Lag0022086 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0022086
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr7: 17833838 .. 17834257 (+)
RNA-Seq ExpressionLag0022086
SyntenyLag0022086
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTTATGGAAACTAACTCGTACTCATGTTTTTCTGGAGGAGAATTTTTATGGGAGTTTTATAGATAGATGGCTCAAAATTGTCTCCAGCAGCTCTAAAGAGGAACTTGGGCGAATAGCTACTATTTGCTGGTCTCTATGGAATGACAGAAACAATGATTTGCATGGAAAACACATTCCTTCTATAGACATCAAACGAAGATGGATATTGGAGTACCTGAGTTCTTTCCAGAGAGCAAACTCAAAAAGTCAGCAGGCGGTTTCTTCAAATATGAATCAGCAGCAGCCCCAGTTGATTCCGAGAGATTGCGGTCCTTTTCCCCTAGATGGCTTCTGGCAGTTGAACACTGATGCGTCCTGCTCATGCTCCTCTTCGTCGACTGGTCTCAGAATCTTGTGTAGAGATAAGGATGGCTAG

mRNA sequence

ATGGATTTATGGAAACTAACTCGTACTCATGTTTTTCTGGAGGAGAATTTTTATGGGAGTTTTATAGATAGATGGCTCAAAATTGTCTCCAGCAGCTCTAAAGAGGAACTTGGGCGAATAGCTACTATTTGCTGGTCTCTATGGAATGACAGAAACAATGATTTGCATGGAAAACACATTCCTTCTATAGACATCAAACGAAGATGGATATTGGAGTACCTGAGTTCTTTCCAGAGAGCAAACTCAAAAAGTCAGCAGGCGGTTTCTTCAAATATGAATCAGCAGCAGCCCCAGTTGATTCCGAGAGATTGCGGTCCTTTTCCCCTAGATGGCTTCTGGCAGTTGAACACTGATGCGTCCTGCTCATGCTCCTCTTCGTCGACTGGTCTCAGAATCTTGTGTAGAGATAAGGATGGCTAG

Coding sequence (CDS)

ATGGATTTATGGAAACTAACTCGTACTCATGTTTTTCTGGAGGAGAATTTTTATGGGAGTTTTATAGATAGATGGCTCAAAATTGTCTCCAGCAGCTCTAAAGAGGAACTTGGGCGAATAGCTACTATTTGCTGGTCTCTATGGAATGACAGAAACAATGATTTGCATGGAAAACACATTCCTTCTATAGACATCAAACGAAGATGGATATTGGAGTACCTGAGTTCTTTCCAGAGAGCAAACTCAAAAAGTCAGCAGGCGGTTTCTTCAAATATGAATCAGCAGCAGCCCCAGTTGATTCCGAGAGATTGCGGTCCTTTTCCCCTAGATGGCTTCTGGCAGTTGAACACTGATGCGTCCTGCTCATGCTCCTCTTCGTCGACTGGTCTCAGAATCTTGTGTAGAGATAAGGATGGCTAG

Protein sequence

MDLWKLTRTHVFLEENFYGSFIDRWLKIVSSSSKEELGRIATICWSLWNDRNNDLHGKHIPSIDIKRRWILEYLSSFQRANSKSQQAVSSNMNQQQPQLIPRDCGPFPLDGFWQLNTDASCSCSSSSTGLRILCRDKDG
Homology
BLAST of Lag0022086 vs. NCBI nr
Match: XP_022131661.1 (uncharacterized protein LOC111004786 [Momordica charantia])

HSP 1 Score: 65.1 bits (157), Expect = 5.5e-07
Identity = 40/139 (28.78%), Postives = 67/139 (48.20%), Query Frame = 0

Query: 3   LWKLTRTHVFLEE-NFYGSFIDRWLKIVSSSSKEELGRIATICWSLWNDRNNDLHGKHIP 62
           +W L    +F    N   SF+D WL +    + ++    A   W++W DRN+  HG  + 
Sbjct: 17  IWNLMFPSLFTSPINGNLSFMDIWLLLYDKLNPQQRDLAAFTXWAIWCDRNSXAHGSSVS 76

Query: 63  SIDIKRRWILEYLSSFQRANSKSQQAVSSNMNQQQPQLIPRDCGPF-PLDGFWQLNTDAS 122
           +  ++  WI  Y  ++      SQ   +  ++ QQ  + P  C    P D   ++N+DA 
Sbjct: 77  TPALRCNWISSYFQNY------SQAQENKRISPQQSSVPPPSCRWLPPRDSAMKVNSDA- 136

Query: 123 CSCSSSSTGLRILCRDKDG 140
            +C S+STGL ++ RD  G
Sbjct: 137 -ACRSTSTGLGLIIRDHFG 147

BLAST of Lag0022086 vs. NCBI nr
Match: XP_030508852.1 (uncharacterized protein LOC115723496 [Cannabis sativa])

HSP 1 Score: 60.1 bits (144), Expect = 1.8e-05
Identity = 36/141 (25.53%), Postives = 68/141 (48.23%), Query Frame = 0

Query: 3    LWKLTRTHVFLEENFYGSFIDRWLKIVSSSSKEELGRIATICWSLWNDRNNDLHGKHIPS 62
            +W+L+   +  +     S  D  L + +S S  EL     +CWS+W++RN   HG  + +
Sbjct: 1116 VWELSNFSIDFQTIERSSTADTLLLLSTSLSSSELELFLVLCWSIWHERNAIYHGNSVRT 1175

Query: 63   IDIKRRWILEYLSSFQRANSKSQQAVSSN----MNQQQPQLIPRDCGPFPLDGFWQLNTD 122
                  +   YL+ FQ+A +K+ + V+++     ++   + I       P  G  +LNTD
Sbjct: 1176 PAAVAAYAPSYLTEFQQARAKNAKPVTASGAATPSRPSSEFIHAPKWTTPPRGRLKLNTD 1235

Query: 123  ASCSCSSSSTGLRILCRDKDG 140
            A+     ++ G+  + R+ DG
Sbjct: 1236 AAIDKERNTIGIGAVLRNSDG 1256

BLAST of Lag0022086 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 58.9 bits (141), Expect = 4.0e-05
Identity = 32/110 (29.09%), Postives = 56/110 (50.91%), Query Frame = 0

Query: 20   SFIDRWLKIVSSSSKEELGRIATICWSLWNDRNNDLHGKHIPSIDIKRRWILEYLSSFQR 79
            SF++ W  +      ++L   A   W +WNDRN+ +HGK +  ++ K  W+  +L S   
Sbjct: 1214 SFLELWSSLTEQLEPKDLNLAAITGWGIWNDRNSLIHGKQVSPVEFKCEWLTPFLDS--- 1273

Query: 80   ANSKSQQAVSSNMNQQQPQLIPRDCGPFPLDGFWQLNTDASCSCSSSSTG 130
             +S++Q +  S   Q   + + +   P       +LNTDA+C  +S+S G
Sbjct: 1274 -HSQAQMSNYSPRTQSNHRPVVQYWRPSSSVSL-KLNTDAACRGASTSFG 1318

BLAST of Lag0022086 vs. NCBI nr
Match: XP_030508858.1 (uncharacterized protein LOC115723499 [Cannabis sativa])

HSP 1 Score: 57.8 bits (138), Expect = 8.8e-05
Identity = 41/141 (29.08%), Postives = 62/141 (43.97%), Query Frame = 0

Query: 4   WKLTRTHVFLEENFYGSFIDRWLKIVSSSSKEELGRIATICWSLWNDRNNDLHGKHIPSI 63
           +KL  T    E  FY S          ++S  +  +  TICWS+W +RN + H K     
Sbjct: 854 FKLAATSSAEEFLFYAS---------DNTSTSDFEQFLTICWSIWYERNAEFHDKSPKQP 913

Query: 64  DIKRRWILEYLSSFQRANSKSQQAVSSNMNQQQPQ-----LIPRDCGPFPLDGFWQLNTD 123
                +  +YL  +Q A ++S    S+  +   P          D    PL G ++LNTD
Sbjct: 914 AAVLAFATDYLGKYQSAQAQSVSNNSAATSITHPASRSQVAASTDQWIAPLAGKFKLNTD 973

Query: 124 ASCSCSSSSTGLRILCRDKDG 140
           A+C+ +S   GL  + RD  G
Sbjct: 974 AACNKASKIIGLGAVLRDSSG 985

BLAST of Lag0022086 vs. NCBI nr
Match: XP_030486818.1 (uncharacterized protein LOC115703724 [Cannabis sativa])

HSP 1 Score: 57.0 bits (136), Expect = 1.5e-04
Identity = 34/114 (29.82%), Postives = 55/114 (48.25%), Query Frame = 0

Query: 26  LKIVSSSSKEELGRIATICWSLWNDRNNDLHGKHIPSIDIKRRWILEYLSSFQRANSKSQ 85
           L I +  S  ++ +  TI W +WN+ NN  HG  I   ++   + L +L  FQ A     
Sbjct: 94  LHISTIWSDTKIEQFITILWHIWNEMNNGKHGNKIKPHEMVLYFALSFLEEFQAAQQSRS 153

Query: 86  QAVSSNMNQQQPQLIPRDCGPFPLDGFWQLNTDASCSCSSSSTGLRILCRDKDG 140
           +A SS+ +              P  G  +LNTDA+ + +S++TG   + RD +G
Sbjct: 154 KASSSSNSSSMAATTSDLDWMNPPSGRLKLNTDAAVNRASNTTGCGAILRDSNG 207

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022131661.15.5e-0728.78uncharacterized protein LOC111004786 [Momordica charantia][more]
XP_030508852.11.8e-0525.53uncharacterized protein LOC115723496 [Cannabis sativa][more]
XP_022158377.14.0e-0529.09uncharacterized protein LOC111024874 [Momordica charantia][more]
XP_030508858.18.8e-0529.08uncharacterized protein LOC115723499 [Cannabis sativa][more]
XP_030486818.11.5e-0429.82uncharacterized protein LOC115703724 [Cannabis sativa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0022086.1Lag0022086.1mRNA