Lag0022795 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0022795
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRetrotransposon gag protein
Locationchr7: 38070188 .. 38071336 (-)
RNA-Seq ExpressionLag0022795
SyntenyLag0022795
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTATGGCCGCGACAGAAGAAGAAAATCAATATTTGGTGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCAACCTTCAACATCTGTCTTTGATCGCCTCAATGTAACAACGATCAACCTAAAAGAAAGATGGACAACTTGGAGTTGAAATTTTCGATGAAGTAAACACGACGATATACTTCATAGTAGCATCCCGTCACGTATGAAGAGGAAGTTTCTATTCTCATAAATATGGAAGGTTCCTTGAAGGTGAAGCCAAATCTCATTATCCTGACCAATCCTGCAAATGAAGAATCTGATCAAGACCATGATAAAGATAAGAGCTTTTAAATGTAAAAACTCCTGATCGCAAGAGCCTAAACTGCACGATGCTCCTAGCCCACATGAGCTTAAAAGGTGAGTGAAAAAAAAAAAATCTTGAACTATGTTATGACTTGATCCCTATTCTTCAAGGGTACGTAAGCAGCTTAAAGAAAACTTAAGTTCAGTCTCTACAAAAAAAGTGTGACAAATATCGAAGCACGACAATGAAAACTGAAGAAATTCATCACTACTGGGGCAACAAAGCAAATTAAAGATGTGCACCGCTATGAATGAGATGCTACAAGTTGGATGAGTAAAAAAAAAAAGCTTTATCCCTCCAAGTTTGATGTCTTGCTCATCTCAAGTTTGGTGTTCCATTCACCTCAAGTTTTGGTTCTCCTTCTTCAAGTTTGAAAGTGGTTATCTTCACTACTGCTCCGCTGAGATTCTCCTTTATCAAGTTCGAAGGTGGTTCTCTCCGTTGTTGCTCCGCTGAGGTTCTCCTTCTCCAAGTTCGAAGGTAGTTCCCTCTAGTGTGGTGCTCTTTCCCCAAGTTTGAAGGTTTTACATTGTGGTTCCCCTTCTCCAAGTTCGAAGGTTCTATAACTCCATTTAAAAGTTGGGAGGCTTCGTCATTGTTTTGTCTCTAAGACTTTGACTTCACTCCATCTTCAAAGGTCGACAGTTGACGGCTTCGAACTCGATCCATCTTCAAAGGTTGGCGGTTGACGGCTTCGATCGAACTCGATCCATCTTCAAAGGTTGGCTGGTTGACGGCTTCGGCCTCGCTCCATCTTCAAAGGTTGGCGGTTGA

mRNA sequence

ATGAGTATGGCCGCGACAGAAGAAGAAAATCAATATTTGGTGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCAACCTTCAACATCTGTCTTTGATCGCCTCAATGTGGTTCTCTCCGTTGTTGCTCCGCTGAGGTTCTCCTTCTCCAAGTTCGAAGGTCGACAGTTGACGGCTTCGAACTCGATCCATCTTCAAAGGTTGGCGGTTGACGGCTTCGATCGAACTCGATCCATCTTCAAAGGTTGGCTGGTTGACGGCTTCGGCCTCGCTCCATCTTCAAAGGTTGGCGGTTGA

Coding sequence (CDS)

ATGAGTATGGCCGCGACAGAAGAAGAAAATCAATATTTGGTGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCAACCTTCAACATCTGTCTTTGATCGCCTCAATGTGGTTCTCTCCGTTGTTGCTCCGCTGAGGTTCTCCTTCTCCAAGTTCGAAGGTCGACAGTTGACGGCTTCGAACTCGATCCATCTTCAAAGGTTGGCGGTTGACGGCTTCGATCGAACTCGATCCATCTTCAAAGGTTGGCTGGTTGACGGCTTCGGCCTCGCTCCATCTTCAAAGGTTGGCGGTTGA

Protein sequence

MSMAATEEENQYLVSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLNVVLSVVAPLRFSFSKFEGRQLTASNSIHLQRLAVDGFDRTRSIFKGWLVDGFGLAPSSKVGG
Homology
[Close]
BLAST of Lag0022795 vs. NCBI nr
Match: KAA0032935.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK22027.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 61.2 bits (147), Expect = 6.1e-06
Identity = 32/46 (69.57%), Postives = 38/46 (82.61%), Query Frame = 0 

Query: 1   MSMAATEEENQYLVSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLNV 47
           +SMA  EEENQ  +STSTR SAF+RLS+STSKK +PSTS FDRL +
Sbjct: 145 LSMATKEEENQCQISTSTRTSAFKRLSISTSKKDRPSTSAFDRLKM 190

[Close]
BLAST of Lag0022795 vs. NCBI nr
Match: KAA0050345.1 (gag protease polyprotein [Cucumis melo var. makuwa] >TYK03559.1 gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 60.1 bits (144), Expect = 1.4e-05
Identity = 32/46 (69.57%), Postives = 37/46 (80.43%), Query Frame = 0 

Query: 1   MSMAATEEENQYLVSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLNV 47
           +SMA  EEENQY  ST TR SAF+RLS+STSKK +PSTS FDRL +
Sbjct: 92  LSMATKEEENQYPTSTYTRTSAFKRLSISTSKKDRPSTSSFDRLKM 137

[Close]
BLAST of Lag0022795 vs. NCBI nr
Match: KAA0062746.1 (Retrotransposon gag protein [Cucumis melo var. makuwa] >TYK22545.1 Retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 58.5 bits (140), Expect = 4.0e-05
Identity = 31/46 (67.39%), Postives = 37/46 (80.43%), Query Frame = 0 

Query: 1   MSMAATEEENQYLVSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLNV 47
           +SMA  EEENQ L STST+ SAF+RLS+STSKK +PS S FDRL +
Sbjct: 92  LSMATKEEENQCLTSTSTQTSAFKRLSISTSKKDRPSISAFDRLKM 137

[Close]
BLAST of Lag0022795 vs. NCBI nr
Match: TYJ99972.1 (hypothetical protein E5676_scaffold360G00130 [Cucumis melo var. makuwa])

HSP 1 Score: 58.2 bits (139), Expect = 5.2e-05
Identity = 32/46 (69.57%), Postives = 36/46 (78.26%), Query Frame = 0 

Query: 1   MSMAATEEENQYLVSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLNV 47
           +SMA  EEENQ    TSTR SAF+RLS+ST KK QPSTSVFDRL +
Sbjct: 84  LSMATKEEENQCPTFTSTRTSAFKRLSISTLKKDQPSTSVFDRLKM 129

[Close]
BLAST of Lag0022795 vs. NCBI nr
Match: KAA0051327.1 (Retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 57.8 bits (138), Expect = 6.8e-05
Identity = 30/46 (65.22%), Postives = 37/46 (80.43%), Query Frame = 0 

Query: 1   MSMAATEEENQYLVSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLNV 47
           +SMA  EEENQ   STSTR SAF+RL++STSKK +PSTS+FD L +
Sbjct: 92  LSMATKEEENQCPTSTSTRTSAFKRLTISTSKKDRPSTSIFDHLKM 137

The following BLAST results are available for this feature:
BLAST of Lag0022795 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0032935.16.1e-0669.57retrotransposon gag protein [Cucumis melo var. makuwa] >TYK22027.1 retrotranspos... [more]
KAA0050345.11.4e-0569.57gag protease polyprotein [Cucumis melo var. makuwa] >TYK03559.1 gag protease pol... [more]
KAA0062746.14.0e-0567.39Retrotransposon gag protein [Cucumis melo var. makuwa] >TYK22545.1 Retrotranspos... [more]
TYJ99972.15.2e-0569.57hypothetical protein E5676_scaffold360G00130 [Cucumis melo var. makuwa][more]
KAA0051327.16.8e-0565.22Retrotransposon gag protein [Cucumis melo var. makuwa][more]
BLAST of Lag0022795 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0022795.1Lag0022795.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0008233 peptidase activity