023126 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0023126.1Lag0023126.1mRNA