Lag0022278 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0022278
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionS-protein homolog
Locationchr7: 22669065 .. 22671588 (-)
RNA-Seq ExpressionLag0022278
SyntenyLag0022278
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCGTGGGCGTCGCCGGAGATGGAGGCAGCGACAGAAGCACTGGTGGAGCTTCTCGCCTTCCTCCTCAAGGAACATCATTATTAATCCACAATCTCATCTTTCTGCAATTTTTATCCTCTTTTCTTCCCAAATCGAATAGTGAGTTACAACAAAATTTTATCTTTCTTTTATGGATTGATTCAATTCTGACAAAAGAAACACAAAATTAAGAGGAAAATCGATTTGGTTATGCATGAATTTGAAGAGAAAAGACGAAAAAAAAACGACCAGTCTCATTTGACCGGTGGCTTGCTTCACAAACCAATTAGGGTACAACGACAAAATAGTCATTACCAAAAATTGTAAGGACAATAAGGGAATGTAAAAATTCACCCCTCTAAGCCCCTCTTAATATAGTAGAGATTAAAAGTCTTAGGCATATCAATAACTTCCCTAATAAGTCAAGGATTTAAATTCCAATCAAAATTTCCCCAAATATAGATAAGAATGGTCATAACTATATCATAACAAAAATCTAACTTTATAAGATACATTAATTAATAGCTAAATTTGACAAAATGTATTAAGAAAAATGGTATGTGTATAGTTGGATATTCTTTCCTTGTACAAACTTCATTTTGATTTTATATAAATGGTTCATGATAAAAAAAAAAAAAATGAAACATTAGAAATTCAAAATCAAGAAAAAAAAAATGAAGGGTCTAAATAGTTTCTTTGTAGTTTTGCTGTTTGCTTTTGCATTAACGATTAACGTTGTCAACTGTTTTGCAGCATCCAAGTATGTACGGCCATTGACGCCAATGAGACTGGTGATTATCAACCGTCAAACAAATGATAATCTGAGGGCTCATTGCCATTCCAAAGATGATGATTTAGGTGAATGATTTAGAAAATTTTATTTTTTCATTTTTGTCACATTTGATAATTATTTGGGTCTCATTTGATAACCATTTGGTTTTTAGTTTTTGAAAATTAAGTCTATAAATACTACTACCACCTACAAGTTTGTTCGTTTGGTTTTTGAAAATTTAGTCTATAAACACTACTACCACCCACAAGTTTGTTTATTTTGTCATCTACACTCTTCCCATGTTTTCAAAAATCAAGTCAAATTTTAAAAACTAAAAAAAAAATAGTTTTCAAAACTTGTTTTTGTTTTTGGAATTTGGCTAAGAATTTGAATGTGTGTTTAACAAATATGAAAACCATGGCAAGTAAATTAGGAGAAAATAAGCATAGTTTTCAAAAACAAAAAACAAAAAACTTCATATGGTTATCAACTAGAGTTTTTGGTTTTTAAAGATTAAGTTTATAAGCACTAGTTTCTTTGTTTTGTTATCTACTTCCTTTCCATGTTTTGGAAAACCAAGTAAAGTTTTGAAAACTAAAAAAAAAATGTTTTTTTTTTAAAAAACCTTATTTTTGTTTTGGAATTTAGCTAGGAATTCAAATATATCCTTAACGAAGACAAAACCATTGCAAGGAAAATTAGGAGAAAACAAACAAAATTTTCAATCATTTTTTTTTCAAAAACCAAGAGTTTTCTAACTTTCTATTGTTTATTCTTTAAATTGGGTTTTTCTTTTCTAGTGTTTGAATCTCATGTTCCTCCATCAACTTTCAAGTTTGTTTTTATTTCGGTCTTTGAACTTTCAAATGTCTATTTTAATAAGCTTCAAGTTATTTCTATTTTGATATTCAAACAGTCAAAATGTATTATTATAGTTCCTAAACTTTTAAAAAAGAACTATTTTTGGTACTCTAACATATGTTATCCAATCCTCATCTTTATCCTATGTGATTTGAAATTTTGCTCATATCAACATGCTAGTATACATACTCAAAACTACATTAATTTGTAGAATAAAAATAAAGATAAGAATTCCAACATAGTTTTTTTTTCTTTTAAGTTCAATGACTAAAATAAATATTTTAAAAATTCAAGACCAAAATGATCCATTTTAAAAGTCTGGTAAGGTACAATGGACACAAAACCGATCTACACAATGGTAACGATATAGTTCACGTTTTGGGCATAAGCCCTGTCCTCCCTTATAAACCTATGATCATTCCCTTATCTAGCTAATGTAGGATTTTGGTCGCATGCACTCCCAACAAGTCTAGAGACTCAAATAGAACAAACTTGAACGTTGATAAGGACCAAATGAGATTTAAATTATTTTTTAACTGAATTTGAGGGTCCAACGTGGTTTGATATAAAATTCTGGATCTGCCACCGATTCAGGTGAGCAAGTCATCGAAATCGGGAAGAACATCCAGTGGCCTTTCAAGGAGAACTTTTTGGGAACGACGTTGTATTGGTGCGACTTTCACAACAAAGTAGCACATGCTTCGTTTCAAATTTTTTGGCCAGAGAACTCATCTTGGCTTTCAGATCGATGCAACGTGGGCGTCGATTCAACCTGTGTTTGGGCTGCTGATGACAAGGGCTTTTCCATTTTAAATTCTCCCATAAAACAGTTCGAGTTCATTCATCCATGGGAACCTGGTAGTGCTTAG

mRNA sequence

ATGGTCGTGGGCGTCGCCGGAGATGGAGGCAGCGACAGAAGCACTGGTGGAGCTTCTCGCCTTCCTCCTCAAGGAACATCATTATTAATCCACAATCTCATCTTTCTGCAATTTTTATCCTCTTTTCTTCCCAAATCGAATACATCCAAGTATGTACGGCCATTGACGCCAATGAGACTGGTGATTATCAACCGTCAAACAAATGATAATCTGAGGGCTCATTGCCATTCCAAAGATGATGATTTAGGTGAGCAAGTCATCGAAATCGGGAAGAACATCCAGTGGCCTTTCAAGGAGAACTTTTTGGGAACGACGTTGTATTGGTGCGACTTTCACAACAAAGTAGCACATGCTTCGTTTCAAATTTTTTGGCCAGAGAACTCATCTTGGCTTTCAGATCGATGCAACGTGGGCGTCGATTCAACCTGTGTTTGGGCTGCTGATGACAAGGGCTTTTCCATTTTAAATTCTCCCATAAAACAGTTCGAGTTCATTCATCCATGGGAACCTGGTAGTGCTTAG

Coding sequence (CDS)

ATGGTCGTGGGCGTCGCCGGAGATGGAGGCAGCGACAGAAGCACTGGTGGAGCTTCTCGCCTTCCTCCTCAAGGAACATCATTATTAATCCACAATCTCATCTTTCTGCAATTTTTATCCTCTTTTCTTCCCAAATCGAATACATCCAAGTATGTACGGCCATTGACGCCAATGAGACTGGTGATTATCAACCGTCAAACAAATGATAATCTGAGGGCTCATTGCCATTCCAAAGATGATGATTTAGGTGAGCAAGTCATCGAAATCGGGAAGAACATCCAGTGGCCTTTCAAGGAGAACTTTTTGGGAACGACGTTGTATTGGTGCGACTTTCACAACAAAGTAGCACATGCTTCGTTTCAAATTTTTTGGCCAGAGAACTCATCTTGGCTTTCAGATCGATGCAACGTGGGCGTCGATTCAACCTGTGTTTGGGCTGCTGATGACAAGGGCTTTTCCATTTTAAATTCTCCCATAAAACAGTTCGAGTTCATTCATCCATGGGAACCTGGTAGTGCTTAG

Protein sequence

MVVGVAGDGGSDRSTGGASRLPPQGTSLLIHNLIFLQFLSSFLPKSNTSKYVRPLTPMRLVIINRQTNDNLRAHCHSKDDDLGEQVIEIGKNIQWPFKENFLGTTLYWCDFHNKVAHASFQIFWPENSSWLSDRCNVGVDSTCVWAADDKGFSILNSPIKQFEFIHPWEPGSA
Homology
BLAST of Lag0022278 vs. NCBI nr
Match: XP_038907112.1 (S-protein homolog 74-like [Benincasa hispida])

HSP 1 Score: 157.9 bits (398), Expect = 7.8e-35
Identity = 70/121 (57.85%), Postives = 87/121 (71.90%), Query Frame = 0

Query: 49  SKYVRPLTPMRLVIINRQTNDNLRAHCHSKDDDLGEQVIE-IGKNIQWPFKENFLGTTLY 108
           SKY  PLT  ++ IIN Q N  L  HC SKDDDLG  VI+  G++  W FKENFL TT +
Sbjct: 29  SKYQLPLTNWQVTIINYQKNAALEVHCKSKDDDLGVHVIKNEGEHYNWGFKENFLQTTRF 88

Query: 109 WCDFHNKVAHASFQIFWPENSSWLSDRCNVGVDSTCVWAADDKGFSILNSPIKQFEFIHP 168
           WC+F +++ HASF++FWPE+ +WLSDRC+   DS CVW AD+KGFS+LN P K  EF HP
Sbjct: 89  WCNFQSRLGHASFEVFWPESGTWLSDRCD---DSNCVWVADNKGFSLLNIPTKTLEFQHP 146

BLAST of Lag0022278 vs. NCBI nr
Match: XP_011656368.1 (S-protein homolog 1 [Cucumis sativus] >KGN45709.1 hypothetical protein Csa_005711 [Cucumis sativus])

HSP 1 Score: 154.8 bits (390), Expect = 6.6e-34
Identity = 69/121 (57.02%), Postives = 84/121 (69.42%), Query Frame = 0

Query: 49  SKYVRPLTPMRLVIINRQTNDNLRAHCHSKDDDLGEQVIE-IGKNIQWPFKENFLGTTLY 108
           SKY  PLT   + IIN Q N +L+ HC SKDDDLG  VI+  G++  W FKEN+L TT Y
Sbjct: 29  SKYQLPLTDWTVTIINYQINASLQVHCKSKDDDLGVHVIQNEGEHYSWGFKENWLQTTKY 88

Query: 109 WCDFHNKVAHASFQIFWPENSSWLSDRCNVGVDSTCVWAADDKGFSILNSPIKQFEFIHP 168
           WCDF +K+ HASF++FWPE  +W SDRC  G +S CVW A   GFS+LN+P K  EF HP
Sbjct: 89  WCDFQSKLGHASFEVFWPERGTWFSDRC--GSNSNCVWVAAHDGFSLLNAPAKTLEFQHP 147

BLAST of Lag0022278 vs. NCBI nr
Match: XP_008458671.1 (PREDICTED: uncharacterized protein LOC103498000 [Cucumis melo])

HSP 1 Score: 151.4 bits (381), Expect = 7.3e-33
Identity = 66/121 (54.55%), Postives = 84/121 (69.42%), Query Frame = 0

Query: 49  SKYVRPLTPMRLVIINRQTNDNLRAHCHSKDDDLGEQVIE-IGKNIQWPFKENFLGTTLY 108
           SKY  PLT  ++ IIN Q N +L  HC SKDDDLG  VI+  G+   W FKEN+L TT +
Sbjct: 29  SKYQLPLTDWQVTIINYQINASLEVHCKSKDDDLGVHVIQNEGERYSWGFKENWLQTTKF 88

Query: 109 WCDFHNKVAHASFQIFWPENSSWLSDRCNVGVDSTCVWAADDKGFSILNSPIKQFEFIHP 168
           WC+F +++ HASF++FWPE  +WLSDRC+   +S CVW A + GFS+LN P K  EF HP
Sbjct: 89  WCNFQSRLGHASFEVFWPETGTWLSDRCS---NSNCVWVASNDGFSLLNGPAKTLEFQHP 146

BLAST of Lag0022278 vs. NCBI nr
Match: XP_004136434.3 (S-protein homolog 1-like [Cucumis sativus])

HSP 1 Score: 133.3 bits (334), Expect = 2.1e-27
Identity = 56/118 (47.46%), Postives = 71/118 (60.17%), Query Frame = 0

Query: 54  PLTPMRLVIINRQTNDNLRAHCHSKDDDLGEQVIEIGKNIQWPFKENFLGTTLYWCDFHN 113
           PL+  ++ I+N  T D L   C SKDDDLG Q + + +   W FKEN   TTLYWC  HN
Sbjct: 29  PLSSWKINILNEMTKDTLFLQCKSKDDDLGAQNLGVKQQFSWSFKENLWQTTLYWCYMHN 88

Query: 114 KVAHASFQIFWPENSSWLSDRCNVGVDSTCVWAADDKGFSILNSPIKQFEFIHPWEPG 172
             +HASF +FWPE S WL+ RC +     C+W+A D G  +  +P   FE IH WEPG
Sbjct: 89  AESHASFNVFWPEKSGWLAFRCQL---RNCIWSARDDGIYLKTNPHNTFELIHTWEPG 143

BLAST of Lag0022278 vs. NCBI nr
Match: KGN60342.2 (hypothetical protein Csa_002569, partial [Cucumis sativus])

HSP 1 Score: 133.3 bits (334), Expect = 2.1e-27
Identity = 56/118 (47.46%), Postives = 71/118 (60.17%), Query Frame = 0

Query: 54  PLTPMRLVIINRQTNDNLRAHCHSKDDDLGEQVIEIGKNIQWPFKENFLGTTLYWCDFHN 113
           PL+  ++ I+N  T D L   C SKDDDLG Q + + +   W FKEN   TTLYWC  HN
Sbjct: 39  PLSSWKINILNEMTKDTLFLQCKSKDDDLGAQNLGVKQQFSWSFKENLWQTTLYWCYMHN 98

Query: 114 KVAHASFQIFWPENSSWLSDRCNVGVDSTCVWAADDKGFSILNSPIKQFEFIHPWEPG 172
             +HASF +FWPE S WL+ RC +     C+W+A D G  +  +P   FE IH WEPG
Sbjct: 99  AESHASFNVFWPEKSGWLAFRCQL---RNCIWSARDDGIYLKTNPHNTFELIHTWEPG 153

BLAST of Lag0022278 vs. ExPASy Swiss-Prot
Match: F4JLQ5 (S-protein homolog 2 OS=Arabidopsis thaliana OX=3702 GN=SPH2 PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.3e-12
Identity = 39/115 (33.91%), Postives = 52/115 (45.22%), Query Frame = 0

Query: 56  TPMRLVIINRQTNDNLRA--HCHSKDDDLGEQVIEIGKNIQWPFKENFLGTTLYWCDFHN 115
           T  R V IN    + L    HC SKDDDLG + ++ G++  + F   F G TLY+C F  
Sbjct: 45  TSKRTVEINNDLGNQLTLLYHCKSKDDDLGNRTLQPGESWSFSFGRQFFGRTLYFCSFSW 104

Query: 116 KVAHASFQIFWPENSSWLSDRCNVGVDSTCVWAADDKGFSILNSPIKQFEFIHPW 169
                SF I+     S   ++C       CVW     G    N   KQF+  +PW
Sbjct: 105 PNESHSFDIYKDHRDSGGDNKCE---SDRCVWKIRRNGPCRFNDETKQFDLCYPW 156

BLAST of Lag0022278 vs. ExPASy Swiss-Prot
Match: F4JLS0 (S-protein homolog 1 OS=Arabidopsis thaliana OX=3702 GN=SPH1 PE=2 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.6e-11
Identity = 35/111 (31.53%), Postives = 49/111 (44.14%), Query Frame = 0

Query: 61  VIINRQTNDNLRAHCHSKDDDLGEQVIEIGKNIQWPFKENFLGTTLYWCDFHNKVAHASF 120
           V+    T + L  HC SK+DDLGE  ++      W F EN L +T +WC  +    H + 
Sbjct: 45  VVNGLTTGETLFIHCKSKEDDLGEINLKFRNRFSWNFGENMLHSTFFWCYMNKDNGHMNV 104

Query: 121 QIFWPENSSWLSDRCNVGVDSTCVWAADDKGFSILNSPIKQFEFIHPWEPG 172
            +FW  +   L  RC       C+W A   G  + NS   +      WE G
Sbjct: 105 NVFW--DDVILFHRCGW---KNCIWTAKTDGLYLWNSASGEDVLSRKWEVG 150

BLAST of Lag0022278 vs. ExPASy Swiss-Prot
Match: Q2HQ46 (S-protein homolog 74 OS=Arabidopsis thaliana OX=3702 GN=SPH74 PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.1e-11
Identity = 34/105 (32.38%), Postives = 51/105 (48.57%), Query Frame = 0

Query: 67  TNDNLRAHCHSKDDDLGEQVIEIGKNIQWPFKENFLGTTLYWCDFHNKVAHASFQIFWPE 126
           T + L  HC SK++DLG+  ++      W F EN L +TL+WC       H + ++FW  
Sbjct: 51  TGETLFIHCKSKENDLGDINLKFLDRFSWNFGENMLHSTLFWCYMSKDDGHMNVKVFW-- 110

Query: 127 NSSWLSDRCNVGVDSTCVWAADDKGFSILNSPIKQFEFIHPWEPG 172
           +   L  RC+      CVW A + G  + NS I +      W+ G
Sbjct: 111 DDVILFHRCDW---KNCVWTAKNDGLYLWNSAIGEDVLSEKWKSG 150

BLAST of Lag0022278 vs. ExPASy Swiss-Prot
Match: P0DN92 (S-protein homolog 24 OS=Arabidopsis thaliana OX=3702 GN=SPH24 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.9e-07
Identity = 33/102 (32.35%), Postives = 49/102 (48.04%), Query Frame = 0

Query: 68  NDN---LRAHCHSKDDDLGEQVIEIGKNIQWPFKENFLGTTLYWCDF-HNKVAHASFQIF 127
           NDN   L  HC S+DDDLG  ++  G+   W F  NF  +TLY+C F   ++    F+I+
Sbjct: 52  NDNDYLLGIHCKSRDDDLGFHILAKGELFGWKFHVNFCYSTLYFCGFSQGQMKKGVFEIY 111

Query: 128 WPENSSWLSDRCNVGVDSTCVWAADDKG-FSILNSPIKQFEF 165
                 +   RC     + C W A+  G +     P+K + F
Sbjct: 112 RANRDFY---RC-----ANCTWKAEKDGIYGYSEDPVKGYLF 145

BLAST of Lag0022278 vs. ExPASy Swiss-Prot
Match: P0DN93 (S-protein homolog 29 OS=Arabidopsis thaliana OX=3702 GN=SPH29 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 4.2e-07
Identity = 33/109 (30.28%), Postives = 48/109 (44.04%), Query Frame = 0

Query: 64  NRQTNDNLRAHCHSKDDDLGEQVIEIGKNIQWPFKENFLGTTLYWCDFHNKVAHASFQIF 123
           N      L   C SKDDDLGE ++  G+   W F+ ++  TTL+ C F            
Sbjct: 38  NISPQTTLTISCRSKDDDLGEHLLLHGQAFLWKFRPSWFRTTLFTCKF-----------L 97

Query: 124 WPENSSWL----SDRCNVGVDSTCVWAADDKGFSILNSPIKQFEFIHPW 169
           W  N  W     SDR + G   +C W+ +     I  +  K+F+  +PW
Sbjct: 98  WNNNVKWFDTYRSDR-DQGHCYSCNWSINADSACISGNFNKKFDRCYPW 134

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038907112.17.8e-3557.85S-protein homolog 74-like [Benincasa hispida][more]
XP_011656368.16.6e-3457.02S-protein homolog 1 [Cucumis sativus] >KGN45709.1 hypothetical protein Csa_00571... [more]
XP_008458671.17.3e-3354.55PREDICTED: uncharacterized protein LOC103498000 [Cucumis melo][more]
XP_004136434.32.1e-2747.46S-protein homolog 1-like [Cucumis sativus][more]
KGN60342.22.1e-2747.46hypothetical protein Csa_002569, partial [Cucumis sativus][more]
Match NameE-valueIdentityDescription
F4JLQ53.3e-1233.91S-protein homolog 2 OS=Arabidopsis thaliana OX=3702 GN=SPH2 PE=3 SV=1[more]
F4JLS01.6e-1131.53S-protein homolog 1 OS=Arabidopsis thaliana OX=3702 GN=SPH1 PE=2 SV=1[more]
Q2HQ462.1e-1132.38S-protein homolog 74 OS=Arabidopsis thaliana OX=3702 GN=SPH74 PE=2 SV=1[more]
P0DN921.9e-0732.35S-protein homolog 24 OS=Arabidopsis thaliana OX=3702 GN=SPH24 PE=3 SV=1[more]
P0DN934.2e-0730.28S-protein homolog 29 OS=Arabidopsis thaliana OX=3702 GN=SPH29 PE=3 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010264Plant self-incompatibility S1PFAMPF05938Self-incomp_S1coord: 60..168
e-value: 1.2E-20
score: 74.0
IPR010264Plant self-incompatibility S1PANTHERPTHR31232FAMILY NOT NAMEDcoord: 55..154
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21
NoneNo IPR availablePANTHERPTHR31232:SF34PUTATIVE-RELATEDcoord: 55..154

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0022278.1Lag0022278.1mRNA