Lag0022131 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0022131
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionDNA-directed RNA polymerase subunit
Locationchr7: 19092078 .. 19100371 (+)
RNA-Seq ExpressionLag0022131
SyntenyLag0022131
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAGCTTGGAGTCTTCTGCTATCGCTGTGGATTGGTGGGCAACAACGAAGGATTATGAATTTCATCCGAATACTCCAGACAACGAGCTTCAATATATTCTCTTGCTAAGACATAATGGGATAATGAAAGGTGTTGGGAAAGATTTGGGGAGAATGTAGAGATATCTAGAGGGTTGATTTCAATTATACCCTTGAATTTTCAAAAGTTTCATTTTAGCCCTTAAAGTTTGAAGTTTGTTTCAAAATGACCTATGAAGATTTTATTTTATTTTTGTCAAAATCATAGATGAAAAATGACATGTTTGCATATGTATTGTTGCTTATATGAATACATTTGAACACATACGTCGAAAAAACAATTAAAACACATGCAAACACATCATTTTTTTGCCAATAAATTTAACGGAAAAGTCTATCTTTTTGAAACAAACTTCAAATTTAGGATTAAAATGAAACTTTTGAAAGTTGAGAGATAATTGAAACCAACCCCATAATTGAAGGGTATTTTTTGATAATTTAACCTTAATTTATAGGCTAAATTATAAGAAATACCCCTGAACTTTGGGGTTTGTTTCAAAAATACCTCTGAACTTTAAAAAGTTTAAAAAATACCCCTGAACTTTGAAAAACGTTTCAAAAATGCCATTGCCGTTAATTTTGGATGGAAACCGTTAAAGTTTTAGTTTCAAAAATACCCTTGAACTTTCAAAAAAATTTCAAAAATACCCTTATTGAAAATTTTTTCTTCTTTTTTCTCTTCTCACCGTAAATTCTTTCTCCATGAAAATTAATGCAAAACTTTGCTTATAAAGGTTGTGTACAACACAATACCAGATAAAAACAGACTTTGAAATCGAGTTTTCTCTCTTAAAAAGCGTAAAGAAGATAAGTGTGAGAAAACAATATATATATATATATATATATATTATTTCCTTTTTGTTTCCTAAAAAAAATTATTTCCTTTTTCCTCTCTTTGTTTGTGTATGTTAGTGATAAGAAGAAGTTTATAAAATTAATTAATCAAAAGTTTTATATATGATTTTGTTATTATTGATATTTAAAAATTGTTAGAGCTCGTATACAACAATAGTTTCATTTATTTTTCATAATATAAATATAAAGAAAGTTAATGGGTAATAGTTGGTGAGAAAATAATATTGAAAAGTTCACACATGTAGAATTTCAAGAACAAAACAAAAGTCATCTTGAAATTTCGATACAGAAATCTTTCCTTCTCCCAAGAAGGAAAAAAAACATTTTTCAATAAGGGTATTTTTGAAATTTTTTCTAAAGTTCAAGGGTATTTTTGAAACTAAAACTTTAACGGTTTCCATCCAAAATTAACGACAAGGACATTTTTTAAACATTTTTCAAAGTTCAGGGGTATTTTTTAAACTTTTTAAAGTTTAGAGGCATTTTTGAAACAAACCCCAAAGTTTAGGGATATTTTTTATAATTTAGCCTAATTTATACATACCATTGAAAATTAACATATTAATTAGAAAAGGTTTAAGGAAAAAAAATCTATCTAAACCCCAATAAATTCCACATCTGTTTTTCTTTCTTTCTTTTTAAGAAGCTCCAGCTCACTTTTTTTTATAGTCGACCATGTAAAATAAAATAAAAATGAATAAACGAAGAATTACCTAGCTGACGCCACTTCTTCTTCACGTTGTTTCCTCCTCCGATTCAGCAGCTCAGTGTGTCGCCGCGTCTCTCCCGTTCACTGCTGCCGCCGCCGTCTTCTTTCTTCCGCTCGTGCCGCCACCACCGTCGTCTTTCTTCCGTTCGTGCCGCCGCAGCCTCCCTCGATTTTATACTCCCTTGCTGTTACTGGTATTTTTCGATCTACGTCTTTCTGTTCCTTGAAAAACACAAATTAGAAATTGTCTAATGAAAGAATAGTGGAGTTTTTTAAATTCTTTTTTTATAATAACAATAGTCGAATAGTAACGAAAAAACGGGAACAAAAACGGGAGAGACTGTTTTCGACGGCACAATTGGTATATATACGATGGCAAGATGGTTTTCACTGCATTCTTGGCAGAGAAAAGGAATTGGATCGAAAAAAAAAAACTAAACTCGAAGGTCTTGCATTTGTTTGTGAATTGTTATTCCTTCCATTCGGTAACTCAAATTAGGACTTAGTTTGTCGGTAGATTGTGATATATGTCGATGAGTTTATTGGATTAAAATATTTTGTAGAGAGCTGATGAGTTGTTTTCTGAAAATTGAAGTTTGTCTCTTGAAATTCTCTAATGAATAGTGCTTGGAATGTGAAGAGTCATAGGTTTTGTGTAATAAAAGTAAAGGGGTACATTAATTAATAATGTATAGGAAATTGAAAACCAGTTTGGTTGTGGGGCAACTATCTTGATCCAACACACTTTCTCTTTTTCATCTTGCATTTTGTCGTGATCCCAATATATCCAATGAAATTAGCTAAAATGGGCATATGTTTAAAATTTGGAGGGTGAAATGGAGAAATAAAGTTTCGCCTTAAAGCCACTTTTATATATAGTATAGATATAGATAGATAGATATAGATATAGATAGACTCTTCATTGCTTGCTTGCTTCGCTGATCTCTCACACCCTCTGTAAGTCAGTTTTGTTCAAGTTTATATGCCCTTGTAAATTATCCTCCCCATTTCTTTGCTAAGGCACTGGATTTGGATAAATCTTCTCTTCAGATTACATTCATTTGATCAAACAAATCACCCAACACTTCCTCGTCAATGATATGTTCCTTCTCACATAAAAACGTGATTTACGAAGATATTGCATTTATTTGAGAGGCGTCTTATTTGTTGCATTCAGTTTCTTATGTTTTATGATATCTGTTGAGTGGGTGGATTATGCGTTGATATGTCATATGCATTGCATCAGATTATTGATTGATAGAACATGGATTTGTTTTAGGACCTAGCTAATGGAGTTTTGCCCAACTTGTGGGAACATGCTGCAATTTGAGTTGCCCAATATGGGTAAATCTTCTAGATTCTTTTGCCCGACTTGTCCATATGTGTCTTACTTGGAGAATAGGGTATGTGACACTGAAATTTCTTTATTATAGTAGTAAGGGCTCAAGTTGTTTAACTTCCCTCTTCTTGCCTCTTAATTTCTTATATGGTGATTTAAGGAGTGTATTCTCTTGGTTCTACTATTCAGGTAAAGATCAAAAGAAAGCAACATTTGGTGAAAAAGGAATTAGAACCCATAATCTCTGATGACGATATGAAAAATGCAGCTCAAACCGAAGGTATACATCTTTCCTTTCTAACTGTGTATTTATTTATTTATTTTCCCTTTCTGTATTCTCAGTGCTCAGTTTTTATGTTTTTCAATTAAATTTATACGTGATGGAGTCAGGCAAAAAATTTAATCAAATAAGTACCGCATTGATTCACCTTTAAGATCATACAAGTGGTTATATATTGAATATGGTAATGGTAGGCAAACTAGTCTGGCAGTTCTATTTCCTTTGATTAACTGAAATTTACAAAGGGTCTAAGGCACCAAAAGACAACAAGTAGCTATAAAGAATCCCAATGACTGAAGCCGTTACAGAGCTAGAATAATTAAAAAAAAAAAAATGTCTGGGAGCCCAAGAAGAACCAACAAAAATGACACGGTCCCAAATTTCTTCCCTAGGAACAAAATCTTTGAAGACTCTTCTGAATGGCAGTGATACCATTAACTGGAAAAACATTTTTCTTAGCTTTAAACCTCAAAAAAGTTTAAAAATGAAGTCCTTTAAGCTATTAGGCACACTAAACTTCAAAACAATTCCATCAAAGCAATCTACTAGACTGACACTCTAGAAAACTGTGGAGAGTCGATTCTTCTCTCCTACAAAGGGCACACCAACTGAGCCAGAGGAATAATGAAGCTTTGTCCTTATGATAACATGGTTAGAATCACAATGGGCATGTTAATTCAGTTTTGAAGGAGAATTTTATATGTCTCATTCAAAAGAAAGATGTGGTTGTTACTGTCAAAAAAAAAAAAAAAATGACGGATTTTGCAGAGAAAGACAGACCATATGAGAAATTTTCACTTTTTGGGAATATTAGACTTCCAAATAGTCTTACTTACACAACTTCATTGCTTATCCTGTCTGGGGACAATGGATCAATAATGATAGTTGACAGAGGAAAACCCTGTAGGAGCGAGGCCTCATATTCTAGAGTATTGGCTGAGGGAATCATGGATGATATGTAAAGGACTGTCGCTCCTAAATTTATATGTAGAAAAGCCCTCTTCTAAACCTCAAATTACAGTAAAGGATATCCTTATCCCACATGTTGAAATGCCCTTTCAGATAAGGGGTTTGTCAGAAGAGGGTTTATAAATAAAGTGGATTGGACGGGTTATGGGGGGAGGAAACTGGAAATAGTTTTGTGGGAGAGATACCCCGTCCATAAGGCTATCGCACTATAATTTCGGCCCTATCTTCTTACTTTCCAATCTCAAGTTCTGTCACTTGAATCTTTTTATAACCCGACAGAAGCCACCACCATCCAGCTGAAAAGTAGTACTTCGTTTGACAAGGGGAGCTAACTTTTCAGCGGACTTCCAACGGCCTTTAGCTATAGCATAAGAGGAACCCAATATGAATTGTCCAGGGTAATCTCTCCCACTTTTACTTGAATAATTTTGGGCTAAAGAAAATTGAGTTTCTATCCCTTAACCACTTACAAAGGAGAGCAAACCTTTGCCTAATATTACCAATATTTAGGCGTCCATTTGATAAGCATAGGAGACCATGTTCCATGTACCCATATCTTTGGCAATCTAATCCTCCCAGAAGAAGTTTCAGATGTATATCTCAATTGTTGCAGCCACTTTATACCGTAAACACGGAAAGATAATGCAGGAGAAAATTAACAAGGGCCAGTTGAGCCAACGTTAGACCCCCTCCCTTGTAATGGTGGCTGCATTCCACGTCATTAACTCAGACAAATTAATTCTTGCCTCACTCAACTGTTTTGATAAATTTATAGAAAGTTGGAAAGTAAATTAAAAAGCTTCTGAATTTTAAGGAGATTGGAGATTTTACACCATATTATCTGCAAGTTGTAAAATAATGAGATGAATCTTAATTTCCCTAGGAAAAAAACTTCAATATTTTCCATCATCATCATACCCAAGGAGAGAAATCTGCTCAAACACTCAACCACCGAGACACGATAGAGGGGAGATAAGACCATCTCTCAGATTTGTTTCCATTGAATTGTTTTTTCCCTCTTGTTTTCTTTGTTGTTCTTGTTTCACTCCCTTGTGGGGTTTGTACCCTTTGAGCATTAGTCTCTTTTCATTTATTCAATGAAAAGTTTCGTTTCTTGTTAAAAAAAAAAATTAATCTCTCTAGAATCAAGGCAAGGAAATCCCATTCCACTTTGTTATAGGCCTTCTCTAAATCAAGCTTGAAGATGAGTCATTTCTTTCCTTTTTCCCTCTAACTCGTCCATTTCATTTGCAATTGAAACAGGATCATCCTTTCATGTATTGTAATCTTGAATAGATGATTTACCTCTTCAATCTTTTGACAGACAGTAAGAAAAGTAGCTTTTAGTCCGTTGTCTCGGCATCTTACTTAGTGAACCTCTGGTGTGATGAAGATGTATGAATCAATCCAAACTGGAAATTAGATTCATAGAGTGGCTTGCCCCCAATGAGTTATCAGTTATCCTCATAACAGAGATTGGTGCAGGAGCATTTTGTAGCCTTCAAGGCTTATATGTTTCAACTTCTGGCAAATGGGAATCCCGACACGTTGAGGTTTATAGTCTGTGAATACACATTTAATAAGTTTTGGGAAGGGGTGGAGGAGGGTGGTGGAGCCCATCTTGTTAAGTGGGAAGTGGTTTCTAAGCTGACAGATGTTGGGGATTGGGTATTGGGAACCTTAGACCACGTAAACCAGGTTCTTTTGGTGAAGTGGTTGTGGCATTTCTTCTTTGAGCAAGACACTCGGTGGTATAGGGTCGTTGTGAGTAAGTATGGGTCTCATCTTTTTGAATGGATCTCTGGTCAACGATTTAAGGGTTCTAGCAAAAACCTCTAGACTGCAATTCCTTCGAGGGTTCCTTTGTTTTCTCATCATATTCAGTGCTCTACCGGGGATGGTTTGAAAACTTACTTTTGGGAGGATTCCTGAGTGGGGGATAGATTCTTGTGTTCCCTTTTTCCTCATCTTTATAATCTGTTTGAGAAGAGGCTGCATTCAGTTGCCTCTATCTTACCCTCTCACAACCCTGCCTCCCTCTCCTTGGGCTTCAGTCATCCTCTCACCAACTGCAAGGCAACTGATCTTGTCAGCCTCCTCTTGATTCTTTCAAATCAGGTCACTCACCTTGGGAGACGAGACTCGCGTGTCTGGATCCCTAGACTCTTCAAAGGTTTCTCTTGTAACTCTTTTTTCCAAATTTTTTGTGCTTCTCCCTCCTCCTAGGGTGTATGTGCCTTCTATTCTCTTTGGAAGGTTGTGGGGGGATTGTTCATTTGCATCTTCTCTCTGGAGCCGCTTCTTTTGTTCCTTTGAGGTGTCCTCCGTTCGTAATAGAGATTGTGGCTCCATGATTGAGGAAATTCTTCTCAATTCTCCCTTTCGTGATAAAGGAAAGTTTTTATGGCAAGCTTGCTTCTTTGCTATTCCGTGGAATATTTGGCTTGCAAGGAATGGTTGTATTTTTAGAGGGACTGAGAGATCGAGGGAGGATCTTTGGGAGTTGATTAGACTTAGCACTTCTTTATGGACGTCTGTTAGTCGGATCTTTGTAATTACTCTTTGGAGCTTATTCTCTTGGGTTGAGATTCTCTTTCTTGTAATTAGGTTTTGAGGGCCTTGGCTTGTTGGCTTGTATCTAGTTCTCGGGACCTGTTTTTTCTACTCCCTTGTTCTCCCTTTCATTCTTCTTAATGAAAGTTCGGTTTCTTATTAAAAAAAAAAACATTTCAGAAGTTTTGCAGAATAGGGAGTGCGATGCACACAGAAAAGCAACAGTTATTAACCATGTTAATTTTTTTCATGGACTTTTGGATAGTTCACAGCCTGCAAGGTTGGAGATGGTTTTGATTTTCTTCGGTATTCTGATTAGGAATATGCTTTGGCCATCAGTGCATGGAAGACACTAGTTGACTTGTCTCATTATGTATTGCTGCTTATCTTTGTTTGACGACCTAGTAAAATTGATAGACCGTTGGTTATGGACAACCTATAATAAAGAATTAATAAATATGGAAAGTTTATATATATATATATATATATATATATATATATATATTTTTGATAAGAAACAATTTCATTAATGTATGAAATTTACAAAAGGGATACGAGATCCATAGAGATTACAAAAGACTCTCCCAACTATTAATGAGGGAGGCGTATGCGTATGAAGCTAACATAGGAGAGAGTTTACACCAAGATATAGCATAATAGATAACAGAATCGAAAAAGGCTTCAAAAGTGAGATCTTTGTCTTGGAAGATTCTTCTATTTCTTTCTTTCCATAAATTCCAAAAGAAGGCTCGGTTGATATTCATCCAAAGGAGAGCTTTGATATTTTTGAAGGGATGGTCATTCAGAACCGATGCAAGGAGAACATCCATATTACCCGAGATAACCAGGGGCCATCCAAAAGACTTAATGATTTTGGACCAGTATCTCTGAGCGAAGGGGCAAAGGGCAAAGATGTGGCCTTGACATTCGTTGTCACTTTTGCAAAGAAGGCATTTACCAGGCGAAAGAGACATGTAAGGCATGCGTCTTTGCAAAACATCATTGGTATCGATGGCTTTGTGGGCTACTTCCCATAAGAAAATTTTAATTTTCTTTGGGTAATTTTCTTTCGAGATGGTCTTTGCCAAGGATGGCTCAATGAAGTTGTTTGTACCCGCCATGTCATTGATGAGAGATTTTGTTGAGAAGGATCCGCTTGGACTAAAGGGCCATTTCCATGTGTCTTCTATGTGGATAAAGTGATGTTATCAAGTTCAACACTAAGCTCAACCCATTCTTCAGTTTCAGCGTCTTTTAAATTTCTTTCCAGATTGAGGTCCCAAAAATTGTTAGGTGCATTCTTACAATGAGAAAGCTGATAAAGAAGGGGAAACCTGGATGCCAGAGGGATACTATTAATCCATGAGTCAGTCCAAAAGGGTATCACCTCCATTTCCAAGCTGATGCTCAATGCGGCAGGTGATGAGGTTGTGCTGTTGGGCAATATTCCTCCATGGGCCTTTAAAGTTGGCTGGTGTGGCCCTTTATGGAAAGTTTATGGCCTTTAA

