Lag0023102 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0023102
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Locationchr7: 44235765 .. 44239776 (+)
RNA-Seq ExpressionLag0023102
SyntenyLag0023102
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGAGCAGAGAATCGAGGCGATTAATAAGCTCGGACTGAACAGTAAGCTTATCAGCAGTCCGAACACAGTAGAACAAACCCTTCCATTGCTTATTCATATCCCCATTGGAGAGGTTCGTTTGAGTTGGAAGCCATGTCTTGATGATTACACGGAGGGTTTTGTCTCAAGTCGCCTTGTTGGAGGACGCCAAAAGCTTGATCGGTGAAGTGAAATCTTGATGGGAAATTGTCAAAATTTACCCTTTTAAGTTTTGGGTTTTCAAAATTGACCCACTTCCTAAAAACTTGTTTTTTTAACCCATTTTATACACATTTGGATACTTTTTGGTGGGACCCACTAGGTAAAAAGTCTTTATTACCCTTCTTCAATTTTGATGAATGATGGTCATTAAATTGTCAACTAGCCTCTCAACCAACTAATTCCAACAATTAAAACAAAATTCAAACATGAAAACATCATTTACCACCGACAAAATACTATAGAGAAAAGAAAGAAGTCAAACACGTGAAGCCAAAATCCGGGTATTGTCAACGTTTTTTTAAAGAAGGTATGTAGATTACATGTTTTAAATCATAAGTAGGTTTTTTAAGAGTTTTATTCGAAAATCTGGAATTTTTTTTTTTTTTGAATTTTGACTGGGAAATGATGAATCCCGACCGGGATTTCTTGGTCAAACGACCGGGATTTCTTGGTCGGGAAATCAACCAGGAAATTTTCCAGATTTTGTTTTTTCCTTTCTTCCTTTGATTTTTCTTTCCTTCTTTTACAAAAGTTGTTTTTTTCTAATGAATCTTGTATATATATATATGTATATTTTGCATAATGCCTCAAATTTGTGTGTTACGGTGGTGTATGGAAGGAGAATGAAAGAGATTAGGAAGGTGGATCACATTTGTATAGGACAAACAAAATAATTTGAAAGAACAAGCTAAAAAATAGTCAGCTGTTTTTTTCCCTTTTCTTCACTTCTTCCTCTATCCCTTCACTTCTTTACTTATTATAAAGAAAATTCATATGGATGCTCATCCCTTTACTTATTTACTTATTTACTTGTCAAGAAATTACGAGAGAGGAGGCTCGAAGCAATGTATACGATGAGTGAACTGATGTGTAATGAACTAATATTATTTGTACTTTTATAATTTTTCCCATTTTGATCAAAGCAATCTTTTCTCTTGACTTTTCTTTTCTTTGTTGTTATTATTATAATTATTATTCTCTTTTCGTTATTGTGCAAGAGAGTTTAAGATTAGTGATCTTCAAACTCTTTTATTAGAAAAAATGATGTGAGGAGAATAATATCAATCTTTTTTAGTAAAGTTAAAGAATAATATCATTCTATATCTTAGAAAGAAGTAGTATTACATTTCATTAATAAAAGTAACTCATTCCGAACCTTTAGAGGGTTAAATAATATCGAAAGCATACATTGTTCTCAAATTTTGTAAACATTTTGGAAGTTTTAATTTTGCTTTTAAAGTTTAGAAAACCTTCCATCAAATTTATAGTCTAAACACTTGAAATTGAATAACGAAATGATAATGTCACATTTAAAGTATATCTTGATAATAATACCTTACTCAATAATTTTTTTTTTGTTTAATTTAATGAGACATAAATTATAAAGTGCCCTATGTGATAATACTATATTGAATGAATGTTTAATTCAAGATCAAATTTTTAGATAAGACAATAGCAAGGTGAGCATTTAAAACCTAAAAGCATCCTTATTACTATAAGGTAACAGAAAGGAAGACAGACAGACAGAAAAAAAAAAAAAAAAAGTACTGTTTTTTTTCCGGGTCGCCTCCCGGTCGAGAATTCGACCCGGAAAAAACCGGTTTTCCCTTGCGGGAAAACTAGTTTTTCCGGGTTTCGATCCCGACCGAGAAGTGACCGGGAAGTTTCGTCTTCTCCGGCACCGATCGTTCCTTCTACTCCGAAAACCCCTCCATAAAACCCGCAAACTCCGTAAGACCCACAAACTACTCCAACAAAACTCATTCATCTCCAAACTCCATAAAACCCACAGATGGGTATTCGCCGGAATAAAACCCACACAAAAAATGTACCTTAAGATGCTTTCGTAGGTGAAGACGCCGGAGAAGAAGGGAGAAGAAGACGCTTGAAGACGCTTGAAGAAGTCGCTGGAAAAGAAGCCGTCGGAGAAGAAGGGAGAAGAAGACGCTTGAAGAAGTCGCCGGAACCGGAGCCGTCGCCGGAAAAGAAAGACGAACGGAGAAGAAGACGCCGGACGGAGAAGAAGGTTGTTCGAATAGAATGGAGGAGAGGAAAGGGTTTTACTGAATGGGGGTTTGTTTTTTTGACCTTTCACATTAAGGGCAATACTGTAATTGTTCATCCATGGATTTTATCAACCAGGTTAAAAAAACATGTTTTTAAAAATGAGGTTATTTTTGAAAGCCAAAAACTTAAAGGGGTTAAAACTGACAATTCCCCAATCTTGATCTCCTTCAACCATCTCCTCCATTTTTTACACCGAAAAGCTCAGTAGTTTGCTTTCAGATTTAGAAACTAGGAAGAAATCAAAAGAAAAACATTGAATTAGATAGAAAGACGAGATGGGTGTGAGGAAAAAGGATTGAATTCGATGAAATTGGAATTTCCCAATTCCCAGAAGGTTGAACGACATAGATGAGTGAGTCATTTAGAGAGAGAGGGATGAAAAAGCTTGTGCAAGTTCTGAGAGTCGCATAACTTTTGGGAAATTGTCAAATTTAACCCAAATGAGTTTTGGGTTTTCAAAATTGACCCACCCCCTAAAAATTTGTTTTTTTTAACCTGCTGATGTCACTTCACCATGTACAATTACAAACACACCCTTGAAGCTAAAAAAAAAAAAAAAAAAAACGTCTTGTATCCCTTCGTTTCTCTCTCTTGCTCTCTGTTTCGTTTCTTCCCTCCTGTAATCTCCAACTATGCGTGGATTGGGTAGCATTTTTCGGTTGGTAAATTTTGTTCCAACCGTTTATGTGTTGTTTTCGAAGACGAGATGGGGTTTTGGAGTTTAAGTTTAAGAGAGGGAAAGGGGTTTTGAGAAAGGAAGGTATTTTTGGGGTGAGGAGTGGTTTCCTATGGCGTTTGATTGAAAAAAAATGAAAAAAAAACTCTCTAGTTGCCGACGTCGGAGAAGACAATTATTCTCGGTTGATTTCCCGGTCAAGATCGTGACCGGGAAATTTGTGGTTTTCTCGTGAAAGAAGAAGGAAAAAAGGATCTGGAAAATTTCTTGGTCGGGATTCATAATTTCCCGGTCGGGATTCATAATTTTCCGGCCGGGATTCATATATTTTCCAGATTTTCAAAAAAAAATTATTGTTTAGTTGAGATTTTTGTGGGTCAAATTGAGTGGTTATGGTTATGTTAGGTCTACCTTTGCACTTTTGTTTCCTTCAGTTCCTTATTTAAATCATTATATTCATTTTTTCCCTTGTTGGATAATAGTACGGTTGAGATTTTTGTGGGTTTGTTTTGACGTTTGAAATTAGATAGTTGGGTTAGTTTGTTGAGATTTTTTTTTAATATGGTTGGTTGAGAAATTTAAAATTGAAGAAGGGTAAGGATGGCTTTTCACCTTGTGGGTCCCATAAAAAAATAGCAACTTTATATAAAATAGGTTAAAAAAAAACAAATTTTTAGAGAGTAGGTCAATTTTGAAAACCCAAAACTCATTTGGGTTAAATTTGACAATTTCCCATAACTTTTCATAGTATTTGAGCGGGCAACGAAATTTTTTTAGCGCTTTTCTTTTCCGCTTTTTTTCATCCTTTTTTCATAGCTAATTTTATAAAAAGCTATCTTGAAAAGCTATAAAAAGGGATATTTGTTGTAGTGTTGTTTGCCAGATTTGCAATAAACCTGGCCATGGAGCACTCGACTATTACAACCGGATGAATTTTTCCTTTCAAGGATGTCATCCTCCGTCTCAACTTGCTGCTATGACCGCTGCTGTTGATCTTGCTATGTGTAACGACCCGACTTCTTAA

mRNA sequence

ATGGAGGAGCAGAGAATCGAGGCGATTAATAAGCTCGGACTGAACAGTAAGCTTATCAGCAGTCCGAACACAGTAGAACAAACCCTTCCATTGCTTATTCATATCCCCATTGGAGAGGTTCGTTTGAGTTGGAAGCCATGTCTTGATGATTACACGGAGGGTTTTGTCTCAAGTCGCCTTGTTGGAGGACGCCAAAAGCTTGATCGAATTCGACCCGGAAAAAACCGGTTTTCCCTTGCGGGAAAACTAGTTTTTCCGGGTTTCGATCCCGACCGAGAAGTGACCGGGAAGTTTCGTCTTCTCCGGCACCGATCGTTCCTTCTACTCCGAAAACCCCTCCATAAAACCCGCAAACTCCGTGAAGACGCCGGAGAAGAAGGGAGAAGAAGACGCTTGAAGACGCTTGAAGAAGTCGCTGGAAAAGAAGCCGTCGGAGAAGAAGGGAGAAGAAGACGCTTGAAGAAGTCGCCGGAACCGGAGCCGTCGCCGGAAAAGAAAGACGAACGGAGAAGAAGACGCCGGACGGAGAAGAAGATTTGCAATAAACCTGGCCATGGAGCACTCGACTATTACAACCGGATGAATTTTTCCTTTCAAGGATGTCATCCTCCGTCTCAACTTGCTGCTATGACCGCTGCTGTTGATCTTGCTATGTGTAACGACCCGACTTCTTAA

Coding sequence (CDS)

ATGGAGGAGCAGAGAATCGAGGCGATTAATAAGCTCGGACTGAACAGTAAGCTTATCAGCAGTCCGAACACAGTAGAACAAACCCTTCCATTGCTTATTCATATCCCCATTGGAGAGGTTCGTTTGAGTTGGAAGCCATGTCTTGATGATTACACGGAGGGTTTTGTCTCAAGTCGCCTTGTTGGAGGACGCCAAAAGCTTGATCGAATTCGACCCGGAAAAAACCGGTTTTCCCTTGCGGGAAAACTAGTTTTTCCGGGTTTCGATCCCGACCGAGAAGTGACCGGGAAGTTTCGTCTTCTCCGGCACCGATCGTTCCTTCTACTCCGAAAACCCCTCCATAAAACCCGCAAACTCCGTGAAGACGCCGGAGAAGAAGGGAGAAGAAGACGCTTGAAGACGCTTGAAGAAGTCGCTGGAAAAGAAGCCGTCGGAGAAGAAGGGAGAAGAAGACGCTTGAAGAAGTCGCCGGAACCGGAGCCGTCGCCGGAAAAGAAAGACGAACGGAGAAGAAGACGCCGGACGGAGAAGAAGATTTGCAATAAACCTGGCCATGGAGCACTCGACTATTACAACCGGATGAATTTTTCCTTTCAAGGATGTCATCCTCCGTCTCAACTTGCTGCTATGACCGCTGCTGTTGATCTTGCTATGTGTAACGACCCGACTTCTTAA

Protein sequence

MEEQRIEAINKLGLNSKLISSPNTVEQTLPLLIHIPIGEVRLSWKPCLDDYTEGFVSSRLVGGRQKLDRIRPGKNRFSLAGKLVFPGFDPDREVTGKFRLLRHRSFLLLRKPLHKTRKLREDAGEEGRRRRLKTLEEVAGKEAVGEEGRRRRLKKSPEPEPSPEKKDERRRRRRTEKKICNKPGHGALDYYNRMNFSFQGCHPPSQLAAMTAAVDLAMCNDPTS
Homology
[Close]
BLAST of Lag0023102 vs. NCBI nr
Match: KAF8406331.1 (hypothetical protein HHK36_008417 [Tetracentron sinense])

HSP 1 Score: 57.8 bits (138), Expect = 1.4e-04
Identity = 25/36 (69.44%), Postives = 31/36 (86.11%), Query Frame = 0 

Query: 178 KICNKPGHGALDYYNRMNFSFQGCHPPSQLAAMTAA 214
           +IC+K GH A+D YNRMN +FQG HPP+QLAAMTA+
Sbjct: 492 QICDKSGHLAIDCYNRMNHAFQGRHPPAQLAAMTAS 527

[Close]
BLAST of Lag0023102 vs. NCBI nr
Match: CAN78270.1 (hypothetical protein VITISV_006712 [Vitis vinifera])

HSP 1 Score: 57.8 bits (138), Expect = 1.4e-04
Identity = 24/47 (51.06%), Postives = 32/47 (68.09%), Query Frame = 0 

Query: 174 RTEKKICNKPGHGALDYYNRMNFSFQGCHPPSQLAAMTAAVDLAMCN 221
           R+  +IC +  H ALDYYNRMN++FQG HPP++LAAM    +    N
Sbjct: 131 RSPSQICKRENHQALDYYNRMNYAFQGRHPPTELAAMVVEANTTYLN 177

[Close]
BLAST of Lag0023102 vs. NCBI nr
Match: XP_016902697.1 (PREDICTED: uncharacterized protein LOC107991825 [Cucumis melo])

HSP 1 Score: 57.4 bits (137), Expect = 1.9e-04
Identity = 25/33 (75.76%), Postives = 28/33 (84.85%), Query Frame = 0 

Query: 178 KICNKPGHGALDYYNRMNFSFQGCHPPSQLAAM 211
           +IC+K GH ALD YNRMNFS+QG HPPSQL AM
Sbjct: 244 QICHKQGHVALDCYNRMNFSYQGQHPPSQLVAM 276

[Close]
BLAST of Lag0023102 vs. NCBI nr
Match: KAA8538438.1 (hypothetical protein F0562_028016 [Nyssa sinensis])

HSP 1 Score: 57.4 bits (137), Expect = 1.9e-04
Identity = 29/54 (53.70%), Postives = 36/54 (66.67%), Query Frame = 0 

Query: 159 PEPSPEKKDERRRRRRTEKKICNKPGHGALDYYNRMNFSFQGCHPPSQLAAMTA 213
           P PSP        R R+  +IC + GH ALD +NRMN+SFQG HPP++LAAM A
Sbjct: 285 PSPSPAASAASPSRLRSPCQICKREGHQALDCFNRMNYSFQGRHPPTELAAMVA 338

[Close]
BLAST of Lag0023102 vs. NCBI nr
Match: KAA8540914.1 (hypothetical protein F0562_024948 [Nyssa sinensis])

HSP 1 Score: 57.0 bits (136), Expect = 2.4e-04
Identity = 29/54 (53.70%), Postives = 36/54 (66.67%), Query Frame = 0 

Query: 159 PEPSPEKKDERRRRRRTEKKICNKPGHGALDYYNRMNFSFQGCHPPSQLAAMTA 213
           P PSP        R R+  +IC + GH ALD +NRMN+SFQG HPP++LAAM A
Sbjct: 285 PSPSPAASAALPSRSRSPCQICKREGHQALDCFNRMNYSFQGRHPPTKLAAMVA 338

[Close]
BLAST of Lag0023102 vs. ExPASy TrEMBL
Match: A0A5B7BD59 (Retrotran_gag_3 domain-containing protein OS=Davidia involucrata OX=16924 GN=Din_035142 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 6.2e-06
Identity = 26/43 (60.47%), Postives = 33/43 (76.74%), Query Frame = 0 

Query: 178 KICNKPGHGALDYYNRMNFSFQGCHPPSQLAAMTAAVDLAMCN 221
           +ICNKP H ALD Y+RMN+++QG HPPSQLAAM A+   +  N
Sbjct: 323 QICNKPNHSALDCYHRMNYAYQGRHPPSQLAAMAASYGSSQTN 365

[Close]
BLAST of Lag0023102 vs. ExPASy TrEMBL
Match: A0A2N9EE76 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS905 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 6.2e-06
Identity = 24/36 (66.67%), Postives = 31/36 (86.11%), Query Frame = 0 

Query: 178 KICNKPGHGALDYYNRMNFSFQGCHPPSQLAAMTAA 214
           +IC KP H  +D YNRMN+S+QGCHPP++LAAMT+A
Sbjct: 593 QICYKPSHTTIDCYNRMNYSYQGCHPPTKLAAMTSA 628

[Close]
BLAST of Lag0023102 vs. ExPASy TrEMBL
Match: A0A2N9HW45 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS44177 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 8.1e-06
Identity = 25/36 (69.44%), Postives = 31/36 (86.11%), Query Frame = 0 

Query: 178 KICNKPGHGALDYYNRMNFSFQGCHPPSQLAAMTAA 214
           +IC K GH ALD YNRMNFS+QGCHPP++LAA+ +A
Sbjct: 330 QICYKQGHTALDCYNRMNFSYQGCHPPAKLAALASA 365

[Close]
BLAST of Lag0023102 vs. ExPASy TrEMBL
Match: A0A2N9F5W2 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS10282 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 8.1e-06
Identity = 25/36 (69.44%), Postives = 31/36 (86.11%), Query Frame = 0 

Query: 178 KICNKPGHGALDYYNRMNFSFQGCHPPSQLAAMTAA 214
           +IC K GH ALD YNRMNFS+QGCHPP++LAA+ +A
Sbjct: 300 QICYKQGHTALDCYNRMNFSYQGCHPPAKLAALASA 335

[Close]
BLAST of Lag0023102 vs. ExPASy TrEMBL
Match: A0A5B7B5R4 (Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_033137 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.4e-05
Identity = 25/36 (69.44%), Postives = 31/36 (86.11%), Query Frame = 0 

Query: 178 KICNKPGHGALDYYNRMNFSFQGCHPPSQLAAMTAA 214
           +ICNKPGH ALD Y+RM+ S+ G HPP+QLAAMTA+
Sbjct: 47  QICNKPGHSALDCYHRMDHSYHGRHPPAQLAAMTAS 82

The following BLAST results are available for this feature:
BLAST of Lag0023102 vs. NCBI nr
Match NameE-valueIdentityDescription
KAF8406331.11.4e-0469.44hypothetical protein HHK36_008417 [Tetracentron sinense][more]
CAN78270.11.4e-0451.06hypothetical protein VITISV_006712 [Vitis vinifera][more]
XP_016902697.11.9e-0475.76PREDICTED: uncharacterized protein LOC107991825 [Cucumis melo][more]
KAA8538438.11.9e-0453.70hypothetical protein F0562_028016 [Nyssa sinensis][more]
KAA8540914.12.4e-0453.70hypothetical protein F0562_024948 [Nyssa sinensis][more]
BLAST of Lag0023102 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Lag0023102 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5B7BD596.2e-0660.47Retrotran_gag_3 domain-containing protein OS=Davidia involucrata OX=16924 GN=Din... [more]
A0A2N9EE766.2e-0666.67Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS905 PE=4 SV=1[more]
A0A2N9HW458.1e-0669.44Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS44177 PE=4 SV=1[more]
A0A2N9F5W28.1e-0669.44Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS10282 PE=4 SV=1[more]
A0A5B7B5R42.4e-0569.44Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_033137... [more]
BLAST of Lag0023102 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 118..184
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 118..170

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0023102.1Lag0023102.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding