Lag0022841 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0022841
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionReverse transcriptase domain-containing protein
Locationchr7: 39278910 .. 39279440 (-)
RNA-Seq ExpressionLag0022841
SyntenyLag0022841
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGACTAAACTGAGAGGTAACAAAGGTGACAAATTGCGAAGGGAGTTACAATTCGATTGTGGTTTAGCTGTTCCTAGTGAGGGGAAGAGTGGGGGTATGTTTCTTTTTTGGCAAAAGGAAACTAATGTTAATATTAGGTCCTACTTTAAAGGTCACATAAAGGCAGTTATTGTAGAAAGGAATTGGCAATGCAGGTTTACTGGGATTTATGGGAATCCTAACAGGGAGTTGCACCATACTACTTGGACTCTCATAAGTAGACTTAAGGACAACAACAATCTCCCATGGATTCTCGGAGGGGATTTCAATGAAATTATCAATCAGACAGAAAAGATAGGGGGTAGAGTCAGATCGGAATCGGCGATGCAGCAGTTCCGTGATACCATTGATCTCTGCGAGTTGCAAGATCCTGGTTACATTAGAGTGGACTTCACATGGTGTAATAACCATGTGAGCAGTGAAAAAGTTTGGGAGCGCCTAGAACGGTTTCTTCTAAATAGAGATATGGACGGTGTGCTCTATGTTTAA

mRNA sequence

ATGGAGACTAAACTGAGAGGTAACAAAGGTGACAAATTGCGAAGGGAGTTACAATTCGATTGTGGTTTAGCTGTTCCTAGTGAGGGGAAGAGTGGGGGTATGTTTCTTTTTTGGCAAAAGGAAACTAATGTTAATATTAGGTCCTACTTTAAAGGTCACATAAAGGCAGTTATTGTAGAAAGGAATTGGCAATGCAGGTTTACTGGGATTTATGGGAATCCTAACAGGGAGTTGCACCATACTACTTGGACTCTCATAAGTAGACTTAAGGACAACAACAATCTCCCATGGATTCTCGGAGGGGATTTCAATGAAATTATCAATCAGACAGAAAAGATAGGGGGTAGAGTCAGATCGGAATCGGCGATGCAGCAGTTCCGTGATACCATTGATCTCTGCGAGTTGCAAGATCCTGGTTACATTAGAGTGGACTTCACATGGTGTAATAACCATGTGAGCAGTGAAAAAGTTTGGGAGCGCCTAGAACGGTTTCTTCTAAATAGAGATATGGACGGTGTGCTCTATGTTTAA

Coding sequence (CDS)

ATGGAGACTAAACTGAGAGGTAACAAAGGTGACAAATTGCGAAGGGAGTTACAATTCGATTGTGGTTTAGCTGTTCCTAGTGAGGGGAAGAGTGGGGGTATGTTTCTTTTTTGGCAAAAGGAAACTAATGTTAATATTAGGTCCTACTTTAAAGGTCACATAAAGGCAGTTATTGTAGAAAGGAATTGGCAATGCAGGTTTACTGGGATTTATGGGAATCCTAACAGGGAGTTGCACCATACTACTTGGACTCTCATAAGTAGACTTAAGGACAACAACAATCTCCCATGGATTCTCGGAGGGGATTTCAATGAAATTATCAATCAGACAGAAAAGATAGGGGGTAGAGTCAGATCGGAATCGGCGATGCAGCAGTTCCGTGATACCATTGATCTCTGCGAGTTGCAAGATCCTGGTTACATTAGAGTGGACTTCACATGGTGTAATAACCATGTGAGCAGTGAAAAAGTTTGGGAGCGCCTAGAACGGTTTCTTCTAAATAGAGATATGGACGGTGTGCTCTATGTTTAA

Protein sequence

METKLRGNKGDKLRRELQFDCGLAVPSEGKSGGMFLFWQKETNVNIRSYFKGHIKAVIVERNWQCRFTGIYGNPNRELHHTTWTLISRLKDNNNLPWILGGDFNEIINQTEKIGGRVRSESAMQQFRDTIDLCELQDPGYIRVDFTWCNNHVSSEKVWERLERFLLNRDMDGVLYV
Homology
BLAST of Lag0022841 vs. NCBI nr
Match: XP_042988712.1 (uncharacterized protein LOC122316247 [Carya illinoinensis])

HSP 1 Score: 162.9 bits (411), Expect = 2.5e-36
Identity = 77/169 (45.56%), Postives = 108/169 (63.91%), Query Frame = 0

