Lag0022843 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0022843
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr7: 39300410 .. 39304767 (-)
RNA-Seq Expression	Lag0022843
Synteny	Lag0022843

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTGGGCATCACGATGTGACTGGATCTATCGGTATTGGTTAGAATATCGTAGGGCTGCTGGGGTTTCAAATGCTTGTCGAACAACTCAATATGGGGAGGTGCTAACGGGAAGGGATCGAAGTTCAGCAAGGGTTATGGTTTTTTCAGATGCTTCGGTTCGGGCCCAACAAGTGGGTGTCGGTGTTGGGGTGCTTGTTGCTGATGGCAGTGGCGGTATCCTATGTGCCATGGAACATTATGAGAATTGTATGTTATCACTGTTAGCGAGTGAGGTCCATGCATTTGTCCAAGCTGTAAGGCTTTTTAATCGAATGAATGTTCATGAAGCTACTTTACATTCTGATTCTTCTACTTCTATCAAAATGATCAATGGTGAGCAGGAAACAAATTCAGAAGTACTGTTGATTTGATACTTAACATTCAGAGTCTTCTATTTTTCTTACAGCTGATGTGGCTGCCAGGGTGGAAAGCTAAAGCCTTCTCTTAGATGATTGAAGCAAGAGAAGCACGTGACTGTTACTTAAAATCAAGCTCTCAGTATTGTATAAATATACCACTGTATTCAGGCTCTAAGGTATCTCAAATGAGCTTTGCTTTCACCCGTGTAATCTTTGTATTACTTTTAATAAAATCCCTCTCTCACTGGTTCCAAAAGTGGATGTAGACCTTTGTGTCGAACCACTATAATCATTGTGTCATCTCTCTTCCCTCTCTACCTCTTTACTCTGTTCTTCTTCACCAATACTTGTTGCTACTGTGAGTGAGTGAATTTGTGTGTTTGAGATTTCTGTTCAAACCAACAAGTACACCATTGGATATCCCAGATTCAGAATTTGCGCAAGGATTTTGGGTCTTTGACGTTTACTTATATCAGAAGATATTAAAATTCCAAGGCGGATGCTTTGGCTAGGAATGCTCTGCGAAAGTCACAATCTATGTTGTGGATGTCTGATTTTTCTGATTGGTTAAAGTCGATGAGATAAAATTCCCATTGTAAATGTTCTAGTACATGCAATTTTTAATGAAAGATGAACTTTTTATGTCAAAAAATATATATACATATATATATATATATTGACTTTTCATTGTTTTTTCAAAATTTACTCTACTAACTTGATCATTAGAATTCATTTTTCATACATTACACTAATTAAATTAGGCATCACCAATGAAACAAGGTATCTTTTAGAAGGAGAGACTGTTTCCATCTCCAAATGCTTGAGAGATTGCAATCGAGCTGCGCATACGGTTGCTAGAGCAGCAATGGATGATGGGATCTTTTTGTATTTTTTTGGGCTGCCTCATCCTTCTATTTCCGAAGGAGAGGTTATTGTTAGGGATGCCTGTATCCCTTTGTATTTTCGGAAAATTCTAAACAAATTGGTTGTTGGGAGTTGATTCTTTAAGGAAGTATTTATTAAAAAAAAAAACGTGAGTTAAAAATTTTTGGTCATTGCTTCATTGTTGAAGATGATCGGATATGTAGCAAATAGATCCTTCACATTCTATCATTACTATGTAATAATTAAGAGATCATTTTTGCAATTCATCCATTAAAAAAAAAAAAAAGAAGAAAGATTAATAGACATCTAAAGCTTTACTGTTACTGAGAAGTTGAAAGGTTTAGAGAGCAAAAAGAGTAAAAATAAAAAAAAACTGAAAGACGTTGTAAAAAAAATGTTTTAGTTATTTCTAAGTGGTGAACAATTATAAGCCTATTATTACTTATTTAATTAATATAACTTACATAATCTTATTAATTCCCTTCATAAATTTAATCATATTCTTTCCGTTTCTCATGTTACATCTCTATATAAACCCTTGCATGTCATGAGATTAAGAATTCATAGCCAAATACAAAATTCTACTTACAAATTTTGTCTTTCTTCGTTGTTCGCTGTTCTTCTAAAATGACTTATCTTTTCAAACTCGTTATTATCGTGTCTTTTATTACTTTCATCTTCTCATCTACAATAGAATCAAGGTCAAATTCTAAAATGAACTTGGTTGCACGATTGAAATTTGAAGACAAGACATCAAGTTGTTGGGAATCTTTGATCCAACTTCGAGCTTGCAGCAGTGATATTGTCATGCTCTTTCTCAATGGTAAAGCCCACCTGAGTCTCCATTGTTGCCACGCTATTAGAGTCATTCAACATGATTGTTGGCATGCATTACTCAACTCCGTGGGATACACAATAGAAGAACGTAACATCCTTGAAATCTATTGTGAGACTATTGTTGATACCCTTCCAACATCGCCGCCACCACTATCTGTTGAGCAAATTATTGTGCCTAAAATTCTTGCTCCTTGAAAAGTGTAATAGTCGTTTTTGCAATAAAATGTTACGAGGTTCTATCTTCTTGAGTTATATTTTAATCATGGCTAAAAGTTTAATCTTTTTAAGATTCTCATCACACATTGCTAATAATTTATCAATATTTACAAAAGATATTGCATTAGACCTATCTTGAACTTCTATTAATTTTAATCACATTGCAGACTTAATTCAAATTAAATAGCAAGTTTAAGCAATTCTCAATATGAAGAAGAAATTGAAAAAAATAATAATAATAAAACACTAAGTGTTGAGAGTTTGTTCTCCCATTTCTCCAATGTATCTAATATATTTGGCCTGAGAGAGAGAAATAAACTTCATTATTAAGACATACTCAAATAATTGGTTCATCAAGTTTTCATGTTTTCAAAAGTTAGAGTTTTCTTTTATTTATTTATTTATTGAGAATTCCTATATATTTCAAAATGTATTTAAAAGTATAGCCAAAATTTTTTTAAAACTAAGGCAACAATGAAAAAAGAAAAAGTATTATCAAATCTATTTATCTTTCTTTGACGTTTCATGCTTTAAAAAAAAACATGTGAAATTGTAGCCAAATTTTCAAAAGGTTTATTATTAACATTTTTTTATTTTTCAACATTTGGCTATATTTCACAAATAATATTGAAAATTAGATTAGAAAACAAAGATAATAGTTAGGGAAGCATAATTCGTTCCCCTTGCTAATAAGAAAATCAAATGGTTGCTCTTCCAGAGTGAGAAAAGGCTCTTGGCAATCGATGACTAATTTCTTACTTAAAAATCGTCTCATAATTATTGAATATGAAATTCTGAATGATCGACTTTTTTCAAGAACGGCCAAAACTTTATCAAACGAACTCTAAAATAATGGTTTTCAAAATTTTGTATGTTTCTAAATCGCCTCAAAATTTTGTTTGTTTTTTTTTTTTCCAAAAGAATGTATTTTAAAATTATTTTATTTTATTTTTTTGAAAAATGTATTTTAAAATTATTAATTCTACCTTAGTATTAAATATTATTTTTCGAAGTCTTTTAAAAAAAATATATTATTTTTCGAAGAAGAAGAAATTGAAATATGGTGGAGAGTCAAAAGTGGAAATTAAGAGAGACACCTAAAAGTTTGTTTATTTTTTTTAATTGCGAAGTTCAAAGAATGGATTTAATTAAAATTTATTAGGATCAACTAATATAAATTGCATCTGCAACCGACTGCTAATTAATTACCAATTTTGATCAATTTGTAACGAGTTTAATCAAAAATTGTTTGCTGATTTTTTTTTCAAAGAAACTTCACAGTTAAGGTAGGAATGGTGAAGAGGTAAAAGGATAGAAAAGAGAAAACAGAGACATTATAAAATAACTAATTAAGTAAATTTATTAAAATTTGCTTTGATAATCATTTAGGTCCCGTTTTTTTTTAGTACATCAACATTTGGGAGTGGGGGTGTTCACACGAAATTTTCGAAGAGAAAATTTAATTCGTGAAACGACTTCTTGTATATATTGATTTCTATGTATATGTAATTGTGGAATACAATCTCTAGTTACACTCCTTTGATGCTAGCTTTGATCTTCTGAATCTTCAAGAAACTTTAATCTTCGGAGTCTTGAAGGTTTGTTCACCTTTGAAGGATTCTCCTGGATGATTGAAGTAGACTTCAGGCTTCAAGTCTTCAGTCTTTAGAAGACTTCACTTCAATCTTCAAGCTTGCAGGAAAATTTAGATCTTGGTCTTCAAGGTCTTGTGGGAGGATTGGAGCTTCAATCTTCAGGATCTTGCAGACAGCTTCAATCTTCTAAATCTTCAGGGTTTTGCAGAGAGCTTTGATCTTCTTAATCTTGTAGAGGCTTCAGTCTTCAGAGTCTTGGAGGAAGCTTCAAGCTTTAGAACTTTGCAGAAGCTTCGATCTTCAGAGTCTTGCAGCAGGATCTGGACTTCAATCTTCAAGATTCTTGCAAGAGGAATGAAGCTTCAATCTTCAAGTCTTGTAGAAGGAATGGAGCTTCAGTCTTCAAGTCTTGTAGGAGGATAG

mRNA sequence

ATGGATTGGGCATCACGATGTGACTGGATCTATCGGTATTGGTTAGAATATCGTAGGGCTGCTGGGGTTTCAAATGCTTGTCGAACAACTCAATATGGGGAGGTGCTAACGGGAAGGGATCGAAGTTCAGCAAGGGTTATGGTTTTTTCAGATGCTTCGGTTCGGGCCCAACAAGTGGGTGTCGGTGTTGGGGTGCTTGTTGCTGATGGCAGTGGCGGTATCCTATGTGCCATGGAACATTATGAGAATTGTATGTTATCACTGTTAGCGAGTGAGGTCCATGCATTTGTCCAAGCTGTAAGGCTTTTTAATCGAATGAATGTTCATGAAGCTACTTTACATTCTGATTCTTCTACTTCTATCAAAATGATCAATGGCATCACCAATGAAACAAGGTATCTTTTAGAAGGAGAGACTGTTTCCATCTCCAAATGCTTGAGAGATTGCAATCGAGCTGCGCATACGGTTGCTAGAGCAGCAATGGATGATGGGATCTTTTTGTATTTTTTTGGGCTGCCTCATCCTTCTATTTCCGAAGGAGAGTTACACTCCTTTGATGCTAGCTTTGATCTTCTGAATCTTCAAGAAACTTTAATCTTCGGAGTCTTGAAGGTCTTGTGGGAGGATTGGAGCTTCAATCTTCAGGATCTTGCAGACAGCTTCAATCTTCTAAATCTTCAGGGTTTTGCAGAGAGCTTTGATCTTCTTAATCTTGTAGAGGCTTCAGTCTTCAGAGTCTTGGAGGAAGCTTCAAGCTTTAGAACTTTGCAGAAGCTTCGATCTTCAGAGTCTTGCAGCAGGATCTGGACTTCAATCTTCAAGATTCTTGCAAGAGGAATGAAGCTTCAATCTTCAAGTCTTGTAGAAGGAATGGAGCTTCAGTCTTCAAGTCTTGTAGGAGGATAG

Coding sequence (CDS)

ATGGATTGGGCATCACGATGTGACTGGATCTATCGGTATTGGTTAGAATATCGTAGGGCTGCTGGGGTTTCAAATGCTTGTCGAACAACTCAATATGGGGAGGTGCTAACGGGAAGGGATCGAAGTTCAGCAAGGGTTATGGTTTTTTCAGATGCTTCGGTTCGGGCCCAACAAGTGGGTGTCGGTGTTGGGGTGCTTGTTGCTGATGGCAGTGGCGGTATCCTATGTGCCATGGAACATTATGAGAATTGTATGTTATCACTGTTAGCGAGTGAGGTCCATGCATTTGTCCAAGCTGTAAGGCTTTTTAATCGAATGAATGTTCATGAAGCTACTTTACATTCTGATTCTTCTACTTCTATCAAAATGATCAATGGCATCACCAATGAAACAAGGTATCTTTTAGAAGGAGAGACTGTTTCCATCTCCAAATGCTTGAGAGATTGCAATCGAGCTGCGCATACGGTTGCTAGAGCAGCAATGGATGATGGGATCTTTTTGTATTTTTTTGGGCTGCCTCATCCTTCTATTTCCGAAGGAGAGTTACACTCCTTTGATGCTAGCTTTGATCTTCTGAATCTTCAAGAAACTTTAATCTTCGGAGTCTTGAAGGTCTTGTGGGAGGATTGGAGCTTCAATCTTCAGGATCTTGCAGACAGCTTCAATCTTCTAAATCTTCAGGGTTTTGCAGAGAGCTTTGATCTTCTTAATCTTGTAGAGGCTTCAGTCTTCAGAGTCTTGGAGGAAGCTTCAAGCTTTAGAACTTTGCAGAAGCTTCGATCTTCAGAGTCTTGCAGCAGGATCTGGACTTCAATCTTCAAGATTCTTGCAAGAGGAATGAAGCTTCAATCTTCAAGTCTTGTAGAAGGAATGGAGCTTCAGTCTTCAAGTCTTGTAGGAGGATAG

Protein sequence

MDWASRCDWIYRYWLEYRRAAGVSNACRTTQYGEVLTGRDRSSARVMVFSDASVRAQQVGVGVGVLVADGSGGILCAMEHYENCMLSLLASEVHAFVQAVRLFNRMNVHEATLHSDSSTSIKMINGITNETRYLLEGETVSISKCLRDCNRAAHTVARAAMDDGIFLYFFGLPHPSISEGELHSFDASFDLLNLQETLIFGVLKVLWEDWSFNLQDLADSFNLLNLQGFAESFDLLNLVEASVFRVLEEASSFRTLQKLRSSESCSRIWTSIFKILARGMKLQSSSLVEGMELQSSSLVGG

Homology

The following BLAST results are available for this feature:

BLAST of Lag0022843 vs.


Match Name	E-value	Identity	Description

BLAST of Lag0022843 vs.


Match Name	E-value	Identity	Description

BLAST of Lag0022843 vs.


Match Name	E-value	Identity	Description

BLAST of Lag0022843 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 43..164 e-value: 2.9E-8 score: 35.8
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 46..167

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0022843.1	Lag0022843.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding