Lag0022837 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0022837
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	RING-type E3 ubiquitin transferase
Location	chr7: 39213295 .. 39213744 (-)
RNA-Seq Expression	Lag0022837
Synteny	Lag0022837

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTCTTCAATGTTTCAAAATTCCAGCCACTCCGATGGTCGGATTCTCACTTTTTCGGCGGTTCATGATCAATGCGAAGCAATTTTTCTGGTGACCCTTTTGGCTCGATCTCTGCCGCAAATATGCAATCGCCAAAAGAAAATCTTTGTAACCCAAAAACGAAACGCTCGAGAAATGATTCGACAAATCAGAATCTTGTTGATATTTTTGGAGGAGCTTCACGACATTTCAACTGCTCTTCCGGATTCAGTCGTACTCTGTTTTTCAGAGCTTCACCTCACGTTTCACAAAATCTTGTTATTGTTCGAAGATCGTTGTTGTTCTATTGCAAGGATTTTGATGTTAATGAAATCCCAATTCGTTGCCACATTAGTTGTGGGTTTTAATTTGAGCTCTCGCGACGGCTCTCAATGTGTTTCCGTTGAATCAGATCGATACGAGCGATGA

mRNA sequence

ATGGGTTCTTCAATGTTTCAAAATTCCAGCCACTCCGATGGTCGGATTCTCACTTTTTCGGCGGTTCATGATCAATGCGAAGCAATTTTTCTGGTGACCCTTTTGGCTCGATCTCTGCCGCAAATATGCAATCGCCAAAAGAAAATCTTTGTAACCCAAAAACGAAACGCTCGAGAAATGATTCGACAAATCAGAATCTTGTTGATATTTTTGGAGGAGCTTCACGACATTTCAACTGCTCTTCCGGATTCAGTCGTACTCTGTTTTTCAGAGCTTCACCTCACGTTTCACAAAATCTTGTTATTGTTCGAAGATCGTTGTTGTTCTATTGCAAGGATTTTGATGTTAATGAAATCCCAATTCGTTGCCACATTAGTTGTGGGTTTTAATTTGAGCTCTCGCGACGGCTCTCAATGTGTTTCCGTTGAATCAGATCGATACGAGCGATGA

Coding sequence (CDS)

ATGGGTTCTTCAATGTTTCAAAATTCCAGCCACTCCGATGGTCGGATTCTCACTTTTTCGGCGGTTCATGATCAATGCGAAGCAATTTTTCTGGTGACCCTTTTGGCTCGATCTCTGCCGCAAATATGCAATCGCCAAAAGAAAATCTTTGTAACCCAAAAACGAAACGCTCGAGAAATGATTCGACAAATCAGAATCTTGTTGATATTTTTGGAGGAGCTTCACGACATTTCAACTGCTCTTCCGGATTCAGTCGTACTCTGTTTTTCAGAGCTTCACCTCACGTTTCACAAAATCTTGTTATTGTTCGAAGATCGTTGTTGTTCTATTGCAAGGATTTTGATGTTAATGAAATCCCAATTCGTTGCCACATTAGTTGTGGGTTTTAATTTGAGCTCTCGCGACGGCTCTCAATGTGTTTCCGTTGAATCAGATCGATACGAGCGATGA

Protein sequence

MGSSMFQNSSHSDGRILTFSAVHDQCEAIFLVTLLARSLPQICNRQKKIFVTQKRNAREMIRQIRILLIFLEELHDISTALPDSVVLCFSELHLTFHKILLLFEDRCCSIARILMLMKSQFVATLVVGFNLSSRDGSQCVSVESDRYER

Homology

[Close]

BLAST of Lag0022837 vs. NCBI nr
Match: XP_023000658.1 (U-box domain-containing protein 19-like [Cucurbita maxima])

HSP 1 Score: 147.5 bits (371), Expect = 9.1e-32
Identity = 89/123 (72.36%), Postives = 92/123 (74.80%), Query Frame = 0


Query: 5   MFQNSSHSDGRILTFSAVHDQCEAIFLVTLLARSLP---QICNRQKKIFVTQKRNAREMI 64
           MFQNS  SD RILTF AVH  CEAI   TLLA  +    QICN Q K FVTQKRNARE I
Sbjct: 1   MFQNSKSSDRRILTFPAVH-PCEAISPATLLASLIDLCRQICNHQLKTFVTQKRNARETI 60

Query: 65  RQIRILLIFLEELHDISTALPDSVVLCFSELHLTFHKILLLFEDRCCSIARILMLMKSQF 124
           RQI ILLIF EEL D+S  LPDSVVLCFSELHLTF KIL LFED   S A+I MLMKSQF
Sbjct: 61  RQIGILLIFFEELRDVSDVLPDSVVLCFSELHLTFQKILFLFEDCSRSNAKIWMLMKSQF 120

[Close]

BLAST of Lag0022837 vs. NCBI nr
Match: KAG7019826.1 (U-box domain-containing protein 19, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 146.4 bits (368), Expect = 2.0e-31
Identity = 89/123 (72.36%), Postives = 93/123 (75.61%), Query Frame = 0


Query: 5   MFQNSSHSDGRILTFSAVHDQCEAIFLVTLLARSLP---QICNRQKKIFVTQKRNAREMI 64
           MFQNS  SD RILTF AVH  CEAI   TLLA  +    QICNRQ K FVTQKRNARE I
Sbjct: 1   MFQNSISSDRRILTFPAVH-PCEAISPATLLASLIDLCRQICNRQLKTFVTQKRNARETI 60

Query: 65  RQIRILLIFLEELHDISTALPDSVVLCFSELHLTFHKILLLFEDRCCSIARILMLMKSQF 124
           RQI ILLIF EEL D+S  LPDSVVLCFSELHLTF KIL LFED   S A+I +LMKSQF
Sbjct: 61  RQIGILLIFFEELRDMSDVLPDSVVLCFSELHLTFQKILFLFEDCSRSNAKIWILMKSQF 120

[Close]

BLAST of Lag0022837 vs. NCBI nr
Match: XP_022923709.1 (LOW QUALITY PROTEIN: U-box domain-containing protein 19-like [Cucurbita moschata])

HSP 1 Score: 144.4 bits (363), Expect = 7.7e-31
Identity = 88/123 (71.54%), Postives = 92/123 (74.80%), Query Frame = 0


Query: 5   MFQNSSHSDGRILTFSAVHDQCEAIFLVTLLARSLP---QICNRQKKIFVTQKRNAREMI 64
           MFQNS  SD RILTF AVH  CEAI   TLLA  +    QICNRQ K FVTQKRNARE I
Sbjct: 1   MFQNSISSDRRILTFPAVH-PCEAISPATLLASLIDLCRQICNRQLKTFVTQKRNARETI 60

Query: 65  RQIRILLIFLEELHDISTALPDSVVLCFSELHLTFHKILLLFEDRCCSIARILMLMKSQF 124
           RQI ILLIF EEL D+   LPDSVVLCFSELHLTF KIL LFED   S A+I +LMKSQF
Sbjct: 61  RQIGILLIFFEELRDMPDVLPDSVVLCFSELHLTFQKILFLFEDCSRSNAKIWILMKSQF 120

[Close]

BLAST of Lag0022837 vs. NCBI nr
Match: KAG6584229.1 (U-box domain-containing protein 19, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 144.4 bits (363), Expect = 7.7e-31
Identity = 88/123 (71.54%), Postives = 92/123 (74.80%), Query Frame = 0


Query: 5   MFQNSSHSDGRILTFSAVHDQCEAIFLVTLLARSLP---QICNRQKKIFVTQKRNAREMI 64
           MFQNS  SD RILTF AVH  CEAI   TLLA  +    QICN Q K FVTQKRNARE I
Sbjct: 1   MFQNSISSDRRILTFPAVH-PCEAISPATLLASLIDLCRQICNHQLKTFVTQKRNARETI 60

Query: 65  RQIRILLIFLEELHDISTALPDSVVLCFSELHLTFHKILLLFEDRCCSIARILMLMKSQF 124
           RQI ILLIF EEL D+S  LPDSVVLCFSELHLTF KIL LFED   S A+I +LMKSQF
Sbjct: 61  RQIGILLIFFEELRDMSDVLPDSVVLCFSELHLTFQKILFLFEDCSRSNAKIWILMKSQF 120

[Close]

BLAST of Lag0022837 vs. NCBI nr
Match: XP_023519714.1 (U-box domain-containing protein 19-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 141.4 bits (355), Expect = 6.5e-30
Identity = 88/124 (70.97%), Postives = 93/124 (75.00%), Query Frame = 0


Query: 5   MFQNSSHSDGRILTFSAVHDQCEAIFLVTLLARSLP---QICNRQKKIFVTQKRNAREMI 64
           MFQNS  SD RILTF AVH  CEAI   TLLA  +    QICN Q K FVTQKRNARE I
Sbjct: 1   MFQNSKSSDRRILTFPAVH-PCEAISPATLLASLIDLCRQICNHQLKTFVTQKRNARETI 60

Query: 65  RQIRILLIFLEELHDIST-ALPDSVVLCFSELHLTFHKILLLFEDRCCSIARILMLMKSQ 124
           RQI ILLIF EEL D+S+  LPDSVVLCFSELHLTF KIL LFED   S A+I +LMKSQ
Sbjct: 61  RQIGILLIFFEELRDMSSDVLPDSVVLCFSELHLTFQKILFLFEDCSRSNAKIWILMKSQ 120

[Close]

BLAST of Lag0022837 vs. ExPASy Swiss-Prot
Match: O80742 (U-box domain-containing protein 19 OS=Arabidopsis thaliana OX=3702 GN=PUB19 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 7.3e-08
Identity = 47/122 (38.52%), Postives = 66/122 (54.10%), Query Frame = 0


Query: 5   MFQNSSHSDGRILTFSAVHDQCEAIFLVTL---LARSLPQICNRQKKIFVTQKRNAREMI 64
           M    + S  RILTF AV + CE+I L TL   L +   +I + + K F T KR+ +E +
Sbjct: 1   MIHTPTGSSRRILTFPAV-NPCESISLTTLVDSLLQLAGEILSFKPKHFSTNKRSVKETL 60

Query: 65  RQIRILLIFLEELHDI----STALPDSVVLCFSELHLTFHKILLLFEDRCCSIARILMLM 120
           R ++ L+IF EEL       S     SV+L  SELH+ F K+  L +D     A++ MLM
Sbjct: 61  RHVQTLVIFFEELRIQIRVGSIPAGRSVILSLSELHVIFQKLKFLLDDCTRDGAKLYMLM 120

The following BLAST results are available for this feature:

BLAST of Lag0022837 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023000658.1	9.1e-32	72.36	U-box domain-containing protein 19-like [Cucurbita maxima]	[more]
KAG7019826.1	2.0e-31	72.36	U-box domain-containing protein 19, partial [Cucurbita argyrosperma subsp. argyr...	[more]
XP_022923709.1	7.7e-31	71.54	LOW QUALITY PROTEIN: U-box domain-containing protein 19-like [Cucurbita moschata...	[more]
KAG6584229.1	7.7e-31	71.54	U-box domain-containing protein 19, partial [Cucurbita argyrosperma subsp. soror...	[more]
XP_023519714.1	6.5e-30	70.97	U-box domain-containing protein 19-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lag0022837 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O80742	7.3e-08	38.52	U-box domain-containing protein 19 OS=Arabidopsis thaliana OX=3702 GN=PUB19 PE=2...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR23315	U BOX DOMAIN-CONTAINING	coord: 14..126
None	No IPR available	PANTHER	PTHR23315:SF116	OS07G0532750 PROTEIN	coord: 14..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0022837.1	Lag0022837.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005622	intracellular anatomical structure
molecular_function	GO:0016740	transferase activity