Lag0022285 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0022285
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	60S ribosomal protein L13
Location	chr7: 22993565 .. 22995222 (+)
RNA-Seq Expression	Lag0022285
Synteny	Lag0022285

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCACAATTTTATCCCTAGTGGGCACTTTAGAAAGCACTGGCAAAGTTATGTTAGAACTTGGTTCAACCAACCTGTCATGGAAACAAGGAGAAGGAATGGTGAGTGCCAGTTCCCAATTTCTGTTTTTGGGGTTTCTACCATTTCATCCTTAGTTAAATGTTGTTTTGTATTGTTCTAATTGTTTTTTCTTGTGTATCGTCACCAGTTCATCAAGAAAAGGCTGTGAAAAATTTACCTCGGTCTACTGCTGGACCACCTCGTCCTATTGTTCATGGACAAACATTGAAGTATAACATGAAAGTGAGGGCTGGTAGAGGCTTCTCTTTTCAAGAGTTGAAGGTGGAATTATTTTTTTGGCTTTTGGAGTTTTTGGATGACGACATGCATAATAACTCGTAAAATCTCATATATAGCGGCCCATTCTGGATTGTTCTAATGCAGGGATTTTGGACTTCTCAAGACATTGAAAGCAGATGACTTGGCTTTTAACTTGGGACCTCGAACTCATTACAATTGGAAAAGAGGAGAAAAAAAATTAGTGAAACCTTTGATATTGGTGATTCTGTGTTAGCTCATCCTTGCTTTAATGAGTGTTGAGTGGCTGGAAAATTTGTATAAGTTGTTGGCTTTGTCACATCTAATGAATCAACTTGTTTTTCACCTGAATGTTGGAATTTAGTTTCAATGAACTAAAGCTTTTCTTCTGAAAGATGAACCCTAGTGTATCTATATTAATTGTAAAACTAATGAGTTCTTCTTCTTTGTTCTTCATCTTTTCTCTTGGAACTTGCTCTCTGTTGCTTTGGATGTTGTTCTTATTATGTATCTAGTGTTTATTAGTTTTCCATTCAATTATTTTTCTATTACGATGATGAGATGTGATGATACAATTATCTTTGCATGTGGTACGCTAGCGAATACTGTTTGTGTACTTTTTGATTGTTTCATTTTGAATTTTGATCTTCGTTTATACTGAATGAAAATAGAGATTTCCAAGAATTTTTTGTTTGTGTGTATTGTGGATGGTACCAATGTCTTTTGGTTTCTGGTTTTATTGTTAGTTTTATGCCAAACGCAAAAGAAGTACTAGAAGGGAAACTTGTGATTTTTTCTCACTTAGGCATTAATGGATCAATTAGTCATAGTATGCGCTATAAGGTTCCTATAAACGCATGAGGTTGCGACCGCAACAGCCTTGATAACATTCTCCTTAATACTTCTCTTTTTACTCTCATCGCATGTTTTACTTTATGAAATATTTATTCTTCAATTCCATCAACTCTCTTATTTAGTTCTTTATATAATATCACACGTTTTTTAGTTAAGATCAGTGAAAATTATTAAAACTTTGCAAATAACCTTTCCTTGTGGATTCGACCCTAGACTCACTAGGTATAACTTCATTTTTTTTCAATTTATACTTCGATTGATATACATCTACGACAATTTTGCATTAGTTTGTTAAGCATACTGACAACCGACCAAGTTTTTGGCATCGTTGCTGGGGAAAGGTGACCAAATTTGTAATAATCTTTTTGATCTGACACTCCGTTTTATATTATTTACCGTGTTCCCTGTTGAGTAATTTTTCTCCAGGCAACTGGAGATTGCATGCGTGTTGCTCGCCAGATCGATTTCGAAGTTGATCCTTAA

mRNA sequence

ATGAAGCACAATTTTATCCCTAGTGGGCACTTTAGAAAGCACTGGCAAAGTTATGTTAGAACTTGGTTCAACCAACCTGTCATGGAAACAAGGAGAAGGAATGTTCATCAAGAAAAGGCTGTGAAAAATTTACCTCGGTCTACTGCTGGACCACCTCGTCCTATTGTTCATGGACAAACATTGAAGTATAACATGAAAGTGAGGGCTGGTAGAGGCTTCTCTTTTCAAGAGTTGAAGGCAACTGGAGATTGCATGCGTGTTGCTCGCCAGATCGATTTCGAAGTTGATCCTTAA

Coding sequence (CDS)

ATGAAGCACAATTTTATCCCTAGTGGGCACTTTAGAAAGCACTGGCAAAGTTATGTTAGAACTTGGTTCAACCAACCTGTCATGGAAACAAGGAGAAGGAATGTTCATCAAGAAAAGGCTGTGAAAAATTTACCTCGGTCTACTGCTGGACCACCTCGTCCTATTGTTCATGGACAAACATTGAAGTATAACATGAAAGTGAGGGCTGGTAGAGGCTTCTCTTTTCAAGAGTTGAAGGCAACTGGAGATTGCATGCGTGTTGCTCGCCAGATCGATTTCGAAGTTGATCCTTAA

Protein sequence

MKHNFIPSGHFRKHWQSYVRTWFNQPVMETRRRNVHQEKAVKNLPRSTAGPPRPIVHGQTLKYNMKVRAGRGFSFQELKATGDCMRVARQIDFEVDP

Homology

[Close]

BLAST of Lag0022285 vs. NCBI nr
Match: XP_038878048.1 (60S ribosomal protein L13-3 [Benincasa hispida] >XP_038878049.1 60S ribosomal protein L13-3 [Benincasa hispida])

HSP 1 Score: 152.5 bits (384), Expect = 1.8e-33
Identity = 74/97 (76.29%), Postives = 79/97 (81.44%), Query Frame = 0


Query: 1  MKH-NFIPSGHFRKHWQSYVRTWFNQPVMETRRRNVHQEKAVKNLPRSTAGPPRPIVHGQ 60
          MKH N IPSGHFRKHWQ+YVRTWFNQP  +TRRRN  QEKAVKN PR TAGP RPIVHGQ
Sbjct: 1  MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60

Query: 61 TLKYNMKVRAGRGFSFQELKATGDCMRVARQIDFEVD 97
          TLKYNMKVRAGRGFS +ELKA G   ++AR I   VD
Sbjct: 61 TLKYNMKVRAGRGFSLEELKAAGIPKKLARTIGIAVD 97

[Close]

BLAST of Lag0022285 vs. NCBI nr
Match: XP_022969755.1 (60S ribosomal protein L13-3-like [Cucurbita maxima])

HSP 1 Score: 150.6 bits (379), Expect = 7.0e-33
Identity = 74/97 (76.29%), Postives = 78/97 (80.41%), Query Frame = 0


Query: 1  MKH-NFIPSGHFRKHWQSYVRTWFNQPVMETRRRNVHQEKAVKNLPRSTAGPPRPIVHGQ 60
          MKH N IPSGHFRKHWQ+YVRTWFNQP  +TRRRNV QEKAVKN PR TAGP RPIVHGQ
Sbjct: 1  MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNVRQEKAVKNFPRPTAGPLRPIVHGQ 60

Query: 61 TLKYNMKVRAGRGFSFQELKATGDCMRVARQIDFEVD 97
          TLKYNMKVRAGRGFS +ELKA G   + A  I   VD
Sbjct: 61 TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVD 97

[Close]

BLAST of Lag0022285 vs. NCBI nr
Match: XP_022923040.1 (60S ribosomal protein L13-1 [Cucurbita moschata] >XP_022923041.1 60S ribosomal protein L13-1 [Cucurbita moschata])

HSP 1 Score: 150.2 bits (378), Expect = 9.1e-33
Identity = 73/97 (75.26%), Postives = 78/97 (80.41%), Query Frame = 0


Query: 1  MKH-NFIPSGHFRKHWQSYVRTWFNQPVMETRRRNVHQEKAVKNLPRSTAGPPRPIVHGQ 60
          MKH N IPSGHFRKHWQ+YVRTWFNQP  +TRRRN  QEKAVKN PR TAGP RPIVHGQ
Sbjct: 1  MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60

Query: 61 TLKYNMKVRAGRGFSFQELKATGDCMRVARQIDFEVD 97
          TLKYNMKVRAGRGFS +ELKA G   ++A  I   VD
Sbjct: 61 TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGISVD 97

[Close]

BLAST of Lag0022285 vs. NCBI nr
Match: XP_022990054.1 (60S ribosomal protein L13-1-like [Cucurbita maxima] >XP_022990133.1 60S ribosomal protein L13-1-like [Cucurbita maxima])

HSP 1 Score: 149.8 bits (377), Expect = 1.2e-32
Identity = 73/97 (75.26%), Postives = 78/97 (80.41%), Query Frame = 0


Query: 1  MKH-NFIPSGHFRKHWQSYVRTWFNQPVMETRRRNVHQEKAVKNLPRSTAGPPRPIVHGQ 60
          MKH N IPSGHFRKHWQ+YVRTWFNQP  +TRRRN  QEKAVKN PR TAGP RPIVHGQ
Sbjct: 1  MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60

Query: 61 TLKYNMKVRAGRGFSFQELKATGDCMRVARQIDFEVD 97
          TLKYNMKVRAGRGFS +ELKA G   ++A  I   VD
Sbjct: 61 TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVD 97

[Close]

BLAST of Lag0022285 vs. NCBI nr
Match: XP_022141234.1 (60S ribosomal protein L13-1 [Momordica charantia])

HSP 1 Score: 149.8 bits (377), Expect = 1.2e-32
Identity = 73/97 (75.26%), Postives = 78/97 (80.41%), Query Frame = 0


Query: 1  MKH-NFIPSGHFRKHWQSYVRTWFNQPVMETRRRNVHQEKAVKNLPRSTAGPPRPIVHGQ 60
          MKH N IPSGHFRKHWQ+YVRTWFNQP  +TRRRN  QEKAVKN PR TAGP RPIVHGQ
Sbjct: 1  MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60

Query: 61 TLKYNMKVRAGRGFSFQELKATGDCMRVARQIDFEVD 97
          TLKYNMKVRAGRGFS +ELKA G   ++A  I   VD
Sbjct: 61 TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVD 97

[Close]

BLAST of Lag0022285 vs. ExPASy Swiss-Prot
Match: P41129 (60S ribosomal protein L13-2 OS=Brassica napus OX=3708 PE=2 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 2.0e-30
Identity = 62/97 (63.92%), Postives = 75/97 (77.32%), Query Frame = 0


Query: 1  MKH-NFIPSGHFRKHWQSYVRTWFNQPVMETRRRNVHQEKAVKNLPRSTAGPPRPIVHGQ 60
          MKH N IP+GHF+KHWQ+YV+TWFNQP  +TRRR   Q+KAVK  PR TAGP RP+VHGQ
Sbjct: 1  MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTAGPLRPVVHGQ 60

Query: 61 TLKYNMKVRAGRGFSFQELKATGDCMRVARQIDFEVD 97
          TLKYNMKVR G+GF+ +ELKA G   ++A  I   +D
Sbjct: 61 TLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGISLD 97

[Close]

BLAST of Lag0022285 vs. ExPASy Swiss-Prot
Match: Q9FF90 (60S ribosomal protein L13-3 OS=Arabidopsis thaliana OX=3702 GN=RPL13D PE=1 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 2.0e-30
Identity = 63/97 (64.95%), Postives = 74/97 (76.29%), Query Frame = 0


Query: 1  MKH-NFIPSGHFRKHWQSYVRTWFNQPVMETRRRNVHQEKAVKNLPRSTAGPPRPIVHGQ 60
          MKH N IPS HFRKHWQ+YV+TWFNQP  +TRRR   Q+KAVK  PR T+GP RP+VHGQ
Sbjct: 1  MKHNNVIPSSHFRKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTSGPLRPVVHGQ 60

Query: 61 TLKYNMKVRAGRGFSFQELKATGDCMRVARQIDFEVD 97
          TLKYNMKVRAG+GF+ +ELK  G   ++A  I   VD
Sbjct: 61 TLKYNMKVRAGKGFTLEELKVAGIPKKLAPTIGISVD 97

[Close]

BLAST of Lag0022285 vs. ExPASy Swiss-Prot
Match: P41127 (60S ribosomal protein L13-1 OS=Arabidopsis thaliana OX=3702 GN=RPL13B PE=1 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 2.6e-30
Identity = 62/97 (63.92%), Postives = 75/97 (77.32%), Query Frame = 0


Query: 1  MKH-NFIPSGHFRKHWQSYVRTWFNQPVMETRRRNVHQEKAVKNLPRSTAGPPRPIVHGQ 60
          MKH N IP+GHF+KHWQ+YV+TWFNQP  +TRRR   Q+KAVK  PR T+GP RP+VHGQ
Sbjct: 1  MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQ 60

Query: 61 TLKYNMKVRAGRGFSFQELKATGDCMRVARQIDFEVD 97
          TLKYNMKVR G+GF+ +ELKA G   ++A  I   VD
Sbjct: 61 TLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVD 97

[Close]

BLAST of Lag0022285 vs. ExPASy Swiss-Prot
Match: P41128 (60S ribosomal protein L13-1 OS=Brassica napus OX=3708 PE=2 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 2.6e-30
Identity = 62/97 (63.92%), Postives = 75/97 (77.32%), Query Frame = 0


Query: 1  MKH-NFIPSGHFRKHWQSYVRTWFNQPVMETRRRNVHQEKAVKNLPRSTAGPPRPIVHGQ 60
          MKH N IP+GHF+KHWQ+YV+TWFNQP  +TRRR   Q+KAVK  PR TAGP RP+VHGQ
Sbjct: 1  MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTAGPLRPVVHGQ 60

Query: 61 TLKYNMKVRAGRGFSFQELKATGDCMRVARQIDFEVD 97
          TLKYNMKVR G+GF+ +ELK+ G   ++A  I   VD
Sbjct: 61 TLKYNMKVRTGKGFTLEELKSAGIPKKLAPTIGIAVD 97

[Close]

BLAST of Lag0022285 vs. ExPASy Swiss-Prot
Match: P49627 (60S ribosomal protein L13 OS=Nicotiana tabacum OX=4097 GN=RPL13 PE=2 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 7.0e-28
Identity = 59/89 (66.29%), Postives = 69/89 (77.53%), Query Frame = 0


Query: 8  SGHFRKHWQSYVRTWFNQPVMETRRRNVHQEKAVKNLPRSTAGPPRPIVHGQTLKYNMKV 67
          +GHF+KHWQ+YV+TWFNQP  +TRRR   Q+KAVK  PR TAG  RPIVHGQTLKYNMKV
Sbjct: 5  NGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKISPRPTAGTLRPIVHGQTLKYNMKV 64

Query: 68 RAGRGFSFQELKATGDCMRVARQIDFEVD 97
          R+GRGFS +ELKA G   ++A  I   VD
Sbjct: 65 RSGRGFSLEELKAAGIPKKLAPTIGIAVD 93

The following BLAST results are available for this feature:

BLAST of Lag0022285 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038878048.1	1.8e-33	76.29	60S ribosomal protein L13-3 [Benincasa hispida] >XP_038878049.1 60S ribosomal pr...	[more]
XP_022969755.1	7.0e-33	76.29	60S ribosomal protein L13-3-like [Cucurbita maxima]	[more]
XP_022923040.1	9.1e-33	75.26	60S ribosomal protein L13-1 [Cucurbita moschata] >XP_022923041.1 60S ribosomal p...	[more]
XP_022990054.1	1.2e-32	75.26	60S ribosomal protein L13-1-like [Cucurbita maxima] >XP_022990133.1 60S ribosoma...	[more]
XP_022141234.1	1.2e-32	75.26	60S ribosomal protein L13-1 [Momordica charantia]	[more]

BLAST of Lag0022285 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P41129	2.0e-30	63.92	60S ribosomal protein L13-2 OS=Brassica napus OX=3708 PE=2 SV=1	[more]
Q9FF90	2.0e-30	64.95	60S ribosomal protein L13-3 OS=Arabidopsis thaliana OX=3702 GN=RPL13D PE=1 SV=1	[more]
P41127	2.6e-30	63.92	60S ribosomal protein L13-1 OS=Arabidopsis thaliana OX=3702 GN=RPL13B PE=1 SV=1	[more]
P41128	2.6e-30	63.92	60S ribosomal protein L13-1 OS=Brassica napus OX=3708 PE=2 SV=1	[more]
P49627	7.0e-28	66.29	60S ribosomal protein L13 OS=Nicotiana tabacum OX=4097 GN=RPL13 PE=2 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001380	Ribosomal protein L13e	PFAM	PF01294	Ribosomal_L13e	coord: 6..96 e-value: 1.0E-32 score: 113.4
IPR001380	Ribosomal protein L13e	PANTHER	PTHR11722	60S RIBOSOMAL PROTEIN L13	coord: 1..96
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..57
None	No IPR available	PANTHER	PTHR11722:SF14	60S RIBOSOMAL PROTEIN L13	coord: 1..96
IPR018256	Ribosomal protein L13e, conserved site	PROSITE	PS01104	RIBOSOMAL_L13E	coord: 68..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0022285.1	Lag0022285.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome