Lag0022105 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0022105
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionCCHC-type domain-containing protein
Locationchr7: 18418592 .. 18418903 (+)
RNA-Seq ExpressionLag0022105
SyntenyLag0022105
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCAGAATAGACACCAAAGGGGAGGAGAAATGGATCAAGATAAAGTTTGAGAAGTTGCCGGACTACTACTATGGATGCGGAAGATTGGGCCACCTTACAAAGGAATGTGGCTACTCGGAAGCTTTGAACGGAGAAAAACCACGGTATGGAGCAGAGCTAAAAATGGATTATGCCCAAAGAGGAAAGATAAGGAACCAGAAGGATGTTGGGGGAACAGATCGGTCGAGTGAGCACAAAAGAGACAGGGGTACAAAAGACGATAAAGAAAAACACAACAACAAGGCCAAAAGAGGGAACAAGCAACAATAA

mRNA sequence

ATGATCAGAATAGACACCAAAGGGGAGGAGAAATGGATCAAGATAAAGTTTGAGAAGTTGCCGGACTACTACTATGGATGCGGAAGATTGGGCCACCTTACAAAGGAATGTGGCTACTCGGAAGCTTTGAACGGAGAAAAACCACGGTATGGAGCAGAGCTAAAAATGGATTATGCCCAAAGAGGAAAGATAAGGAACCAGAAGGATGTTGGGGGAACAGATCGGTCGAGTGAGCACAAAAGAGACAGGGGTACAAAAGACGATAAAGAAAAACACAACAACAAGGCCAAAAGAGGGAACAAGCAACAATAA

Coding sequence (CDS)

ATGATCAGAATAGACACCAAAGGGGAGGAGAAATGGATCAAGATAAAGTTTGAGAAGTTGCCGGACTACTACTATGGATGCGGAAGATTGGGCCACCTTACAAAGGAATGTGGCTACTCGGAAGCTTTGAACGGAGAAAAACCACGGTATGGAGCAGAGCTAAAAATGGATTATGCCCAAAGAGGAAAGATAAGGAACCAGAAGGATGTTGGGGGAACAGATCGGTCGAGTGAGCACAAAAGAGACAGGGGTACAAAAGACGATAAAGAAAAACACAACAACAAGGCCAAAAGAGGGAACAAGCAACAATAA

Protein sequence

MIRIDTKGEEKWIKIKFEKLPDYYYGCGRLGHLTKECGYSEALNGEKPRYGAELKMDYAQRGKIRNQKDVGGTDRSSEHKRDRGTKDDKEKHNNKAKRGNKQQ
Homology
BLAST of Lag0022105 vs. NCBI nr
Match: KAF7147901.1 (hypothetical protein RHSIM_Rhsim03G0083400 [Rhododendron simsii])

HSP 1 Score: 60.5 bits (145), Expect = 1.0e-05
Identity = 33/93 (35.48%), Postives = 48/93 (51.61%), Query Frame = 0

Query: 5   DTKGEEKWIKIKFEKLPDYYYGCGRLGHLTKECGYSEALNGEKPRYGAELKMDYAQR--- 64
           D  G ++WI  K+EKLPD+ Y CGR+GH  + C +    +G+K  YG EL+   A+R   
Sbjct: 176 DDPGRDRWISFKYEKLPDFCYACGRIGHDNRGCKFVSKEDGDKSGYGPELRTGRARRVDV 235

Query: 65  --------GKIRNQKDVGGTDRSSEHKRDRGTK 87
                   G   + +D   T + SEH  DR  +
Sbjct: 236 PIEVIHEEGGGTSARDENLTLKQSEHLVDRAAR 268

BLAST of Lag0022105 vs. NCBI nr
Match: KAG5536301.1 (hypothetical protein RHGRI_023918 [Rhododendron griersonianum])

HSP 1 Score: 59.3 bits (142), Expect = 2.2e-05
Identity = 23/57 (40.35%), Postives = 35/57 (61.40%), Query Frame = 0

Query: 5   DTKGEEKWIKIKFEKLPDYYYGCGRLGHLTKECGYSEALNGEKPRYGAELKMDYAQR 62
           D    ++WI  K+E+LPD+ Y CGR+GH  + C +    +G+K  YG EL+   A+R
Sbjct: 120 DDPARDRWISFKYERLPDFCYACGRIGHDNRGCKFVSKEDGDKSGYGPELRTGRARR 176

BLAST of Lag0022105 vs. NCBI nr
Match: KAG5517160.1 (hypothetical protein RHGRI_037799 [Rhododendron griersonianum])

HSP 1 Score: 57.8 bits (138), Expect = 6.5e-05
Identity = 25/58 (43.10%), Postives = 33/58 (56.90%), Query Frame = 0

Query: 7   KGEEKWIKIKFEKLPDYYYGCGRLGHLTKECGYSEALNGEKPRYGAELKMDYAQRGKI 65
           +  E WI  K+EKL DY+Y CGRLGH  K C +   + G  P Y  +L+   A+R  I
Sbjct: 178 ENSELWISYKYEKLQDYWYSCGRLGHENKTCRFVPRVEGLNPSYCQDLRTGRAKRAAI 235

BLAST of Lag0022105 vs. NCBI nr
Match: TXG73180.1 (hypothetical protein EZV62_001759 [Acer yangbiense])

HSP 1 Score: 57.4 bits (137), Expect = 8.5e-05
Identity = 32/89 (35.96%), Postives = 49/89 (55.06%), Query Frame = 0

Query: 2   IRIDTKGEEKWIKIKFEKLPDYYYGCGRLGHLTKECGYSE----ALNGEKPRYGAELKMD 61
           +++    E   + +K+E+LPD+ Y CGR+GH+ KEC   E    AL+G   +YG  LK  
Sbjct: 167 LKLSKSDEIAVVGLKYERLPDFCYACGRVGHVLKECTDEEAKQGALDGSPTKYGQWLKAP 226

Query: 62  YAQRGKIRNQKDVGGT----DRSSEHKRD 83
             ++ K R Q  + G+    D+S E K D
Sbjct: 227 GVEKEKSRFQAQISGSSSERDKSQERKFD 255

BLAST of Lag0022105 vs. NCBI nr
Match: KAG5516129.1 (hypothetical protein RHGRI_036993 [Rhododendron griersonianum])

HSP 1 Score: 57.0 bits (136), Expect = 1.1e-04
Identity = 24/61 (39.34%), Postives = 35/61 (57.38%), Query Frame = 0

Query: 3  RIDTKGEEKWIKIKFEKLPDYYYGCGRLGHLTKECGYSEALNGEKPRYGAELKMDYAQRG 62
          R   + ++ WI  K+EKL DY Y CGR+GH  K C +   + G  P YG +L+M+ +   
Sbjct: 37 RKSPENKDLWISYKYEKLQDYCYTCGRIGHDNKSCRFVPRVEGLNPVYGQDLRMEKSSEK 96

Query: 63 K 64
          K
Sbjct: 97 K 97

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAF7147901.11.0e-0535.48hypothetical protein RHSIM_Rhsim03G0083400 [Rhododendron simsii][more]
KAG5536301.12.2e-0540.35hypothetical protein RHGRI_023918 [Rhododendron griersonianum][more]
KAG5517160.16.5e-0543.10hypothetical protein RHGRI_037799 [Rhododendron griersonianum][more]
TXG73180.18.5e-0535.96hypothetical protein EZV62_001759 [Acer yangbiense][more]
KAG5516129.11.1e-0439.34hypothetical protein RHGRI_036993 [Rhododendron griersonianum][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025836Zinc knuckle CX2CX4HX4CPFAMPF14392zf-CCHC_4coord: 6..38
e-value: 1.5E-8
score: 34.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 57..97
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 57..103

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0022105.1Lag0022105.1mRNA