Lag0022212 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0022212
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionMyb_DNA-bind_3 domain-containing protein
Locationchr7: 21242044 .. 21242474 (+)
RNA-Seq ExpressionLag0022212
SyntenyLag0022212
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTAGATATTAACACCTTCACTTCTGTTTCCAAGCGCAACAAGAAGAAGTCATTTGTAGTTGACTTGGTTGGAGAAAAATTAGATATGCTAACAAATTCTATGGACAAAGTAGCTATTGTACTTGATAAAGGTATGAACATCCTTAGATTTTAAGTGTATTTCAATTTATAGTCAAATATGTGAAAATATTTCAACATTATATATATGTATGTATATATTTCATTATAGGGAATGATGTTGCTAGAAAGACAAATGTTATAGCTAGAGAACATAATCAACGCATTTATAGTGCTGAAGAGGTTTTCCATGAGTTGCTAAATATGAGAATTTCACCTAAGATGGCATTCAGGGCTTCTAGCTTTCTTTTATCTGATCCTATAGTCACAGAGACATTTTTTGGATGTCCCGAATCTATGCGCAAAGAATGA

mRNA sequence

ATGTTAGATATTAACACCTTCACTTCTGTTTCCAAGCGCAACAAGAAGAAGTCATTTGTAGTTGACTTGGTTGGAGAAAAATTAGATATGCTAACAAATTCTATGGACAAAGTAGCTATTGTACTTGATAAAGGGAATGATGTTGCTAGAAAGACAAATGTTATAGCTAGAGAACATAATCAACGCATTTATAGTGCTGAAGAGGTTTTCCATGAGTTGCTAAATATGAGAATTTCACCTAAGATGGCATTCAGGGCTTCTAGCTTTCTTTTATCTGATCCTATAGTCACAGAGACATTTTTTGGATGTCCCGAATCTATGCGCAAAGAATGA

Coding sequence (CDS)

ATGTTAGATATTAACACCTTCACTTCTGTTTCCAAGCGCAACAAGAAGAAGTCATTTGTAGTTGACTTGGTTGGAGAAAAATTAGATATGCTAACAAATTCTATGGACAAAGTAGCTATTGTACTTGATAAAGGGAATGATGTTGCTAGAAAGACAAATGTTATAGCTAGAGAACATAATCAACGCATTTATAGTGCTGAAGAGGTTTTCCATGAGTTGCTAAATATGAGAATTTCACCTAAGATGGCATTCAGGGCTTCTAGCTTTCTTTTATCTGATCCTATAGTCACAGAGACATTTTTTGGATGTCCCGAATCTATGCGCAAAGAATGA

Protein sequence

MLDINTFTSVSKRNKKKSFVVDLVGEKLDMLTNSMDKVAIVLDKGNDVARKTNVIAREHNQRIYSAEEVFHELLNMRISPKMAFRASSFLLSDPIVTETFFGCPESMRKE
Homology
BLAST of Lag0022212 vs. NCBI nr
Match: KAF7123891.1 (hypothetical protein RHSIM_Rhsim12G0045600 [Rhododendron simsii])

HSP 1 Score: 73.6 bits (179), Expect = 1.2e-09
Identity = 39/102 (38.24%), Postives = 60/102 (58.82%), Query Frame = 0

Query: 8   TSVSKRNKKKSFVVDLVGEKLDMLTNSMDKVAIVLDKGNDVARKTNVIAREHNQRIYSAE 67
           T  SK  K+K  +VDL+ ++  +  N +++VAI L +GN V  + N+  +E   R+YS E
Sbjct: 358 TRSSKGTKRKGAMVDLLLKQFQVFNNGINEVAIALREGNLVLHEGNLALKEGQPRVYSEE 417

Query: 68  EVFHELLNMRISPKMAFRASSFLLSDPIVTETFFGCPESMRK 110
           EVF EL N+ +   + F A +F+ S+  +   FFGCP   RK
Sbjct: 418 EVFQELENLGVEEDLQFLAYNFITSNLGLVRAFFGCPTHRRK 459

BLAST of Lag0022212 vs. NCBI nr
Match: KZN04301.1 (hypothetical protein DCAR_005138 [Daucus carota subsp. sativus])

HSP 1 Score: 64.3 bits (155), Expect = 7.5e-07
Identity = 34/99 (34.34%), Postives = 57/99 (57.58%), Query Frame = 0

Query: 11  SKRNKKKSFVVDLVGEKLDMLTNSMDKVAIVLDKGNDVARKTNVIAREHNQRIYSAEEVF 70
           + + KKK  VV+   +++  + +SM+ VA  L +GN + ++TN+I  +  QR+YS EE+F
Sbjct: 134 NSKGKKKKLVVE---DEMAKIMSSMEHVADALKEGNVILKETNLILEQSRQRVYSEEEIF 193

Query: 71  HELLNMRISPKMAFRASSFLLSDPIVTETFFGCPESMRK 110
            +L  + + P+  + A  FL  +       FGCP  MRK
Sbjct: 194 KQLEVIGLDPEAIYSAYLFLAKNQNEARILFGCPLPMRK 229

BLAST of Lag0022212 vs. NCBI nr
Match: KAG5515026.1 (hypothetical protein RHGRI_036157 [Rhododendron griersonianum])

HSP 1 Score: 63.9 bits (154), Expect = 9.7e-07
Identity = 31/80 (38.75%), Postives = 47/80 (58.75%), Query Frame = 0

Query: 30  MLTNSMDKVAIVLDKGNDVARKTNVIAREHNQRIYSAEEVFHELLNMRISPKMAFRASSF 89
           +  N +++VA  L +GN V  + N+  +E   R+YS EEVF EL N+ +   + F A +F
Sbjct: 42  VFNNGINEVAAALREGNLVLHEGNLALKEGQPRVYSEEEVFQELENLGVEEDLQFLAYNF 101

Query: 90  LLSDPIVTETFFGCPESMRK 110
           + S+P +   FFGCP   RK
Sbjct: 102 ITSNPGLVRAFFGCPTHRRK 121

BLAST of Lag0022212 vs. NCBI nr
Match: EXB55017.1 (hypothetical protein L484_007348 [Morus notabilis])

HSP 1 Score: 57.4 bits (137), Expect = 9.1e-05
Identity = 26/81 (32.10%), Postives = 42/81 (51.85%), Query Frame = 0

Query: 29  DMLTNSMDKVAIVLDKGNDVARKTNVIAREHNQRIYSAEEVFHELLNMRISPKMAFRASS 88
           D+     + +   +    +  R+ N IA+    R+YS EEVF EL+N+ +  ++ ++A +
Sbjct: 67  DLFRKEFESMREAISSVTEAIREGNAIAKRSRARVYSEEEVFAELVNIGVDERLRYKAYT 126

Query: 89  FLLSDPIVTETFFGCPESMRK 110
           FL  D      FFGCP   RK
Sbjct: 127 FLTQDATRVRAFFGCPVEERK 147

BLAST of Lag0022212 vs. NCBI nr
Match: XP_010094565.1 (uncharacterized protein LOC21407583 [Morus notabilis] >XP_024020127.1 uncharacterized protein LOC21407583 [Morus notabilis] >XP_024020128.1 uncharacterized protein LOC21407583 [Morus notabilis] >EXB56319.1 hypothetical protein L484_024861 [Morus notabilis])

HSP 1 Score: 57.0 bits (136), Expect = 1.2e-04
Identity = 31/77 (40.26%), Postives = 45/77 (58.44%), Query Frame = 0

Query: 37  KVAIVLDKGNDVA---RKTNVIAREHNQRIYSAEEVFHELLNMRISPKMAFRASSFLLSD 96
           +++ V D   DVA   R+ N IA      +YS +EVF EL+N+ I  ++ FRA +FL+++
Sbjct: 232 ELSSVRDAIKDVAAAIREGNAIAERSRPHVYSEQEVFRELVNIGIEKQLRFRAYTFLIAN 291

Query: 97  PIVTETFFGCPESMRKE 111
                 FFGCP   RKE
Sbjct: 292 ARRVRAFFGCPVGERKE 308

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAF7123891.11.2e-0938.24hypothetical protein RHSIM_Rhsim12G0045600 [Rhododendron simsii][more]
KZN04301.17.5e-0734.34hypothetical protein DCAR_005138 [Daucus carota subsp. sativus][more]
KAG5515026.19.7e-0738.75hypothetical protein RHGRI_036157 [Rhododendron griersonianum][more]
EXB55017.19.1e-0532.10hypothetical protein L484_007348 [Morus notabilis][more]
XP_010094565.11.2e-0440.26uncharacterized protein LOC21407583 [Morus notabilis] >XP_024020127.1 uncharacte... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0022212.1Lag0022212.1mRNA