Query: 2   ETKLRGNKGDKLRRELQFDCGLAVPSEGKSGGMFLFWQKETNVNIRSYFKGHIKAVI--V 61
           ETKL   K + ++R L ++C  AV SEG+SGG+ L WQ+ETN+N++SY K HI A+I   
Sbjct: 36  ETKLHVTKMECVKRLLGYECCFAVSSEGRSGGLALMWQEETNLNVQSYSKNHIDALIHNA 95

Query: 62  ERNWQCRFTGIYGNPNRELHHTTWTLISRLKDNNNLPWILGGDFNEIINQTEKIGGRVRS 121
           E + Q +FTG+YG+P+ EL   TW  I  L+   ++PW++ GDFNE++   EK GGR R 
Sbjct: 96  EHDGQWQFTGVYGHPDTELRQETWNTIRSLRGTVSVPWLVCGDFNEVLCWQEKRGGRNRP 155

Query: 122 ESAMQQFRDTIDLCELQDPGYIRVDFTWCNNHVSSEKVWERLERFLLNR 169
           E  M+ FR  +D C   D G++   FTWCN       V ERL+R+L N+
Sbjct: 156 ERQMRTFRQLLDDCSFVDLGFMGPPFTWCNKRDVQHTVSERLDRYLANQ 204

BLAST of Lag0022841 vs. NCBI nr
Match: XP_030970584.1 (uncharacterized protein LOC115990959 [Quercus lobata])

HSP 1 Score: 158.3 bits (399), Expect = 6.1e-35
Identity = 69/164 (42.07%), Postives = 104/164 (63.41%), Query Frame = 0

Query: 2   ETKLRGNKGDKLRRELQFDCGLAVPSEGKSGGMFLFWQKETNVNIRSYFKGHIKAVIVER 61
           ETK+R  + ++++  + F  GL VP  G+SGG+ L W +ET++ I+S+   HI AVI E 
Sbjct: 36  ETKVRKKRMERIKERIGFANGLFVPCHGRSGGLALLWTRETDLEIKSFSNHHIDAVITEE 95

Query: 62  --NWQCRFTGIYGNPNRELHHTTWTLISRLKDNNNLPWILGGDFNEIINQTEKIGGRVRS 121
             N++ RFTG YG+P   L   +W L+  L+  + LPW   GDFNEI++  EK GG +RS
Sbjct: 96  NSNFKWRFTGFYGHPQTHLRQKSWDLLDFLQGQSQLPWFCFGDFNEILSMEEKTGGAIRS 155

Query: 122 ESAMQQFRDTIDLCELQDPGYIRVDFTWCNNHVSSEKVWERLER 164
           +  M +FR+ +++C  +D GY+  DFTWCN      +V+ RL+R
Sbjct: 156 QGQMDKFREVVNVCGFKDLGYMGPDFTWCNMQTGDSRVYLRLDR 199

BLAST of Lag0022841 vs. NCBI nr
Match: XP_030936142.1 (uncharacterized protein LOC115961277 [Quercus lobata])

HSP 1 Score: 154.8 bits (390), Expect = 6.7e-34
Identity = 68/170 (40.00%), Postives = 104/170 (61.18%), Query Frame = 0

Query: 2   ETKLRGNKGDKLRRELQFDCGLAVPSEGKSGGMFLFWQKETNVNIRSYFKGHIKAVIVER 61
           ETK+R  + ++++  + F  GL VP  G+SGG+ L W +ET++ I+S+   HI AVI E 
Sbjct: 36  ETKVRKKRMERIKERVGFANGLFVPCHGRSGGLALLWTRETDLEIKSFSSHHIDAVITEE 95

Query: 62  --NWQCRFTGIYGNPNRELHHTTWTLISRLKDNNNLPWILGGDFNEIINQTEKIGGRVRS 121
             N++ RFT  YG+P   L   +W L+  L+D + LPW   GDFNEI++  EK GG  RS
Sbjct: 96  NSNFKWRFTSFYGHPQTHLRQKSWDLLEYLEDQSQLPWFCFGDFNEILSMEEKSGGATRS 155

Query: 122 ESAMQQFRDTIDLCELQDPGYIRVDFTWCNNHVSSEKVWERLERFLLNRD 170
           +  M +F++ +++C  +D G++  DFTWCN      +V+ RL+R     D
Sbjct: 156 QGQMDKFQEVVNVCGFKDLGFLGPDFTWCNMQSGDSRVYLRLDRAFATSD 205

BLAST of Lag0022841 vs. NCBI nr
Match: XP_030970961.1 (uncharacterized protein LOC115991405 [Quercus lobata])

HSP 1 Score: 154.5 bits (389), Expect = 8.8e-34
Identity = 69/169 (40.83%), Postives = 103/169 (60.95%), Query Frame = 0

Query: 2   ETKLRGNKGDKLRRELQFDCGLAVPSEGKSGGMFLFWQKETNVNIRSYFKGHIKAVIVE- 61
           ETKLR    ++ +  + F  GL +PS G+SGG+ L W+KE NV+++S+   HI A++ E 
Sbjct: 36  ETKLRVRSMERKKMSIGFTNGLVIPSHGRSGGLALLWRKEINVDVQSFSDRHIDAIVTED 95

Query: 62  RNWQCRFTGIYGNPNRELHHTTWTLISRLKDNNNLPWILGGDFNEIINQTEKIGGRVRSE 121
           R ++ R TG YGNP       +W L+  L     LPW+  GDFNEI++ +EK+GG  RS+
Sbjct: 96  RGFKWRITGFYGNPEVHRRKESWELLKVLSRKFQLPWLCFGDFNEIVSTSEKMGGARRSQ 155

Query: 122 SAMQQFRDTIDLCELQDPGYIRVDFTWCNNHVSSEKVWERLERFLLNRD 170
             M  FR+ ID C   D G+  ++FTWCN      +++ RL+R L+ +D
Sbjct: 156 RQMDDFREAIDCCRFMDLGFCGLEFTWCNMQEGRHRMYLRLDRALVTQD 204

BLAST of Lag0022841 vs. NCBI nr
Match: XP_030958760.1 (uncharacterized protein LOC115980671 [Quercus lobata])

HSP 1 Score: 153.3 bits (386), Expect = 2.0e-33
Identity = 69/169 (40.83%), Postives = 102/169 (60.36%), Query Frame = 0

Query: 2   ETKLRGNKGDKLRRELQFDCGLAVPSEGKSGGMFLFWQKETNVNIRSYFKGHIKAVIVE- 61
           ETKLR    ++ +  + F  GL +PS G+SGG+ L W+KE NV+++S+   HI A++ E 
Sbjct: 36  ETKLRVRSMERKKMSIGFTNGLVIPSHGRSGGLALLWRKEINVDVQSFSDRHIDAIVTED 95

Query: 62  RNWQCRFTGIYGNPNRELHHTTWTLISRLKDNNNLPWILGGDFNEIINQTEKIGGRVRSE 121
           R ++ R TG YGNP       +W L+  L     LPW+  GDFNEI++ +EK+GG  RS+
Sbjct: 96  RGFKWRITGFYGNPEVHRRKESWELLKVLSRKFQLPWLCFGDFNEIVSTSEKMGGARRSQ 155

Query: 122 SAMQQFRDTIDLCELQDPGYIRVDFTWCNNHVSSEKVWERLERFLLNRD 170
             M  FR+ ID C   D G+   +FTWCN      +++ RL+R L+ +D
Sbjct: 156 RQMDDFREAIDCCRFMDLGFCGPEFTWCNMQEGRHRMYLRLDRALVTQD 204

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_042988712.12.5e-3645.56uncharacterized protein LOC122316247 [Carya illinoinensis][more]
XP_030970584.16.1e-3542.07uncharacterized protein LOC115990959 [Quercus lobata][more]
XP_030936142.16.7e-3440.00uncharacterized protein LOC115961277 [Quercus lobata][more]
XP_030970961.18.8e-3440.83uncharacterized protein LOC115991405 [Quercus lobata][more]
XP_030958760.12.0e-3340.83uncharacterized protein LOC115980671 [Quercus lobata][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036691Endonuclease/exonuclease/phosphatase superfamilyGENE3D3.60.10.10Endonuclease/exonuclease/phosphatasecoord: 1..174
e-value: 7.6E-16
score: 60.6
IPR036691Endonuclease/exonuclease/phosphatase superfamilySUPERFAMILY56219DNase I-likecoord: 18..169
NoneNo IPR availablePANTHERPTHR33710:SF35SUBFAMILY NOT NAMEDcoord: 61..168
NoneNo IPR availablePANTHERPTHR33710BNAC02G09200D PROTEINcoord: 61..168

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0022841.1Lag0022841.1mRNA