Lag0022822 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0022822
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Reverse transcriptase
Location	chr7: 38845913 .. 38846524 (-)
RNA-Seq Expression	Lag0022822
Synteny	Lag0022822

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTCCACAAATCCAGCTGACACCGAGGTTTGGTTAAATATGTTGGAGAAATGCTTCGACGTGATGAGTTATCCTGAGGAGCGAAAAGTTAGATTAGCCACAATCCTTCTGCAGAAGGAGGCAGAGGGATGGTGGAAGTCCATTCTAGCCAAGCGTAGTGATGCATGTATGTTAGACTGACAGACTTTCAGAGGCATATTCGAGGACAAGTATTATCCCAGCACATACTGTGAGGCAAAGAGAGATGAGTTTCTGGGGCTGAAGCAAGGGTCACTTTCAGTGGCCAAGTATGAGAGAAAGTATACCAAGCTTTCACGGTATGCCGATGTGATTGTGGCATCTGAGAGTGATAGGTGTCGAAGGTTTGAAAGAGGACTACGTTTTGAGATACGTACCCTGGTTATAACTATTTCCAAGTGGACGGATTTTTCCCAATTAGTAGAGACTGCCTTACGTGTGGAGCAGAGTATAACAAAGGAAAAGTCGACAGTGGAGCCTAGTTGTGGGGCTTCAACAGCTAGCGATTTCCGAGGTCGTGAGCAGCGGAGGTTCACACCTGGCGTGAGTATTTCAGGCCGTCAAGACTTTAAGCGTCGGTCTGGTGGCTAG

mRNA sequence

ATGGGTTCCACAAATCCAGCTGACACCGAGGTTTGGTTAAATATGTTGGAGAAATGCTTCGACGTGATGAGTTATCCTGAGGAGCGAAAAGTTAGATTAGCCACAATCCTTCTGCAGAAGGAGGCAGAGGGATGGTGGAAGTCCATTCTAGCCAAGCGTAGTGATGCATTGGCCAAGTATGAGAGAAAGTATACCAAGCTTTCACGGTATGCCGATGTGATTGTGGCATCTGAGAGTGATAGGTGTCGAAGGTTTGAAAGAGGACTACGTTTTGAGATACGTACCCTGGTTATAACTATTTCCAAGTGGACGGATTTTTCCCAATTAGTAGAGACTGCCTTACGTGTGGAGCAGAGTATAACAAAGGAAAAGTCGACAGTGGAGCCTAGTTGTGGGGCTTCAACAGCTAGCGATTTCCGAGGTCGTGAGCAGCGGAGGTTCACACCTGGCGTGAGTATTTCAGGCCGTCAAGACTTTAAGCGTCGGTCTGGTGGCTAG

Coding sequence (CDS)

ATGGGTTCCACAAATCCAGCTGACACCGAGGTTTGGTTAAATATGTTGGAGAAATGCTTCGACGTGATGAGTTATCCTGAGGAGCGAAAAGTTAGATTAGCCACAATCCTTCTGCAGAAGGAGGCAGAGGGATGGTGGAAGTCCATTCTAGCCAAGCGTAGTGATGCATTGGCCAAGTATGAGAGAAAGTATACCAAGCTTTCACGGTATGCCGATGTGATTGTGGCATCTGAGAGTGATAGGTGTCGAAGGTTTGAAAGAGGACTACGTTTTGAGATACGTACCCTGGTTATAACTATTTCCAAGTGGACGGATTTTTCCCAATTAGTAGAGACTGCCTTACGTGTGGAGCAGAGTATAACAAAGGAAAAGTCGACAGTGGAGCCTAGTTGTGGGGCTTCAACAGCTAGCGATTTCCGAGGTCGTGAGCAGCGGAGGTTCACACCTGGCGTGAGTATTTCAGGCCGTCAAGACTTTAAGCGTCGGTCTGGTGGCTAG

Protein sequence

MGSTNPADTEVWLNMLEKCFDVMSYPEERKVRLATILLQKEAEGWWKSILAKRSDALAKYERKYTKLSRYADVIVASESDRCRRFERGLRFEIRTLVITISKWTDFSQLVETALRVEQSITKEKSTVEPSCGASTASDFRGREQRRFTPGVSISGRQDFKRRSGG

Homology

[Close]

BLAST of Lag0022822 vs. NCBI nr
Match: KAA0045363.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 255.0 bits (650), Expect = 4.5e-64
Identity = 138/202 (68.32%), Postives = 150/202 (74.26%), Query Frame = 0


Query: 2   GSTNPADTEVWLNMLEKCFDVMSYPEERKVRLATILLQKEAEGWWKSILAKRSDA----- 61
           GST+PAD E WLNMLEKCFDVM+ PEERKVRL T LLQKEAEGWWKSILA+RSDA     
Sbjct: 79  GSTDPADAENWLNMLEKCFDVMNCPEERKVRLGTFLLQKEAEGWWKSILARRSDARALDW 138

Query: 62  ---------------------------------LAKYERKYTKLSRYADVIVASESDRCR 121
                                            +A+YERKYT+LSRYADVI+AS+SDRCR
Sbjct: 139 QTFRGIFEDKYYPSTYCEAKRDEFLGLKQGSLSVAEYERKYTELSRYADVIIASKSDRCR 198

Query: 122 RFERGLRFEIRTLVITISKWTDFSQLVETALRVEQSITKEKSTVEPSCGASTASDFRGRE 166
           RFERGLRFEIRT V  I+KWT+FSQLVETALRVEQSITKEKSTVE S G STAS FRGRE
Sbjct: 199 RFERGLRFEIRTPVTAIAKWTNFSQLVETALRVEQSITKEKSTVELSRGTSTASGFRGRE 258

[Close]

BLAST of Lag0022822 vs. NCBI nr
Match: KAA0066849.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 254.6 bits (649), Expect = 5.8e-64
Identity = 138/202 (68.32%), Postives = 150/202 (74.26%), Query Frame = 0


Query: 2   GSTNPADTEVWLNMLEKCFDVMSYPEERKVRLATILLQKEAEGWWKSILAKRSDA----- 61
           GST+PAD E WLNMLEKCFDVM+ PEERKVRLAT LLQKEAEGWWKSILA+RSDA     
Sbjct: 117 GSTDPADAENWLNMLEKCFDVMNCPEERKVRLATFLLQKEAEGWWKSILARRSDARALDW 176

Query: 62  ---------------------------------LAKYERKYTKLSRYADVIVASESDRCR 121
                                            +A+YERKYT+LSRYADVI+ASESDRCR
Sbjct: 177 QTFRGIFEDKYYPSTYCEAKRDEFLGLKQGSLSVAEYERKYTELSRYADVIIASESDRCR 236

Query: 122 RFERGLRFEIRTLVITISKWTDFSQLVETALRVEQSITKEKSTVEPSCGASTASDFRGRE 166
           RFERGLRFEIRT V  I+KWT+FSQLVETALRVEQSIT+EKS VE S G STAS FRGRE
Sbjct: 237 RFERGLRFEIRTPVTAIAKWTNFSQLVETALRVEQSITEEKSAVELSRGTSTASGFRGRE 296

[Close]

BLAST of Lag0022822 vs. NCBI nr
Match: KAA0035455.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >KAA0046782.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK01987.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK03719.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK25877.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 254.6 bits (649), Expect = 5.8e-64
Identity = 138/202 (68.32%), Postives = 150/202 (74.26%), Query Frame = 0


Query: 2   GSTNPADTEVWLNMLEKCFDVMSYPEERKVRLATILLQKEAEGWWKSILAKRSDA----- 61
           GST+PAD E WLNMLEKCFDVM+ PEERKVRLAT LLQKEAEGWWKSILA+RSDA     
Sbjct: 117 GSTDPADAENWLNMLEKCFDVMNCPEERKVRLATFLLQKEAEGWWKSILARRSDARALDW 176

Query: 62  ---------------------------------LAKYERKYTKLSRYADVIVASESDRCR 121
                                            +A+YERKYT+LSRYADVI+ASESDRCR
Sbjct: 177 QTFRGIFEDKYYPSTYCEAKRDEFLGLKQGSLSVAEYERKYTELSRYADVIIASESDRCR 236

Query: 122 RFERGLRFEIRTLVITISKWTDFSQLVETALRVEQSITKEKSTVEPSCGASTASDFRGRE 166
           RFERGLRFEIRT V  I+KWT+FSQLVETALRVEQSIT+EKS VE S G STAS FRGRE
Sbjct: 237 RFERGLRFEIRTPVTAIAKWTNFSQLVETALRVEQSITEEKSAVELSRGTSTASGFRGRE 296

[Close]

BLAST of Lag0022822 vs. NCBI nr
Match: TYK06334.1 (putative polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 254.6 bits (649), Expect = 5.8e-64
Identity = 138/202 (68.32%), Postives = 150/202 (74.26%), Query Frame = 0


Query: 2   GSTNPADTEVWLNMLEKCFDVMSYPEERKVRLATILLQKEAEGWWKSILAKRSDA----- 61
           GST+PAD E WLNMLEKCFDVM+ PEERKVRLAT LLQKEAEGWWKSILA+RSDA     
Sbjct: 79  GSTDPADAENWLNMLEKCFDVMNCPEERKVRLATFLLQKEAEGWWKSILARRSDARALDW 138

Query: 62  ---------------------------------LAKYERKYTKLSRYADVIVASESDRCR 121
                                            +A+YERKYT+LSRYADVI+ASESDRCR
Sbjct: 139 QTFRGIFEDKYYPSTYCEAKRDEFLGLKQGSLSVAEYERKYTELSRYADVIIASESDRCR 198

Query: 122 RFERGLRFEIRTLVITISKWTDFSQLVETALRVEQSITKEKSTVEPSCGASTASDFRGRE 166
           RFERGLRFEIRT V  I+KWT+FSQLVETALRVEQSIT+EKS VE S G STAS FRGRE
Sbjct: 199 RFERGLRFEIRTPVTAIAKWTNFSQLVETALRVEQSITEEKSAVELSRGTSTASGFRGRE 258

[Close]

BLAST of Lag0022822 vs. NCBI nr
Match: TYK27507.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 254.6 bits (649), Expect = 5.8e-64
Identity = 138/202 (68.32%), Postives = 150/202 (74.26%), Query Frame = 0


Query: 2   GSTNPADTEVWLNMLEKCFDVMSYPEERKVRLATILLQKEAEGWWKSILAKRSDA----- 61
           GST+PAD E WLNMLEKCFDVM+ PEERKVRLAT LLQKEAEGWWKSILA+RSDA     
Sbjct: 79  GSTDPADAENWLNMLEKCFDVMNCPEERKVRLATFLLQKEAEGWWKSILARRSDARALDW 138

Query: 62  ---------------------------------LAKYERKYTKLSRYADVIVASESDRCR 121
                                            +A+YERKYT+LSRYADVI+ASESDRCR
Sbjct: 139 QTFRGIFEDKYYPSTYCEAKRDEFLGLKQGSLSVAEYERKYTELSRYADVIIASESDRCR 198

Query: 122 RFERGLRFEIRTLVITISKWTDFSQLVETALRVEQSITKEKSTVEPSCGASTASDFRGRE 166
           RFERGLRFEIRT V  I+KWT+FSQLVETALRVEQSIT+EKS VE S G STAS FRGRE
Sbjct: 199 RFERGLRFEIRTPVTAIAKWTNFSQLVETALRVEQSITEEKSAVELSRGTSTASGFRGRE 258

The following BLAST results are available for this feature:

BLAST of Lag0022822 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0045363.1	4.5e-64	68.32	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0066849.1	5.8e-64	68.32	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0035455.1	5.8e-64	68.32	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >KAA0046782.1...	[more]
TYK06334.1	5.8e-64	68.32	putative polyprotein [Cucumis melo var. makuwa]	[more]
TYK27507.1	5.8e-64	68.32	reverse transcriptase [Cucumis melo var. makuwa]	[more]

BLAST of Lag0022822 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34482:SF4	POLYMERASES SUPERFAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED	coord: 11..162
None	No IPR available	PANTHER	PTHR34482	DNA DAMAGE-INDUCIBLE PROTEIN 1-LIKE	coord: 11..162

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0022822.1	Lag0022822.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
molecular_function	GO:0005488	binding
molecular_function	GO:0003824	catalytic activity