Lag0022708 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0022708
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionDNA-directed RNA polymerase V subunit 5C-like
Locationchr7: 36074220 .. 36074528 (-)
RNA-Seq ExpressionLag0022708
SyntenyLag0022708
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGATGCACTAAAACTGGTGGTCAACAAGGGAGTTCAGTGGAAAGAATCCCAAACGAAGGTGAAGTCTCTAGTGCCAAGCGACTTAAAGCCAAAATCGGCAGTGTGGCTTCACTTTCTCAAAAACCGACTGATGCCAACCATCCATGATAGCACCATCTCAATAGAGAGAGTTATGCTCTTCTACTGTATTATGAAAGGGTTGGAGATCAACATCGGGAGTATTATCAGGGAGAAGATTCTTGCATGTGGAAGGAAAAGAGCAAGAAAGCTTTTCTTTGGATCACTGATTACCCAGTTTTGTTAG

mRNA sequence

ATGAAAGATGCACTAAAACTGGTGGTCAACAAGGGAGTTCAGTGGAAAGAATCCCAAACGAAGGTGAAGTCTCTAGTGCCAAGCGACTTAAAGCCAAAATCGGCAGTGTGGCTTCACTTTCTCAAAAACCGACTGATGCCAACCATCCATGATAGCACCATCTCAATAGAGAGAGTTATGCTCTTCTACTGTATTATGAAAGGGTTGGAGATCAACATCGGGAGTATTATCAGGGAGAAGATTCTTGCATGTGGAAGGAAAAGAGCAAGAAAGCTTTTCTTTGGATCACTGATTACCCAGTTTTGTTAG

Coding sequence (CDS)

ATGAAAGATGCACTAAAACTGGTGGTCAACAAGGGAGTTCAGTGGAAAGAATCCCAAACGAAGGTGAAGTCTCTAGTGCCAAGCGACTTAAAGCCAAAATCGGCAGTGTGGCTTCACTTTCTCAAAAACCGACTGATGCCAACCATCCATGATAGCACCATCTCAATAGAGAGAGTTATGCTCTTCTACTGTATTATGAAAGGGTTGGAGATCAACATCGGGAGTATTATCAGGGAGAAGATTCTTGCATGTGGAAGGAAAAGAGCAAGAAAGCTTTTCTTTGGATCACTGATTACCCAGTTTTGTTAG

Protein sequence

MKDALKLVVNKGVQWKESQTKVKSLVPSDLKPKSAVWLHFLKNRLMPTIHDSTISIERVMLFYCIMKGLEINIGSIIREKILACGRKRARKLFFGSLITQFC
Homology
BLAST of Lag0022708 vs. NCBI nr
Match: PON44141.1 (hypothetical protein PanWU01x14_268850 [Parasponia andersonii])

HSP 1 Score: 87.8 bits (216), Expect = 5.8e-14
Identity = 42/98 (42.86%), Postives = 59/98 (60.20%), Query Frame = 0

Query: 5   LKLVVNKGVQWKESQTKVKSLVPSDLKPKSAVWLHFLKNRLMPTIHDSTISIERVMLFYC 64
           L+ V   GV+W  S       + S L P + VW HFLK+ L+PT H   +S ERV+L Y 
Sbjct: 93  LETVAIAGVEWNVSFQGAYIYLRSSLNPHAKVWYHFLKSHLLPTTHGKIVSKERVLLLYS 152

Query: 65  IMKGLEINIGSIIREKILACGRKRARKLFFGSLITQFC 103
           ++ G  IN+G +I  +I AC  +++R LFF SLIT+ C
Sbjct: 153 MLTGKSINVGRMIHREICACAARKSRALFFPSLITRMC 190

BLAST of Lag0022708 vs. NCBI nr
Match: PON62892.1 (hypothetical protein PanWU01x14_135680 [Parasponia andersonii])

HSP 1 Score: 87.4 bits (215), Expect = 7.6e-14
Identity = 42/98 (42.86%), Postives = 59/98 (60.20%), Query Frame = 0

Query: 5   LKLVVNKGVQWKESQTKVKSLVPSDLKPKSAVWLHFLKNRLMPTIHDSTISIERVMLFYC 64
           L+ V   G +W  S     + + S L P + VW HFLK+RL+PT H  T+S ERV+L Y 
Sbjct: 52  LETVAIAGAEWNVSSQGAYTCLRSSLNPPAKVWYHFLKSRLLPTTHGKTVSKERVLLLYS 111

Query: 65  IMKGLEINIGSIIREKILACGRKRARKLFFGSLITQFC 103
           ++ G  IN+G II  +I A   +++  LFF SLIT+ C
Sbjct: 112 MLTGKSINVGQIIHREICAYAARKSGALFFPSLITRMC 149

BLAST of Lag0022708 vs. NCBI nr
Match: PON70375.1 (hypothetical protein PanWU01x14_080440 [Parasponia andersonii])

HSP 1 Score: 86.3 bits (212), Expect = 1.7e-13
Identity = 41/98 (41.84%), Postives = 57/98 (58.16%), Query Frame = 0

Query: 5   LKLVVNKGVQWKESQTKVKSLVPSDLKPKSAVWLHFLKNRLMPTIHDSTISIERVMLFYC 64
           L+ V   G +W  S     + + S L P + VW HFLK+RL+PT H  T+S E V L Y 
Sbjct: 166 LETVAIVGAEWNVSSQGAYTCLRSSLNPPAKVWYHFLKSRLLPTTHGKTVSKEHVSLLYS 225

Query: 65  IMKGLEINIGSIIREKILACGRKRARKLFFGSLITQFC 103
           ++ G  IN+G +I  +I AC  +++  LFF SLIT  C
Sbjct: 226 MLTGKSINVGRMIHREICACAARKSGALFFPSLITSMC 263

BLAST of Lag0022708 vs. NCBI nr
Match: PON50458.1 (hypothetical protein PanWU01x14_223230, partial [Parasponia andersonii])

HSP 1 Score: 85.9 bits (211), Expect = 2.2e-13
Identity = 40/98 (40.82%), Postives = 59/98 (60.20%), Query Frame = 0

Query: 5   LKLVVNKGVQWKESQTKVKSLVPSDLKPKSAVWLHFLKNRLMPTIHDSTISIERVMLFYC 64
           L+ V   G +W  S   V + + S L P + +W HFLK+RL+PT H   +S ERV+L Y 
Sbjct: 62  LETVAIAGAEWNVSSQGVYTCLRSSLNPPAKIWYHFLKSRLLPTTHGKIVSKERVLLLYS 121

Query: 65  IMKGLEINIGSIIREKILACGRKRARKLFFGSLITQFC 103
           ++ G  IN+G +I  +I AC  +++  LFF SLI + C
Sbjct: 122 MLTGKSINMGRMIHREICACAARKSGALFFPSLIIRMC 159

BLAST of Lag0022708 vs. NCBI nr
Match: XP_024971944.1 (uncharacterized protein LOC112510826 [Cynara cardunculus var. scolymus])

HSP 1 Score: 85.5 bits (210), Expect = 2.9e-13
Identity = 37/88 (42.05%), Postives = 61/88 (69.32%), Query Frame = 0

Query: 12  GVQW-KESQTKVKSLVPSDLKPKSAVWLHFLKNRLMPTIHDSTISIERVMLFYCIMKGLE 71
           G++W   S   +++   S+LKP + VW++F++  L PT HDS+IS+E+++L YC++ G  
Sbjct: 314 GIRWDAHSNYMLRTYRASNLKPNANVWINFIRYSLNPTTHDSSISVEKIILLYCVVTGRT 373

Query: 72  INIGSIIREKILACGRKRARKLFFGSLI 99
           IN+G ++ + IL C ++R  KLFF SLI
Sbjct: 374 INVGKVVEKAILYCSKRRQGKLFFPSLI 401

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PON44141.15.8e-1442.86hypothetical protein PanWU01x14_268850 [Parasponia andersonii][more]
PON62892.17.6e-1442.86hypothetical protein PanWU01x14_135680 [Parasponia andersonii][more]
PON70375.11.7e-1341.84hypothetical protein PanWU01x14_080440 [Parasponia andersonii][more]
PON50458.12.2e-1340.82hypothetical protein PanWU01x14_223230, partial [Parasponia andersonii][more]
XP_024971944.12.9e-1342.05uncharacterized protein LOC112510826 [Cynara cardunculus var. scolymus][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0022708.1Lag0022708.1mRNA