Lag0022088 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0022088
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionZinc finger and BTB domain-containing protein 47
Locationchr7: 17856158 .. 17856526 (-)
RNA-Seq ExpressionLag0022088
SyntenyLag0022088
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAAGAAGAAAACCCAGAAGACTAAGCAGATTGCAGTCGCCATAGCTGAAACCTCCACCTCTCAATTACTTGATGATGGCGTCGACGGCCAATCCGTATGGCCCAGGAAGAGAGGTCGACCTCGTAAGATCCTCGATGAACCACAAAACGAACAAGATAACCAGAAACTGCCTTCGCCACCGCCGGAAGTTGCAGATAAACCGCTGGAGAAGAAGGCGAAACCCACCGGCGATGAGCCACCGCTGCCGGCTTCCATGGAAGGAGGTTCGATGCGAGAACAAGAACAGGAAAAACGCAAATCGGGAGATGGGTTGAGAAGCAGAGGAAGGCGGAAGAACAAACCCAGAAAAGTAGCTAACGAGTAA

mRNA sequence

ATGGGAAAGAAGAAAACCCAGAAGACTAAGCAGATTGCAGTCGCCATAGCTGAAACCTCCACCTCTCAATTACTTGATGATGGCGTCGACGGCCAATCCGTATGGCCCAGGAAGAGAGGTCGACCTCGTAAGATCCTCGATGAACCACAAAACGAACAAGATAACCAGAAACTGCCTTCGCCACCGCCGGAAGTTGCAGATAAACCGCTGGAGAAGAAGGCGAAACCCACCGGCGATGAGCCACCGCTGCCGGCTTCCATGGAAGGAGGTTCGATGCGAGAACAAGAACAGGAAAAACGCAAATCGGGAGATGGGTTGAGAAGCAGAGGAAGGCGGAAGAACAAACCCAGAAAAGTAGCTAACGAGTAA

Coding sequence (CDS)

ATGGGAAAGAAGAAAACCCAGAAGACTAAGCAGATTGCAGTCGCCATAGCTGAAACCTCCACCTCTCAATTACTTGATGATGGCGTCGACGGCCAATCCGTATGGCCCAGGAAGAGAGGTCGACCTCGTAAGATCCTCGATGAACCACAAAACGAACAAGATAACCAGAAACTGCCTTCGCCACCGCCGGAAGTTGCAGATAAACCGCTGGAGAAGAAGGCGAAACCCACCGGCGATGAGCCACCGCTGCCGGCTTCCATGGAAGGAGGTTCGATGCGAGAACAAGAACAGGAAAAACGCAAATCGGGAGATGGGTTGAGAAGCAGAGGAAGGCGGAAGAACAAACCCAGAAAAGTAGCTAACGAGTAA

Protein sequence

MGKKKTQKTKQIAVAIAETSTSQLLDDGVDGQSVWPRKRGRPRKILDEPQNEQDNQKLPSPPPEVADKPLEKKAKPTGDEPPLPASMEGGSMREQEQEKRKSGDGLRSRGRRKNKPRKVANE
Homology
BLAST of Lag0022088 vs. NCBI nr
Match: KAG7020516.1 (hypothetical protein SDJN02_17201, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 138.3 bits (347), Expect = 4.5e-29
Identity = 87/121 (71.90%), Postives = 97/121 (80.17%), Query Frame = 0

Query: 1   MGKKKTQKTKQIAVAIAETSTSQLLDDG---VDGQSVWPRKRGRPRKILDEPQNEQDNQK 60
           MGKKKTQKTKQI+VAIAETSTS+L DDG     GQSV PRKRGRPRK+LDEP    D++K
Sbjct: 1   MGKKKTQKTKQISVAIAETSTSKLPDDGGAHGGGQSVQPRKRGRPRKVLDEP---PDDKK 60

Query: 61  LPSPPPEVADKPLEKKAKPTGDEPPLPASMEGGSMREQEQEKRKSGDGLRSRGRRKNKPR 119
           LP PP +VADKPL+KK K TGDEP  P SMEG S ++ E E+ KSGDG RSRGRRKNKPR
Sbjct: 61  LPPPPADVADKPLQKKGKSTGDEP--PDSMEGAS-KQHESEEPKSGDGSRSRGRRKNKPR 115

BLAST of Lag0022088 vs. NCBI nr
Match: KAA0065239.1 (zinc finger and BTB domain-containing protein 47 [Cucumis melo var. makuwa])

HSP 1 Score: 137.9 bits (346), Expect = 5.9e-29
Identity = 85/121 (70.25%), Postives = 98/121 (80.99%), Query Frame = 0

Query: 1   MGKKKTQKTKQIAVAIAETSTSQLLDDGVDGQSVWPRKRGRPRKILDEPQNEQDNQKLPS 60
           MGKKKTQKTK+IAVAIAETSTS+L DDG+ GQS+ PRKRGRPRK+LDE QNEQ+N+KLP 
Sbjct: 1   MGKKKTQKTKEIAVAIAETSTSKLADDGI-GQSIQPRKRGRPRKVLDEQQNEQENKKLPP 60

Query: 61  PP---PEVADKPLEKKAKPTGDEPPLPASMEGGSMREQEQEKRKSGDGLRSRGRRKNKPR 119
           PP   PEV + P EKK K T DEPP P S++ GS    +QE+ K+GDG RSRGRRKNKPR
Sbjct: 61  PPPLLPEVEENPPEKKIKATVDEPP-PGSVKEGS----KQEEPKTGDGSRSRGRRKNKPR 115

BLAST of Lag0022088 vs. NCBI nr
Match: XP_038884964.1 (uncharacterized protein LOC120075548 [Benincasa hispida])

HSP 1 Score: 136.0 bits (341), Expect = 2.2e-28
Identity = 83/118 (70.34%), Postives = 96/118 (81.36%), Query Frame = 0

Query: 1   MGKKKTQKTKQIAVAIAETSTSQLLDDGVDGQSVWPRKRGRPRKILDEPQNEQDNQKLPS 60
           MGKKK QKTK+IAVAIAETS S+L DDG+ GQS+ PRKRGRPRK+LDEPQN+Q+N+KL  
Sbjct: 1   MGKKKPQKTKEIAVAIAETSASKLADDGI-GQSIQPRKRGRPRKVLDEPQNKQENKKLLP 60

Query: 61  PPPEVADKPLEKKAKPTGDEPPLPASMEGGSMREQEQEKRKSGDGLRSRGRRKNKPRK 119
           P PEVA+ P EKKAK T D+PP P SME GS    +Q + K+GDG RSRGRRKNKPRK
Sbjct: 61  PLPEVAENPPEKKAKTTVDQPP-PGSMEEGS----KQGEPKTGDGSRSRGRRKNKPRK 112

BLAST of Lag0022088 vs. NCBI nr
Match: XP_023537340.1 (uncharacterized protein LOC111798433 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 135.2 bits (339), Expect = 3.8e-28
Identity = 85/121 (70.25%), Postives = 96/121 (79.34%), Query Frame = 0

Query: 1   MGKKKTQKTKQIAVAIAETSTSQLLDDG---VDGQSVWPRKRGRPRKILDEPQNEQDNQK 60
           MGKKKTQKTKQI+VAIAE STS+L DDG     GQSV PRKRGRPRK+LDEP +  D + 
Sbjct: 1   MGKKKTQKTKQISVAIAEISTSKLPDDGGGHGGGQSVQPRKRGRPRKVLDEPPD--DKKL 60

Query: 61  LPSPPPEVADKPLEKKAKPTGDEPPLPASMEGGSMREQEQEKRKSGDGLRSRGRRKNKPR 119
           LP PP +VADKPL+KK K TGDEPP+  SMEG S ++ E E+ KSGDG RSRGRRKNKPR
Sbjct: 61  LPPPPADVADKPLQKKGKSTGDEPPI--SMEGAS-KQHESEEPKSGDGSRSRGRRKNKPR 116

BLAST of Lag0022088 vs. NCBI nr
Match: XP_023002541.1 (uncharacterized protein LOC111496353 [Cucurbita maxima])

HSP 1 Score: 134.0 bits (336), Expect = 8.5e-28
Identity = 85/121 (70.25%), Postives = 96/121 (79.34%), Query Frame = 0

Query: 1   MGKKKTQKTKQIAVAIAETSTSQLLDDG---VDGQSVWPRKRGRPRKILDEPQNEQDNQK 60
           MGKKKTQKTKQI+VAIAETSTS+L DDG     GQS  PRKRGRPRK+LDEP +  D + 
Sbjct: 33  MGKKKTQKTKQISVAIAETSTSKLPDDGGGHGGGQSEQPRKRGRPRKVLDEPPD--DKKL 92

Query: 61  LPSPPPEVADKPLEKKAKPTGDEPPLPASMEGGSMREQEQEKRKSGDGLRSRGRRKNKPR 119
           LP P  +VADKPL+KK K TGDEPP+  SMEG S ++QE E+ KSGDG RSRGRRKNKPR
Sbjct: 93  LPPPAADVADKPLQKKGKTTGDEPPI--SMEGAS-KQQESEEPKSGDGSRSRGRRKNKPR 148

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7020516.14.5e-2971.90hypothetical protein SDJN02_17201, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAA0065239.15.9e-2970.25zinc finger and BTB domain-containing protein 47 [Cucumis melo var. makuwa][more]
XP_038884964.12.2e-2870.34uncharacterized protein LOC120075548 [Benincasa hispida][more]
XP_023537340.13.8e-2870.25uncharacterized protein LOC111798433 [Cucurbita pepo subsp. pepo][more]
XP_023002541.18.5e-2870.25uncharacterized protein LOC111496353 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 19..122
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 32..51
NoneNo IPR availablePANTHERPTHR37615NUCLEOPORIN NUP159-LIKEcoord: 1..118

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0022088.1Lag0022088.1mRNA