mRNA sequence

ATGAAAAGCTTGGAGTCTTCTGCTATCGCTGTGGATTGGTGGGCAACAACGAAGGATTATGAATTTCATCCGAATACTCCAGACAACGAGCTTCAATATATTCTCTTGCTAAGACATAATGGGATAATGAAAGCAGCTCAGTGTGTCGCCGCGTCTCTCCCGTTCACTGCTGCCGCCGCCGTCTTCTTTCTTCCGCTCGTGCCGCCACCACCGTCGTCTTTCTTCCGTTCGTGCCGCCGCAGCCTCCCTCGATTTTATACTCCCTTGCTGTTACTGCTAATGGAGTTTTGCCCAACTTGTGGGAACATGCTGCAATTTGAGTTGCCCAATATGGGTAAATCTTCTAGATTCTTTTGCCCGACTTGTCCATATGTGTCTTACTTGGAGAATAGGGTAAAGATCAAAAGAAAGCAACATTTGGTGAAAAAGGAATTAGAACCCATAATCTCTGATGACGATATGAAAAATGCAGCTCAAACCGAAGGCGTCCATTTGATAAGCATAGGAGACCATGTTCCATGTACCCATATCTTTGGCAATCTAATCCTCCCAGAAGAAGTTTCAGATAGATTGGTGCAGGAGCATTTTGTAGCCTTCAAGGCTTATATGTTTCAACTTCTGGCAAATGGGAATCCCGACACGTTGAGGTTTATAGTCTGTGAATACACATTTAATAAGTTTTGGGAAGGGGTGGAGGAGGGTGGTGGAGCCCATCTTGTTAAGTGGGAAGTGGTTTCTAAGCTGACAGATGTTGGGGATTGGGTATTGGGAACCTTAGACCACGTAAACCAGGTTCTTTTGGTGAAGTGGTTGTGGCATTTCTTCTTTGAGCAAGACACTCGGTGGTCACTCACCTTGGGAGACGAGACTCGCGTGTCTGGATCCCTAGACTCTTCAAAGGTTTCTCTTGTAACTCTTTTTTCCAAATTTTTTGTGCTTCTCCCTCCTCCTAGGGTGTATGTGCCTTCTATTCTCTTTGGAAGGTTGTGGGGGGATTGTTCATTTGCATCTTCTCTCTGGAGCCGCTTCTTTTGTTCCTTTGAGGTGTCCTCCGTTCGTAATAGAGATTGTGGCTCCATGATTGAGGAAATTCTTCTCAATTCTCCCTTTCGTGATAAAGGAAAGTTTTTATGGCAAGCTTGCTTCTTTGCTATTCCGTGGAATATTTGGCTTGCAAGGAATGGTTGTATTTTTAGAGGGACTGAGAGATCGAGGGAGGATCTTTGGGAGTTGATTAGACTTAGCACTTCTTTATGGACGTCTGAATATGCTTTGGCCATCAGTGCATGGAAGACACTAGTTGACTTGTCTCATTATAACCGATGCAAGGAGAACATCCATATTACCCGAGATAACCAGGGGCCATCCAAAAGACTTAATGATTTTGGACCAGTATCTCTGAGCGAAGGGGCAAAGGGCAAAGATGTGGCCTTGACATTCGTTGTCACTTTTGCAAAGAAGGCATTTACCAGGCGAAAGAGACATGTAAGGCATGCGTCTTTGCAAAACATCATTGGTGATGAGGTTGTGCTGTTGGGCAATATTCCTCCATGGGCCTTTAAAGTTGGCTGGTGTGGCCCTTTATGGAAAGTTTATGGCCTTTAA

Coding sequence (CDS)

ATGAAAAGCTTGGAGTCTTCTGCTATCGCTGTGGATTGGTGGGCAACAACGAAGGATTATGAATTTCATCCGAATACTCCAGACAACGAGCTTCAATATATTCTCTTGCTAAGACATAATGGGATAATGAAAGCAGCTCAGTGTGTCGCCGCGTCTCTCCCGTTCACTGCTGCCGCCGCCGTCTTCTTTCTTCCGCTCGTGCCGCCACCACCGTCGTCTTTCTTCCGTTCGTGCCGCCGCAGCCTCCCTCGATTTTATACTCCCTTGCTGTTACTGCTAATGGAGTTTTGCCCAACTTGTGGGAACATGCTGCAATTTGAGTTGCCCAATATGGGTAAATCTTCTAGATTCTTTTGCCCGACTTGTCCATATGTGTCTTACTTGGAGAATAGGGTAAAGATCAAAAGAAAGCAACATTTGGTGAAAAAGGAATTAGAACCCATAATCTCTGATGACGATATGAAAAATGCAGCTCAAACCGAAGGCGTCCATTTGATAAGCATAGGAGACCATGTTCCATGTACCCATATCTTTGGCAATCTAATCCTCCCAGAAGAAGTTTCAGATAGATTGGTGCAGGAGCATTTTGTAGCCTTCAAGGCTTATATGTTTCAACTTCTGGCAAATGGGAATCCCGACACGTTGAGGTTTATAGTCTGTGAATACACATTTAATAAGTTTTGGGAAGGGGTGGAGGAGGGTGGTGGAGCCCATCTTGTTAAGTGGGAAGTGGTTTCTAAGCTGACAGATGTTGGGGATTGGGTATTGGGAACCTTAGACCACGTAAACCAGGTTCTTTTGGTGAAGTGGTTGTGGCATTTCTTCTTTGAGCAAGACACTCGGTGGTCACTCACCTTGGGAGACGAGACTCGCGTGTCTGGATCCCTAGACTCTTCAAAGGTTTCTCTTGTAACTCTTTTTTCCAAATTTTTTGTGCTTCTCCCTCCTCCTAGGGTGTATGTGCCTTCTATTCTCTTTGGAAGGTTGTGGGGGGATTGTTCATTTGCATCTTCTCTCTGGAGCCGCTTCTTTTGTTCCTTTGAGGTGTCCTCCGTTCGTAATAGAGATTGTGGCTCCATGATTGAGGAAATTCTTCTCAATTCTCCCTTTCGTGATAAAGGAAAGTTTTTATGGCAAGCTTGCTTCTTTGCTATTCCGTGGAATATTTGGCTTGCAAGGAATGGTTGTATTTTTAGAGGGACTGAGAGATCGAGGGAGGATCTTTGGGAGTTGATTAGACTTAGCACTTCTTTATGGACGTCTGAATATGCTTTGGCCATCAGTGCATGGAAGACACTAGTTGACTTGTCTCATTATAACCGATGCAAGGAGAACATCCATATTACCCGAGATAACCAGGGGCCATCCAAAAGACTTAATGATTTTGGACCAGTATCTCTGAGCGAAGGGGCAAAGGGCAAAGATGTGGCCTTGACATTCGTTGTCACTTTTGCAAAGAAGGCATTTACCAGGCGAAAGAGACATGTAAGGCATGCGTCTTTGCAAAACATCATTGGTGATGAGGTTGTGCTGTTGGGCAATATTCCTCCATGGGCCTTTAAAGTTGGCTGGTGTGGCCCTTTATGGAAAGTTTATGGCCTTTAA

Protein sequence

MKSLESSAIAVDWWATTKDYEFHPNTPDNELQYILLLRHNGIMKAAQCVAASLPFTAAAAVFFLPLVPPPPSSFFRSCRRSLPRFYTPLLLLLMEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEGVHLISIGDHVPCTHIFGNLILPEEVSDRLVQEHFVAFKAYMFQLLANGNPDTLRFIVCEYTFNKFWEGVEEGGGAHLVKWEVVSKLTDVGDWVLGTLDHVNQVLLVKWLWHFFFEQDTRWSLTLGDETRVSGSLDSSKVSLVTLFSKFFVLLPPPRVYVPSILFGRLWGDCSFASSLWSRFFCSFEVSSVRNRDCGSMIEEILLNSPFRDKGKFLWQACFFAIPWNIWLARNGCIFRGTERSREDLWELIRLSTSLWTSEYALAISAWKTLVDLSHYNRCKENIHITRDNQGPSKRLNDFGPVSLSEGAKGKDVALTFVVTFAKKAFTRRKRHVRHASLQNIIGDEVVLLGNIPPWAFKVGWCGPLWKVYGL
Homology
[Close]
BLAST of Lag0022131 vs. NCBI nr
Match: KAG6597716.1 (DNA-directed RNA polymerase III subunit RPC10, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 147.9 bits (372), Expect = 2.5e-31
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 94  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 153
           MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD
Sbjct: 38  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 97

Query: 154 MKNAAQTE 162
           MKNAAQTE
Sbjct: 98  MKNAAQTE 105

[Close]
BLAST of Lag0022131 vs. NCBI nr
Match: KAG7029162.1 (DNA-directed RNA polymerase III subunit RPC10, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 147.9 bits (372), Expect = 2.5e-31
Identity = 77/103 (74.76%), Postives = 81/103 (78.64%), Query Frame = 0 

Query: 62  FFLPLVPPPPSS---FFRSCRRSLPRFYTPLLLLLMEFCPTCGNMLQFELPNMGKSSRFF 121
           + L L  PPP S   F    R S+ +  +      MEFCPTCGNMLQFELPNMGKSSRFF
Sbjct: 9   YLLFLYCPPPDSLLGFNSLARHSVRKRLSFGRTWRMEFCPTCGNMLQFELPNMGKSSRFF 68

Query: 122 CPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTE 162
           CPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTE
Sbjct: 69  CPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTE 111

[Close]
BLAST of Lag0022131 vs. NCBI nr
Match: XP_038903069.1 (DNA-directed RNA polymerase III subunit RPC10-like [Benincasa hispida])

HSP 1 Score: 147.9 bits (372), Expect = 2.5e-31
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 94  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 153
           MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD
Sbjct: 1   MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 60

Query: 154 MKNAAQTE 162
           MKNAAQTE
Sbjct: 61  MKNAAQTE 68

[Close]
BLAST of Lag0022131 vs. NCBI nr
Match: XP_004141147.1 (DNA-directed RNA polymerase III subunit RPC10 [Cucumis sativus] >XP_008465337.1 PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like [Cucumis melo] >XP_008465338.1 PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like [Cucumis melo] >KGN59770.1 hypothetical protein Csa_002120 [Cucumis sativus])

HSP 1 Score: 147.9 bits (372), Expect = 2.5e-31
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 94  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 153
           MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD
Sbjct: 1   MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 60

Query: 154 MKNAAQTE 162
           MKNAAQTE
Sbjct: 61  MKNAAQTE 68

[Close]
BLAST of Lag0022131 vs. NCBI nr
Match: XP_022932603.1 (DNA-directed RNA polymerase III subunit RPC10-like [Cucurbita moschata] >XP_022932604.1 DNA-directed RNA polymerase III subunit RPC10-like [Cucurbita moschata] >XP_022972319.1 DNA-directed RNA polymerase III subunit RPC10-like [Cucurbita maxima] >XP_022972320.1 DNA-directed RNA polymerase III subunit RPC10-like [Cucurbita maxima] >XP_023539106.1 DNA-directed RNA polymerase III subunit RPC10-like [Cucurbita pepo subsp. pepo] >XP_023539107.1 DNA-directed RNA polymerase III subunit RPC10-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 147.9 bits (372), Expect = 2.5e-31
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 94  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 153
           MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD
Sbjct: 1   MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 60

Query: 154 MKNAAQTE 162
           MKNAAQTE
Sbjct: 61  MKNAAQTE 68

[Close]
BLAST of Lag0022131 vs. ExPASy TrEMBL
Match: A0A6J1IB59 (DNA-directed RNA polymerase subunit OS=Cucurbita maxima OX=3661 GN=LOC111470892 PE=3 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.2e-31
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 94  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 153
           MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD
Sbjct: 1   MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 60

Query: 154 MKNAAQTE 162
           MKNAAQTE
Sbjct: 61  MKNAAQTE 68

[Close]
BLAST of Lag0022131 vs. ExPASy TrEMBL
Match: A0A1S3CQ50 (DNA-directed RNA polymerase subunit OS=Cucumis melo OX=3656 GN=LOC103502981 PE=3 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.2e-31
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 94  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 153
           MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD
Sbjct: 1   MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 60

Query: 154 MKNAAQTE 162
           MKNAAQTE
Sbjct: 61  MKNAAQTE 68

[Close]
BLAST of Lag0022131 vs. ExPASy TrEMBL
Match: A0A6J1EXG3 (DNA-directed RNA polymerase subunit OS=Cucurbita moschata OX=3662 GN=LOC111439113 PE=3 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.2e-31
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 94  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 153
           MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD
Sbjct: 1   MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 60

Query: 154 MKNAAQTE 162
           MKNAAQTE
Sbjct: 61  MKNAAQTE 68

[Close]
BLAST of Lag0022131 vs. ExPASy TrEMBL
Match: A0A0A0LCM4 (DNA-directed RNA polymerase subunit OS=Cucumis sativus OX=3659 GN=Csa_3G844880 PE=3 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.2e-31
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 94  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 153
           MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD
Sbjct: 1   MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 60

Query: 154 MKNAAQTE 162
           MKNAAQTE
Sbjct: 61  MKNAAQTE 68

[Close]
BLAST of Lag0022131 vs. ExPASy TrEMBL
Match: A0A6J1DGL3 (DNA-directed RNA polymerase subunit OS=Momordica charantia OX=3673 GN=LOC111020260 PE=3 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 6.6e-30
Identity = 64/68 (94.12%), Postives = 67/68 (98.53%), Query Frame = 0 

Query: 94  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 153
           MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYV +LENRVKIKRKQHL+KKELEPIISD+D
Sbjct: 1   MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLIKKELEPIISDED 60

