Lag0022282 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0022282
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionReverse transcriptase
Locationchr7: 22903998 .. 22904686 (+)
RNA-Seq ExpressionLag0022282
SyntenyLag0022282
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGCCTAGACTCAGGTTGGAGCTTGTATCCTTGTTTATAATCCATTCTTTGACCTTAGTACCTCATCTTCGCAGTCGATGGCTCGTGGTCATGGTTGGAGTCAGGGTCGTGGTCGTGGACCCAGAATTCCAGCTAATAGGCAGGAGGATCAAGCAGACAATATCAATGCTCAACATGAGACTAATCTACCGATCACTCCTGATTAGCACGGAGTTGACCCTCCACCCCCTCCAGCCCCCCAAGCTCTTCCTTGTCAGCAGGAAGTTGTTCCTCCAGCACCGCTTGCAACTCTGGATATGATGATTTCTGCTGAAACCCTCCAAACCATGTTTGAAAACGTGGCTCAACGGAACGTTTGACAGCCCTGCTAGTCGAATTGGGCACCTGAGGATTCGAAAGAGTCCAAATTCATTCGCGATTTCCAGCGGTATGGCCCTCCCTCCTTTGATGAGCGTTCAAAGAACCCGTTGGCAGTCAGACGCTTGATTGGTAACCTCGAACCCAAGTATGACTATATGAAATGTGATGACTGCCTAAAAGTTCGAGGCATGGTCTTTATTTTGAGTGACGAAGCCCGTAATTGGTGGAAGTCTGTAGCAGCATCCAAGGATCACACTAATGAACCAGTTTTATGGGAGAGGTTTAAAGATCTTCTTTACGACTATTATTTCCCCTCGAAACGGTAA

mRNA sequence

ATGTTGCCTAGACTCAGGTTGGAGCTTGTATCCTTGTTTATAATCCATTCTTTGACCTTAGTACCTCATCTTCGCAGTCGATGGCTCGTGGTCATGGTTGGAGTCAGGGTCGTGGTCGTGGACCCAGAATTCCAGCTAATAGGCAGGAGGATCAAGCAGACAATATCAATGCTCAACATGAGACTAATCTACCGATCACTCCTGATTAGCACGGAGTTGACCCTCCACCCCCTCCAGCCCCCCAAGCTCTTCCTTTCGAATTGGGCACCTGAGGATTCGAAAGAGTCCAAATTCATTCGCGATTTCCAGCGGTATGGCCCTCCCTCCTTTGATGAGCGTTCAAAGAACCCGTTGGCAGTCAGACGCTTGATTGGTAACCTCGAACCCAAGTATGACTATATGAAATGTGATGACTGCCTAAAAGTTCGAGGCATGGTCTTTATTTTGAGTGACGAAGCCCGTAATTGGTGGAAGTCTGTAGCAGCATCCAAGGATCACACTAATGAACCAGTTTTATGGGAGAGGTTTAAAGATCTTCTTTACGACTATTATTTCCCCTCGAAACGGTAA

Coding sequence (CDS)

ATGTTGCCTAGACTCAGGTTGGAGCTTGTATCCTTGTTTATAATCCATTCTTTGACCTTAGTACCTCATCTTCGCAGTCGATGGCTCGTGGTCATGGTTGGAGTCAGGGTCGTGGTCGTGGACCCAGAATTCCAGCTAATAGGCAGGAGGATCAAGCAGACAATATCAATGCTCAACATGAGACTAATCTACCGATCACTCCTGATTAGCACGGAGTTGACCCTCCACCCCCTCCAGCCCCCCAAGCTCTTCCTTTCGAATTGGGCACCTGAGGATTCGAAAGAGTCCAAATTCATTCGCGATTTCCAGCGGTATGGCCCTCCCTCCTTTGATGAGCGTTCAAAGAACCCGTTGGCAGTCAGACGCTTGATTGGTAACCTCGAACCCAAGTATGACTATATGAAATGTGATGACTGCCTAAAAGTTCGAGGCATGGTCTTTATTTTGAGTGACGAAGCCCGTAATTGGTGGAAGTCTGTAGCAGCATCCAAGGATCACACTAATGAACCAGTTTTATGGGAGAGGTTTAAAGATCTTCTTTACGACTATTATTTCCCCTCGAAACGGTAA

Protein sequence

MLPRLRLELVSLFIIHSLTLVPHLRSRWLVVMVGVRVVVVDPEFQLIGRRIKQTISMLNMRLIYRSLLISTELTLHPLQPPKLFLSNWAPEDSKESKFIRDFQRYGPPSFDERSKNPLAVRRLIGNLEPKYDYMKCDDCLKVRGMVFILSDEARNWWKSVAASKDHTNEPVLWERFKDLLYDYYFPSKR
Homology
[Close]
BLAST of Lag0022282 vs. NCBI nr
Match: XP_022157413.1 (uncharacterized protein LOC111024114 [Momordica charantia])

HSP 1 Score: 122.9 bits (307), Expect = 3.0e-24
Identity = 56/97 (57.73%), Postives = 69/97 (71.13%), Query Frame = 0 

Query: 90  PEDSKESKFIRDFQRYGPPSFDERSKNPLAVRRLIGNLEPKYDYMKCDDCLKVRGMVFIL 149
           P+D  E +FIRDF+R+GPP F+  S+ P A    +  LE  Y Y+ C D  KVRG VF+L
Sbjct: 85  PQD--EVQFIRDFKRFGPPVFNGVSERPTATEEWVRELEALYVYLGCSDDFKVRGAVFML 144

