Lag0022208 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0022208
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionReverse transcriptase
Locationchr7: 21180497 .. 21181216 (-)
RNA-Seq ExpressionLag0022208
SyntenyLag0022208
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCGTTCGAGAGCTGTTATTTGTCTACGAACGTGCGTCAGGTCAAACTATTAACTATGAGAAGTCTGTGGTGGCGTTTAGTCCAAATACTGAGGATGACTCTCAACAGTATATCAGTCAGGTGCTCTCAACCTCTTGCAGCCCTTATCATTCTCAGTATCTTGGCCTCCCGTCATTCATGCCTCGCAATCGGTCAGGGATGTTGAAATTTATTAAGGATCGCATTTGGAAGCAAATTCAGGGTTTGAAGGGAAAGCTTTTTTCTACACGAGGAAAATAAGTGCTACTCAAATCTATTGTCCAAGCTATTCCATGTTACACGATGAATTGCTTTCGCCTCCCTCAGGGCCTGATTCGAGAGGTTCATAGAGCCATGGCTCGGTTCTGGTGGAATGGTTCTAAGGAGGCATAGAGGATCCACTGGATGAAATGGGAGACCTTGTGCCTACCTAAGTGCATGGGAGGTCTGGGGTTTCGAAACATGGAGCTTTTTAATCAGACCCTTTTGGCTAAGCAGTGTTGGCGTATCTTTCAGGAGCCTAATACTCTTCTGTCCACTGTTCTCAAGGGGCGGTACTTCCCTCAGTCCACATTCCTTGAGGCAGAGTTGAGATCTAGTTCATCTTTCATTTGGCGTAGCTATGGGGTCGGGACCTATTGGCACGTGGGTGTCTTGGCGGATTGGCAATGGGCTATCCATACCTATTTATGGTTCTAA

mRNA sequence

ATGGTCGTTCGAGAGCTGTTATTTGTCTACGAACGTGCGTCAGGTCAAACTATTAACTATGAGAAGTCTGTGGTGGCGTTTAGTCCAAATACTGAGGATGACTCTCAACAGTATATCAGTCAGGAGCCTAATACTCTTCTGTCCACTGTTCTCAAGGGGCGGTACTTCCCTCAGTCCACATTCCTTGAGGCAGAGTTGAGATCTAGTTCATCTTTCATTTGGCGTAGCTATGGGGTCGGGACCTATTGGCACGTGGGTGTCTTGGCGGATTGGCAATGGGCTATCCATACCTATTTATGGTTCTAA

Coding sequence (CDS)

ATGGTCGTTCGAGAGCTGTTATTTGTCTACGAACGTGCGTCAGGTCAAACTATTAACTATGAGAAGTCTGTGGTGGCGTTTAGTCCAAATACTGAGGATGACTCTCAACAGTATATCAGTCAGGAGCCTAATACTCTTCTGTCCACTGTTCTCAAGGGGCGGTACTTCCCTCAGTCCACATTCCTTGAGGCAGAGTTGAGATCTAGTTCATCTTTCATTTGGCGTAGCTATGGGGTCGGGACCTATTGGCACGTGGGTGTCTTGGCGGATTGGCAATGGGCTATCCATACCTATTTATGGTTCTAA

Protein sequence

MVVRELLFVYERASGQTINYEKSVVAFSPNTEDDSQQYISQEPNTLLSTVLKGRYFPQSTFLEAELRSSSSFIWRSYGVGTYWHVGVLADWQWAIHTYLWF
Homology
BLAST of Lag0022208 vs. NCBI nr
Match: OMO52016.1 (reverse transcriptase [Corchorus capsularis])

HSP 1 Score: 65.1 bits (157), Expect = 4.0e-07
Identity = 36/81 (44.44%), Postives = 50/81 (61.73%), Query Frame = 0

Query: 6    LLFVYERASGQTINYEKSVVAFSPNT----EDDSQQY--ISQEPNTLLSTVLKGRYFPQS 65
            LL ++E ASGQ IN +KS + FS NT    ++    Y  I + P+TL + VL+ +Y+P+ 
Sbjct: 973  LLNLFEAASGQKINIDKSSILFSANTPLAIQNKVMSYLGIQRNPDTLCTRVLRAKYYPRG 1032

Query: 66   TFLEAELRSSSSFIWRSYGVG 81
             FL A L SS SF+WRS   G
Sbjct: 1033 DFLHATLESSPSFLWRSLMAG 1053

BLAST of Lag0022208 vs. NCBI nr
Match: XP_040369229.1 (uncharacterized protein LOC112183841 [Rosa chinensis])

HSP 1 Score: 63.9 bits (154), Expect = 8.9e-07
Identity = 39/113 (34.51%), Postives = 54/113 (47.79%), Query Frame = 0

Query: 4   RELLFVYERASGQTINYEKSVVAFSPNTEDDSQQYISQ---------------------- 63
           + +L VYERASGQ IN EKS V F+ N   D++  ++                       
Sbjct: 383 KSILNVYERASGQRINLEKSSVVFNRNVHPDTKANLASMEEPCVEDHGKYLGLPLHGWRL 442

Query: 64  --EPNTLLSTVLKGRYFPQSTFLEAELRSSSSFIWRS-------YGVGTYWHV 86
              PN+LLS +LK RYFP  +F +A++  S S+ WRS          G +W V
Sbjct: 443 ITNPNSLLSRLLKARYFPNGSFWDADMGDSPSYAWRSIMEARTVLQAGLFWQV 495

BLAST of Lag0022208 vs. NCBI nr
Match: KAA3481221.1 (reverse transcriptase [Gossypium australe])

HSP 1 Score: 61.2 bits (147), Expect = 5.8e-06
Identity = 35/96 (36.46%), Postives = 50/96 (52.08%), Query Frame = 0

Query: 3   VRELLFVYERASGQTINYEKSVVAFSPNT------EDDSQQYISQEPNTLLSTVLKGRYF 62
           ++E L  YE+ SGQ +N+ KS + FS NT      E      I    ++L++ VLK +YF
Sbjct: 510 LKETLKQYEQCSGQCVNFNKSTIFFSSNTLEGVKWETSEGWRIMNNADSLVAKVLKAKYF 569

Query: 63  PQSTFLEAELRSSSSFIWRSYGV-------GTYWHV 86
           P   FL + L +SSS+ W+S          G  WHV
Sbjct: 570 PNDQFLNSRLGNSSSYTWKSIWAAKDVLRKGLVWHV 605

BLAST of Lag0022208 vs. NCBI nr
Match: KAA3453673.1 (reverse transcriptase [Gossypium australe])

HSP 1 Score: 61.2 bits (147), Expect = 5.8e-06
Identity = 38/118 (32.20%), Postives = 56/118 (47.46%), Query Frame = 0

Query: 3   VRELLFVYERASGQTINYEKSVVAFSPNTEDDSQQYISQE-------------------- 62
           ++++L  YE+ S Q +N+EKS V FS NT++  +  +SQE                    
Sbjct: 368 LKQILMEYEKNSEQCVNFEKSTVFFSTNTQERERMAVSQENGGIGFRNLANFNVALLAKQ 427

Query: 63  -------PNTLLSTVLKGRYFPQSTFLEAELRSSSSFIWRSYGV-------GTYWHVG 87
                  P++LL+ VLK +Y+P+S F EA L +  S  WRS          G  W VG
Sbjct: 428 DWRLINYPDSLLAKVLKAKYYPKSNFAEARLGNLPSLTWRSVWAARGLLDKGMCWRVG 485

BLAST of Lag0022208 vs. NCBI nr
Match: XP_030497722.1 (uncharacterized protein LOC115713379 [Cannabis sativa])

HSP 1 Score: 60.5 bits (145), Expect = 9.9e-06
Identity = 40/125 (32.00%), Postives = 58/125 (46.40%), Query Frame = 0

Query: 1   MVVRELLFVYERASGQTINYEKSVVAFSPNTEDDSQQ----------------------- 60
           + ++E+  VY +ASGQ IN+ KS + FSPNT  D +                        
Sbjct: 261 LALQEVFDVYSKASGQAINFAKSSILFSPNTLSDIRATLFNAFNLEDRPFICFRSLVHFN 320

Query: 61  ---------YISQEPNTLLSTVLKGRYFPQSTFLEAELRSSSSFIWRS-------YGVGT 87
                     I + P++LL+ VL  RYFP+S+FL+A+   + SF WRS         +G 
Sbjct: 321 QAMLAKQAWRIFKNPSSLLAQVLHARYFPRSSFLQAKSGHNPSFSWRSILWGRELLNLGL 380

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
OMO52016.14.0e-0744.44reverse transcriptase [Corchorus capsularis][more]
XP_040369229.18.9e-0734.51uncharacterized protein LOC112183841 [Rosa chinensis][more]
KAA3481221.15.8e-0636.46reverse transcriptase [Gossypium australe][more]
KAA3453673.15.8e-0632.20reverse transcriptase [Gossypium australe][more]
XP_030497722.19.9e-0632.00uncharacterized protein LOC115713379 [Cannabis sativa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0022208.1Lag0022208.1mRNA