Query: 154 MKNAAQTE 162
           MKNAAQTE
Sbjct: 61  MKNAAQTE 68

[Close]
BLAST of Lag0022131 vs. TAIR 10
Match: AT4G07950.1 (DNA-directed RNA polymerase, subunit M, archaeal )

HSP 1 Score: 94.0 bits (232), Expect = 4.0e-19
Identity = 42/68 (61.76%), Postives = 55/68 (80.88%), Query Frame = 0 

Query: 94  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 153
           MEFCPTCGN+L++E    G SSRFFC TCPYV+ +E RV+IK+KQ LVKK +EP+++ DD
Sbjct: 1   MEFCPTCGNLLRYE---GGGSSRFFCSTCPYVANIERRVEIKKKQLLVKKSIEPVVTKDD 60

Query: 154 MKNAAQTE 162
           +  AA+TE
Sbjct: 61  IPTAAETE 65

[Close]
BLAST of Lag0022131 vs. TAIR 10
Match: AT1G01210.1 (DNA-directed RNA polymerase, subunit M, archaeal )

HSP 1 Score: 90.5 bits (223), Expect = 4.4e-18
Identity = 39/68 (57.35%), Postives = 55/68 (80.88%), Query Frame = 0 

Query: 94  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 153
           MEFCPTCGN+L++E    G +SRFFC TCPYV+Y++ +V+IK+KQ LVKK +E +++ DD
Sbjct: 1   MEFCPTCGNLLRYE---GGGNSRFFCSTCPYVAYIQRQVEIKKKQLLVKKSIEAVVTKDD 60

Query: 154 MKNAAQTE 162
           +  AA+TE
Sbjct: 61  IPTAAETE 65

The following BLAST results are available for this feature:
BLAST of Lag0022131 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6597716.12.5e-31100.00DNA-directed RNA polymerase III subunit RPC10, partial [Cucurbita argyrosperma s... [more]
KAG7029162.12.5e-3174.76DNA-directed RNA polymerase III subunit RPC10, partial [Cucurbita argyrosperma s... [more]
XP_038903069.12.5e-31100.00DNA-directed RNA polymerase III subunit RPC10-like [Benincasa hispida][more]
XP_004141147.12.5e-31100.00DNA-directed RNA polymerase III subunit RPC10 [Cucumis sativus] >XP_008465337.1 ... [more]
XP_022932603.12.5e-31100.00DNA-directed RNA polymerase III subunit RPC10-like [Cucurbita moschata] >XP_0229... [more]
BLAST of Lag0022131 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Lag0022131 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1IB591.2e-31100.00DNA-directed RNA polymerase subunit OS=Cucurbita maxima OX=3661 GN=LOC111470892 ... [more]
A0A1S3CQ501.2e-31100.00DNA-directed RNA polymerase subunit OS=Cucumis melo OX=3656 GN=LOC103502981 PE=3... [more]
A0A6J1EXG31.2e-31100.00DNA-directed RNA polymerase subunit OS=Cucurbita moschata OX=3662 GN=LOC11143911... [more]
A0A0A0LCM41.2e-31100.00DNA-directed RNA polymerase subunit OS=Cucumis sativus OX=3659 GN=Csa_3G844880 P... [more]
A0A6J1DGL36.6e-3094.12DNA-directed RNA polymerase subunit OS=Momordica charantia OX=3673 GN=LOC1110202... [more]
BLAST of Lag0022131 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G07950.14.0e-1961.76DNA-directed RNA polymerase, subunit M, archaeal [more]
AT1G01210.14.4e-1857.35DNA-directed RNA polymerase, subunit M, archaeal [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001529DNA-directed RNA polymerase, M/15kDa subunitSMARTSM00661rpol9cneucoord: 95..149
e-value: 7.0E-8
score: 42.2
IPR029401Nudix hydrolase, N-terminalPFAMPF14803Nudix_N_2coord: 96..127
e-value: 1.4E-6
score: 28.2
NoneNo IPR availableGENE3D2.20.70.10coord: 93..127
e-value: 5.8E-6
score: 27.9
NoneNo IPR availablePANTHERPTHR11239:SF12DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC10coord: 94..161
IPR012164DNA-directed RNA polymerase subunit/transcription factor SPANTHERPTHR11239DNA-DIRECTED RNA POLYMERASEcoord: 94..161
IPR019761DNA-directed RNA polymerase M, 15kDa subunit, conserved sitePROSITEPS01030RNA_POL_M_15KDcoord: 96..122

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0022131.1Lag0022131.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006386 termination of RNA polymerase III transcription
biological_process GO:0042779 tRNA 3'-trailer cleavage
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0005730 nucleolus
cellular_component GO:0005666 RNA polymerase III complex
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding