Lag0022757 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0022757
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr7: 37295028 .. 37295540 (-)
RNA-Seq ExpressionLag0022757
SyntenyLag0022757
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCTCTCTTCTTCAAAGATCAGTACTTCTGCAGATATTACGCAACACTCCAAGATTATCAACCCGGGAAACAAGATCAATACCGTCAAGCTTGACGAAGAAAATTTCCTTCTATGGAAATTACAAGTTCTCACTGTATTATGCGAGCACAGGTTGACGAAATACATCGAGGAAGACGCTGAAATTCCGGACAACTTTCTTCCCTCAAATGATACTTCTTCTTCTGTGAAATTACCAAATCCAGCATATGATCTTTGGGTTCGTCAAGATAGCTTGATCACAGCTTGGCTTTTTGGCTCTATGTCGAATTCCCTTATCTCCGAAATGCTTGACTGTGACAAAGAGTGTGAGGTCTGGAAGATTCTTAACAATCATTTCTCCTCAAGGAATATGGCAAGGATGATGGATTTAAAGTCCAAATTGGAGACGTGCAAGAAAGGAAATCTCAAATTGGAGGAGTATTTTCAGAGAGTCAAGAATCTTGTTGATTCCATGGCAGTCGCCGAATAA

mRNA sequence

ATGGATCTCTCTTCTTCAAAGATCAGTACTTCTGCAGATATTACGCAACACTCCAAGATTATCAACCCGGGAAACAAGATCAATACCGTCAAGCTTGACGAAGAAAATTTCCTTCTATGGAAATTACAAGTTCTCACTGTATTATGCGAGCACAGGTTGACGAAATACATCGAGGAAGACGCTGAAATTCCGGACAACTTTCTTCCCTCAAATGATACTTCTTCTTCTGTGAAATTACCAAATCCAGCATATGATCTTTGGGTTCGTCAAGATAGCTTGATCACAGCTTGGCTTTTTGGCTCTATGTCGAATTCCCTTATCTCCGAAATGCTTGACTGTGACAAAGAGTGTGAGGTCTGGAAGATTCTTAACAATCATTTCTCCTCAAGGAATATGGCAAGGATGATGGATTTAAAGTCCAAATTGGAGACGTGCAAGAAAGGAAATCTCAAATTGGAGGAGTATTTTCAGAGAGTCAAGAATCTTGTTGATTCCATGGCAGTCGCCGAATAA

Coding sequence (CDS)

ATGGATCTCTCTTCTTCAAAGATCAGTACTTCTGCAGATATTACGCAACACTCCAAGATTATCAACCCGGGAAACAAGATCAATACCGTCAAGCTTGACGAAGAAAATTTCCTTCTATGGAAATTACAAGTTCTCACTGTATTATGCGAGCACAGGTTGACGAAATACATCGAGGAAGACGCTGAAATTCCGGACAACTTTCTTCCCTCAAATGATACTTCTTCTTCTGTGAAATTACCAAATCCAGCATATGATCTTTGGGTTCGTCAAGATAGCTTGATCACAGCTTGGCTTTTTGGCTCTATGTCGAATTCCCTTATCTCCGAAATGCTTGACTGTGACAAAGAGTGTGAGGTCTGGAAGATTCTTAACAATCATTTCTCCTCAAGGAATATGGCAAGGATGATGGATTTAAAGTCCAAATTGGAGACGTGCAAGAAAGGAAATCTCAAATTGGAGGAGTATTTTCAGAGAGTCAAGAATCTTGTTGATTCCATGGCAGTCGCCGAATAA

Protein sequence

MDLSSSKISTSADITQHSKIINPGNKINTVKLDEENFLLWKLQVLTVLCEHRLTKYIEEDAEIPDNFLPSNDTSSSVKLPNPAYDLWVRQDSLITAWLFGSMSNSLISEMLDCDKECEVWKILNNHFSSRNMARMMDLKSKLETCKKGNLKLEEYFQRVKNLVDSMAVAE
Homology
BLAST of Lag0022757 vs. NCBI nr
Match: XP_022154487.1 (uncharacterized protein LOC111021757 [Momordica charantia])

HSP 1 Score: 164.1 bits (414), Expect = 1.1e-36
Identity = 82/169 (48.52%), Postives = 119/169 (70.41%), Query Frame = 0

Query: 3   LSSSKISTSADITQHSKIINPGNKINTVKLDEENFLLWKLQVLTVLCEHRLTKYIEEDAE 62
           LSS + S +A I Q SK INPG+K++ V+L+++N LLWK Q+ T L  + L  YI+ + +
Sbjct: 4   LSSIRNSDAARIIQASKTINPGSKVSIVRLNDDNXLLWKFQIRTALQGNGLESYIDSNED 63

Query: 63  IPDNFLPS--NDTSSSVKLPNPAYDLWVRQDSLITAWLFGSMSNSLISEMLDCDKECEVW 122
            P  F+ +  +++SSS    NPAY  W++QD LI+AWL GSM+  ++S+MLDC    E+W
Sbjct: 64  TPAQFVQTTEDESSSSSLQQNPAYFEWIKQDKLISAWLLGSMNEDILSQMLDCKSAREIW 123

Query: 123 KILNNHFSSRNMARMMDLKSKLETCKKGNLKLEEYFQRVKNLVDSMAVA 170
            +L   F+SR +AR+M LK KLE  KKGNL L++YF ++KNLVDS+A+A
Sbjct: 124 TVLECMFASRTLARVMQLKLKLENFKKGNLSLKDYFLKIKNLVDSLAIA 172

BLAST of Lag0022757 vs. NCBI nr
Match: KAA0048297.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 141.4 bits (355), Expect = 7.4e-30
Identity = 67/152 (44.08%), Postives = 102/152 (67.11%), Query Frame = 0

Query: 18  SKIINPGNKINTVKLDEENFLLWKLQVLTVLCEHRLTKYIEEDAEIPDNFLPSNDTS--S 77
           ++I   GNKI+ VKL+++ FLLWK Q+LT L  + L  ++E ++E P  +L S ++S  S
Sbjct: 20  NQIFGSGNKISLVKLNDDTFLLWKFQILTALEAYDLENFLESESEPPSKYLISTESSSAS 79

Query: 78  SVKLPNPAYDLWVRQDSLITAWLFGSMSNSLISEMLDCDKECEVWKILNNHFSSRNMARM 137
           +   PNPAY +W RQD LI++WL GSMS  ++++ML C    E+W+ L   FSSR +A+ 
Sbjct: 80  ATGTPNPAYKVWKRQDRLISSWLLGSMSEEILNQMLHCKSAKEIWETLQGIFSSRYLAQA 139

Query: 138 MDLKSKLETCKKGNLKLEEYFQRVKNLVDSMA 168
           M  K+KL   KKG++ L+EYF ++   VD++A
Sbjct: 140 MQFKNKLHNIKKGSMPLKEYFLKILQCVDALA 171

BLAST of Lag0022757 vs. NCBI nr
Match: TYK10642.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 141.4 bits (355), Expect = 7.4e-30
Identity = 67/152 (44.08%), Postives = 102/152 (67.11%), Query Frame = 0

Query: 18  SKIINPGNKINTVKLDEENFLLWKLQVLTVLCEHRLTKYIEEDAEIPDNFLPSNDTS--S 77
           ++I   GNKI+ VKL+++ FLLWK Q+LT L  + L  ++E ++E P  +L S ++S  S
Sbjct: 20  NQIFGSGNKISLVKLNDDTFLLWKFQILTALEAYDLENFLESESEPPSKYLISTESSSAS 79

Query: 78  SVKLPNPAYDLWVRQDSLITAWLFGSMSNSLISEMLDCDKECEVWKILNNHFSSRNMARM 137
           +   PNPAY +W RQD LI++WL GSMS  ++++ML C    E+W+ L   FSSR +A+ 
Sbjct: 80  ATGTPNPAYKVWKRQDRLISSWLLGSMSEEILNQMLHCKSAKEIWETLQGIFSSRYLAQA 139

Query: 138 MDLKSKLETCKKGNLKLEEYFQRVKNLVDSMA 168
           M  K+KL   KKG++ L+EYF ++   VD++A
Sbjct: 140 MQFKNKLHNIKKGSMPLKEYFLKILQCVDALA 171

BLAST of Lag0022757 vs. NCBI nr
Match: XP_022156747.1 (uncharacterized protein LOC111023586 [Momordica charantia])

HSP 1 Score: 139.0 bits (349), Expect = 3.7e-29
Identity = 67/131 (51.15%), Postives = 91/131 (69.47%), Query Frame = 0

Query: 41  KLQVLTVLCEHRLTKYIEEDAEIPDNFLPSND--TSSSVKLPNPAYDLWVRQDSLITAWL 100
           K QVLT +  H L +YI+ D E P  F+ + D  TSS+ + PNP Y  W++QD LI+ WL
Sbjct: 19  KFQVLTAIQGHGLEQYIDSDIEPPSRFIQNGDGVTSSTTQQPNPEYFHWIKQDKLISLWL 78

Query: 101 FGSMSNSLISEMLDCDKECEVWKILNNHFSSRNMARMMDLKSKLETCKKGNLKLEEYFQR 160
            GSMS  ++S+MLDC    E+W +L   F+SRN+AR+M LKSKLE  KKG++ L+ YF +
Sbjct: 79  LGSMSEEILSQMLDCRMVKEIWTLLECTFASRNLARVMQLKSKLENMKKGSMNLKNYFLK 138

Query: 161 VKNLVDSMAVA 170
           +KNLVDS+A A
Sbjct: 139 IKNLVDSLATA 149

BLAST of Lag0022757 vs. NCBI nr
Match: KAA0067213.1 (keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 136.3 bits (342), Expect = 2.4e-28
Identity = 65/152 (42.76%), Postives = 100/152 (65.79%), Query Frame = 0

Query: 18  SKIINPGNKINTVKLDEENFLLWKLQVLTVLCEHRLTKYIEEDAEIPDNFLPSNDTS--S 77
           ++I    NKI+ VKL ++NFLLWK Q+LT L  + L  ++E ++E P  +L S  +S  S
Sbjct: 20  NQIFGSSNKISLVKLSDDNFLLWKFQILTALEAYDLENFLESESEPPSKYLISTGSSSAS 79

Query: 78  SVKLPNPAYDLWVRQDSLITAWLFGSMSNSLISEMLDCDKECEVWKILNNHFSSRNMARM 137
           + + PNP Y +W RQD LI++WL GSMS  ++++ML C    E+W  L   FSSR +A+ 
Sbjct: 80  ATRTPNPTYKVWKRQDRLISSWLLGSMSEEILNQMLHCKSAKEIWGTLQGIFSSRYLAQA 139

Query: 138 MDLKSKLETCKKGNLKLEEYFQRVKNLVDSMA 168
           M  K+KL   KK ++ L+EYF ++++ VD++A
Sbjct: 140 MKFKNKLHNIKKESMPLKEYFLKIQHRVDALA 171

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022154487.11.1e-3648.52uncharacterized protein LOC111021757 [Momordica charantia][more]
KAA0048297.17.4e-3044.08Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
TYK10642.17.4e-3044.08Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
XP_022156747.13.7e-2951.15uncharacterized protein LOC111023586 [Momordica charantia][more]
KAA0067213.12.4e-2842.76keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 87..169
e-value: 5.1E-9
score: 36.0
NoneNo IPR availablePANTHERPTHR34222:SF48SUBFAMILY NOT NAMEDcoord: 26..169
NoneNo IPR availablePANTHERPTHR34222FAMILY NOT NAMEDcoord: 26..169

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0022757.1Lag0022757.1mRNA