Query: 150 SDEARNWWKSVAASKDHTNEPVLWERFKDLLYDYYFP 187
             EA NWW+SVAA++DHTN PV W RFKDLLY+YYFP
Sbjct: 145 RGEAVNWWESVAAAEDHTNVPVTWARFKDLLYEYYFP 179

[Close]
BLAST of Lag0022282 vs. NCBI nr
Match: XP_022156330.1 (uncharacterized protein LOC111023250 [Momordica charantia])

HSP 1 Score: 121.7 bits (304), Expect = 6.8e-24
Identity = 55/109 (50.46%), Postives = 71/109 (65.14%), Query Frame = 0 

Query: 78  LQPPKLFLSNWAPEDSKESKFIRDFQRYGPPSFDERSKNPLAVRRLIGNLEPKYDYMKCD 137
           L PP+ F +        E++FI+DF+RYGPP+FD  SK        +  LE  Y Y+ C+
Sbjct: 55  LHPPRHFHT-----PQSEAQFIKDFKRYGPPTFDGGSKKATTAEEWVRELEALYVYLGCE 114

Query: 138 DCLKVRGMVFILSDEARNWWKSVAASKDHTNEPVLWERFKDLLYDYYFP 187
           D  KV+G VF+L  +A NWW SVAA++DH N PV W RFKDLLYDYY+P
Sbjct: 115 DQFKVKGAVFMLRGQALNWWDSVAAAEDHANIPVTWARFKDLLYDYYYP 158

[Close]
BLAST of Lag0022282 vs. NCBI nr
Match: XP_022159311.1 (uncharacterized protein LOC111025720, partial [Momordica charantia])

HSP 1 Score: 120.9 bits (302), Expect = 1.2e-23
Identity = 54/93 (58.06%), Postives = 66/93 (70.97%), Query Frame = 0 

Query: 94  KESKFIRDFQRYGPPSFDERSKNPLAVRRLIGNLEPKYDYMKCDDCLKVRGMVFILSDEA 153
           +E +FIRDF+R+GPP F+  S+ P AV   +  LE  Y Y+ C D  KVRG VF+L  EA
Sbjct: 10  EEVQFIRDFKRFGPPVFNGVSERPTAVEEWVRELEALYVYLGCSDDFKVRGAVFMLRGEA 69

Query: 154 RNWWKSVAASKDHTNEPVLWERFKDLLYDYYFP 187
            NWW+SVAA++DH N PV W RFKDLLY YYFP
Sbjct: 70  VNWWESVAAAEDHANVPVTWARFKDLLYGYYFP 102

[Close]
BLAST of Lag0022282 vs. NCBI nr
Match: XP_022155925.1 (uncharacterized protein LOC111022925 [Momordica charantia])

HSP 1 Score: 120.9 bits (302), Expect = 1.2e-23
Identity = 53/93 (56.99%), Postives = 66/93 (70.97%), Query Frame = 0 

Query: 94  KESKFIRDFQRYGPPSFDERSKNPLAVRRLIGNLEPKYDYMKCDDCLKVRGMVFILSDEA 153
           +E +FIRDF+R+GPP F+  S+ P A    +  LE  Y Y+ C D  KVRG VF+L  EA
Sbjct: 68  EEVQFIRDFKRFGPPVFNGVSERPTAAEEWVRELEALYVYLGCSDDFKVRGAVFMLQGEA 127

Query: 154 RNWWKSVAASKDHTNEPVLWERFKDLLYDYYFP 187
            NWW+SVAA++DH N PV W RFKDLLY+YYFP
Sbjct: 128 VNWWESVAAAEDHANVPVTWARFKDLLYEYYFP 160

[Close]
BLAST of Lag0022282 vs. NCBI nr
Match: XP_022158749.1 (uncharacterized protein LOC111025213 [Momordica charantia])

HSP 1 Score: 120.6 bits (301), Expect = 1.5e-23
Identity = 51/92 (55.43%), Postives = 66/92 (71.74%), Query Frame = 0 

Query: 95  ESKFIRDFQRYGPPSFDERSKNPLAVRRLIGNLEPKYDYMKCDDCLKVRGMVFILSDEAR 154
           E++FI+DF+RYGPP+FD  S+   A    I  LE  Y Y+ C+D  KV+G VF+L  EA 
Sbjct: 68  EARFIKDFKRYGPPTFDGESERATAAEEWIRELEALYAYLGCEDQFKVKGAVFMLRGEAL 127

Query: 155 NWWKSVAASKDHTNEPVLWERFKDLLYDYYFP 187
           NWW SVAA++DH N P+ W RFK+LLYDYY+P
Sbjct: 128 NWWDSVAAAEDHANVPIPWARFKNLLYDYYYP 159

The following BLAST results are available for this feature:
BLAST of Lag0022282 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022157413.13.0e-2457.73uncharacterized protein LOC111024114 [Momordica charantia][more]
XP_022156330.16.8e-2450.46uncharacterized protein LOC111023250 [Momordica charantia][more]
XP_022159311.11.2e-2358.06uncharacterized protein LOC111025720, partial [Momordica charantia][more]
XP_022155925.11.2e-2356.99uncharacterized protein LOC111022925 [Momordica charantia][more]
XP_022158749.11.5e-2355.43uncharacterized protein LOC111025213 [Momordica charantia][more]
BLAST of Lag0022282 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0022282.1Lag0022282.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding