Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTTTTTGGGTGTGTCCATTTGTGAAATATCAGTGGCGTTGCTCCAAGTTCGAGTTCCTGTATCAGTCCTTAACTCCCATGAATTTTGAATCAATTTTGTGGGCTGTTAAGGAGAGGCTGGCTATGTTGGACTTCGAGCTTGTGGTAGTATTTTGGTGGGCAGTGTGGAACCTGCGTAATTCATTGGTCCGGGGAGGGAATGTGGTTGAAAAGGACTTAACGCAAAGGTCCTCTGATTATTTAGCCTCTTTTCAACGTGTTGTAGCGTTTCGAGGGGTGGTGTCTTCATGTATCTCCCTGTCTTCTTCTAATCGGCCGACCTGCACTTGGAAGCCGTCGTTAGAGCTAGATTTAAAACTGAATGTAGATGCCTCGGTTAACCTGGAAACTGGGAATGCAGGAGGAGGTTGCGTTCTGGGTAATGCTAGGGGTGAAGTCTTACTGGCAACATGTATTTTTCTTCCTCGATGTTGGTGTGTGGATGTGGCTGAAGATTGGGCTCTGCTCACTGGAGTCCAAATTGCACGTCAATCTGGGTTTTCGCAATTTCATGTGGAGACGAACTCTTTGAGGCTAGTCAAGATTTTAAATGGGGAGTCTGATGATGTCTCTGAGGTTGGCTTGCTCATGGATGAGGCTCGGGTTTTGCTGCTACAGGACCTCGTTATGCAAAGTCTCGTTCACGCCACGGTCTGGGAAAATGGCAACCCATATTATGGCTTCTCTAGCTTTTAG
mRNA sequence
ATGTTTTTTTGGGTGTGTCCATTTGTGAAATATCAGTGGCGTTGCTCCAAGTTCGAGTTCCTGTATCAGTCCTTAACTCCCATGAATTTTGAATCAATTTTGTGGGCTGTTAAGGAGAGGCTGGCTATGTTGGACTTCGAGCTTGTGGTAGTATTTTGGTGGGCAGTGTGGAACCTGCGTAATTCATTGGTCCGGGGAGGGAATGTGGTTGAAAAGGACTTAACGCAAAGGTCCTCTGATTATTTAGCCTCTTTTCAACGTGTTGTAGCGTTTCGAGGGGTGGTGTCTTCATGTATCTCCCTGTCTTCTTCTAATCGGCCGACCTGCACTTGGAAGCCGTCGTTAGAGCTAGATTTAAAACTGAATGTAGATGCCTCGGTTAACCTGGAAACTGGGAATGCAGGAGGAGGTTGCGTTCTGGGTAATGCTAGGGGTGAAGTCTTACTGGCAACATGTATTTTTCTTCCTCGATGTTGGTGTGTGGATGTGGCTGAAGATTGGGCTCTGCTCACTGGAGTCCAAATTGCACGTCAATCTGGGTTTTCGCAATTTCATGTGGAGACGAACTCTTTGAGGCTAGTCAAGATTTTAAATGGGGAGTCTGATGATGTCTCTGAGGTTGGCTTGCTCATGGATGAGGCTCGGGTTTTGCTGCTACAGGACCTCGTTATGCAAAGTCTCGTTCACGCCACGGTCTGGGAAAATGGCAACCCATATTATGGCTTCTCTAGCTTTTAG
Coding sequence (CDS)
ATGTTTTTTTGGGTGTGTCCATTTGTGAAATATCAGTGGCGTTGCTCCAAGTTCGAGTTCCTGTATCAGTCCTTAACTCCCATGAATTTTGAATCAATTTTGTGGGCTGTTAAGGAGAGGCTGGCTATGTTGGACTTCGAGCTTGTGGTAGTATTTTGGTGGGCAGTGTGGAACCTGCGTAATTCATTGGTCCGGGGAGGGAATGTGGTTGAAAAGGACTTAACGCAAAGGTCCTCTGATTATTTAGCCTCTTTTCAACGTGTTGTAGCGTTTCGAGGGGTGGTGTCTTCATGTATCTCCCTGTCTTCTTCTAATCGGCCGACCTGCACTTGGAAGCCGTCGTTAGAGCTAGATTTAAAACTGAATGTAGATGCCTCGGTTAACCTGGAAACTGGGAATGCAGGAGGAGGTTGCGTTCTGGGTAATGCTAGGGGTGAAGTCTTACTGGCAACATGTATTTTTCTTCCTCGATGTTGGTGTGTGGATGTGGCTGAAGATTGGGCTCTGCTCACTGGAGTCCAAATTGCACGTCAATCTGGGTTTTCGCAATTTCATGTGGAGACGAACTCTTTGAGGCTAGTCAAGATTTTAAATGGGGAGTCTGATGATGTCTCTGAGGTTGGCTTGCTCATGGATGAGGCTCGGGTTTTGCTGCTACAGGACCTCGTTATGCAAAGTCTCGTTCACGCCACGGTCTGGGAAAATGGCAACCCATATTATGGCTTCTCTAGCTTTTAG
Protein sequence
MFFWVCPFVKYQWRCSKFEFLYQSLTPMNFESILWAVKERLAMLDFELVVVFWWAVWNLRNSLVRGGNVVEKDLTQRSSDYLASFQRVVAFRGVVSSCISLSSSNRPTCTWKPSLELDLKLNVDASVNLETGNAGGGCVLGNARGEVLLATCIFLPRCWCVDVAEDWALLTGVQIARQSGFSQFHVETNSLRLVKILNGESDDVSEVGLLMDEARVLLLQDLVMQSLVHATVWENGNPYYGFSSF
Homology
BLAST of Lag0022060 vs. NCBI nr
Match:
XP_030941688.1 (uncharacterized protein LOC115966628 [Quercus lobata])
HSP 1 Score: 93.2 bits (230), Expect = 3.3e-15
Identity = 64/236 (27.12%), Postives = 110/236 (46.61%), Query Frame = 0
Query: 4 WVCPFVKYQWRCSKFEFLYQSLTPMNFESILWAVKE---RLAMLDFELVVVFWWAVWNLR 63
W CP + W S Q T ++ +L E RL+ +FEL + W +WN R
Sbjct: 920 WECPVAQDVWSGSLVRL--QKCT-QGYDDVLQLFGELLNRLSREEFELFLTLSWVIWNQR 979
Query: 64 NSLVRGGNVVEK-DLTQRSSDYLASFQRVVAFRGVVSSCISLSSSNRPTCTWKPSLELDL 123
N+++ GG + + L +R+ YL +++ +S+ S + W+P
Sbjct: 980 NAVIHGGKIKDPGQLCKRAEVYLLEYRQ-------AQDQLSIPSRQQSVTQWQPPPIDRY 1039
Query: 124 KLNVDASVNLETGNAGGGCVLGNARGEVLLATCIFLPRCWCVDVAEDWALLTGVQIARQS 183
KLN DA++ E G +G G ++ N RGEV+ A + P W + AE A V+ A +
Sbjct: 1040 KLNFDAAIFTELGCSGFGAIVRNERGEVMAALSVKGPLVWNSEEAEALACRRAVEFAIHA 1099
Query: 184 GFSQFHVETNSLRLVKILNGESDDVSEVGLLMDEARVLLLQDLVMQSLVHATVWEN 236
GF++ +E +++ ++K + S D S +G + + +Q LVH W +
Sbjct: 1100 GFAELMIEGDNVNVMKAVCSNSMDKSRLGHVFQD----------IQCLVHGLRWSS 1135
BLAST of Lag0022060 vs. NCBI nr
Match:
XP_023884925.1 (uncharacterized protein LOC111997106 [Quercus suber])
HSP 1 Score: 92.4 bits (228), Expect = 5.7e-15
Identity = 55/182 (30.22%), Postives = 96/182 (52.75%), Query Frame = 0
Query: 39 ERLAMLDFELVVVFWWAVWNLRNSLVRGGNV-VEKDLTQRSSDYLASFQRVVAFRGVVSS 98
ERL+ + EL W VWN RN L+ GG + V L +R+ +Y++ F+ S
Sbjct: 6 ERLSQDELELFWTQAWIVWNQRNCLLHGGQLKVPSSLNKRAEEYISEFKE-------AQS 65
Query: 99 CISLSSSNRPT-CTWKPSLELDLKLNVDASVNLETGNAGGGCVLGNARGEVLLATCIFLP 158
+ + + +P TW+P + K+N DA++ E G G G ++ N GEV+ A P
Sbjct: 66 RLGVQRAQQPAGDTWQPPPPGEFKMNFDAAMFSELGKTGYGAIIRNENGEVMAAMSASGP 125
Query: 159 RCWCVDVAEDWALLTGVQIARQSGFSQFHVETNSLRLVKILNGESDDVSEVGLLMDEARV 218
D AE A ++ A +GFS+ VE +++ +V+ ++ +++S +G+++D+ R
Sbjct: 126 MVRTSDEAEFLACRRAIEFAVDAGFSRMIVEGDNINVVQAISSSVENISPIGIVVDDIRH 180
BLAST of Lag0022060 vs. NCBI nr
Match:
XP_022150944.1 (uncharacterized protein LOC111018973 [Momordica charantia])
HSP 1 Score: 90.5 bits (223), Expect = 2.2e-14
Identity = 67/214 (31.31%), Postives = 106/214 (49.53%), Query Frame = 0
Query: 13 WRCSKF-EFLYQSLTPMNFE--SILWAVKERLAMLDFELVVVFWWAVWNLRNSLVR---- 72
W+CSKF FL+ P+ + + + ++ +VV WA+WN RN +
Sbjct: 5 WQCSKFSHFLHLLWVPVGSDMGHFMRVWTDLVSWQHIGAIVVLLWAIWNARNQTPQHFSL 64
Query: 73 GGNVVEKDLTQRSSDYLASFQRVVAFRGVVSSCISLSSSNRP-TCTWKPSLELDLKLNVD 132
GG++ DL S +YL +Q SS +L P W+P LK+NVD
Sbjct: 65 GGSL--SDLVSWSENYLQVYQAAQR-----SSXSALVVCRPPRVAIWRPPAAPLLKVNVD 124
Query: 133 ASVNLETGNAGGGCVLGNARGEVLLATCIFLPRCWCVDVAEDWALLTGVQIARQSGFSQF 192
A+ E+ AG G ++ ++ G V L L R VD E +A+ G+ +A ++GF +F
Sbjct: 125 AAFRKESFVAGVGVIIRDSTGLVYLTAIRLLARASDVDWVEGFAVYEGILLAVEAGFIRF 184
Query: 193 HVETNSLRLVKILNGESDDVSEVGLLMDEARVLL 219
+ET+SLR+ +L + D SEVG+L ++ L
Sbjct: 185 QIETDSLRIFNLLTTDCVDDSEVGVLCSVIKLFL 211
BLAST of Lag0022060 vs. NCBI nr
Match:
XP_023904177.1 (uncharacterized protein LOC112015942 [Quercus suber])
HSP 1 Score: 89.7 bits (221), Expect = 3.7e-14
Identity = 58/216 (26.85%), Postives = 104/216 (48.15%), Query Frame = 0
Query: 4 WVCPFVKYQWRCSKFEFLYQSLTPMNFESILWAVKERLAMLDFELVVVFWWAVWNLRNSL 63
W CP + W S+ + L + + + RL D L +V W +W+ RNS+
Sbjct: 248 WECPVAQDVWAGSRIKLQKCPLGQPDMVQLFLYLLHRLEPEDMALFLVQAWMLWSQRNSV 307
Query: 64 VRGGNVVEKD-LTQRSSDYLASFQRVVAFRGVVSSCISLSSSNRPTCTWKPSLELDLKLN 123
+ GG + E L +R ++L F +V V+ ++ + W+P K+N
Sbjct: 308 LHGGKLKEPGWLNKRDVEWLEEFAQVQDQLDVLQPRATVGN------VWRPPAHPFFKMN 367
Query: 124 VDASVNLETGNAGGGCVLGNARGEVLLATCIFLPRCWCVDVAEDWALLTGVQIARQSGFS 183
DA++ ++G +G G V+ N GEV+ A P D AE A ++ A +GF+
Sbjct: 368 FDAAIFNDSGRSGFGAVIRNELGEVMAALSAIGPSVSSSDEAETLACRKAMEFAVDAGFN 427
Query: 184 QFHVETNSLRLVKILNGESDDVSEVGLLMDEARVLL 219
+ +E +S+ ++K L+ S D+S VG ++ + + L+
Sbjct: 428 ELIIEGDSINVIKALSSSSPDLSVVGNVVADIKCLI 457
BLAST of Lag0022060 vs. NCBI nr
Match:
TXG68182.1 (hypothetical protein EZV62_003117 [Acer yangbiense])
HSP 1 Score: 84.7 bits (208), Expect = 1.2e-12
Identity = 61/212 (28.77%), Postives = 113/212 (53.30%), Query Frame = 0
Query: 23 QSLTPMNFESILWAVK------ERLAMLDFELVVVFWWAVWNLRNSLVRGGNVVEKDLTQ 82
QSL+ + F LW +K L + L+ +FWW +W LRN+ G + D
Sbjct: 277 QSLS-LRFTLFLWILKLFRFCLSSLRDDELALLCIFWWRIWFLRNNNCHGKKGIGDDSLL 336
Query: 83 RSSDYLASFQRVVAFRGVVSSCIS-LSSSNRPTCTWKPSLELDLKLNVDASVNLETGNAG 142
+ SF +VAF C++ +S++N WKP +E +K+N DA++++ G G
Sbjct: 337 A---WCESF--LVAFWDANQVCLNGVSAANPSIVVWKPPVEGTIKINCDAALDMNRGVVG 396
Query: 143 GGCVLGNARGEVLLATCI-FLPRCWCVDVAEDWALLTGVQIARQSGFSQFHVETNSLRLV 202
G V+ + G V+LA+C+ + + +AE +L G+ +A S F ++T++L +V
Sbjct: 397 FGLVVRDF-GGVVLASCVQHIQVNFSPLIAEAMTILRGINLAFDSNLIPFVIKTDALAVV 456
Query: 203 KILNGESDDVSEVGLLMDEARVLLLQDLVMQS 227
K++ +S ++++GL++ E ++ D++ QS
Sbjct: 457 KLIEAKSPSLADIGLVIGE--IVSKLDMISQS 479
BLAST of Lag0022060 vs. ExPASy TrEMBL
Match:
A0A6J1DBJ7 (uncharacterized protein LOC111018973 OS=Momordica charantia OX=3673 GN=LOC111018973 PE=4 SV=1)
HSP 1 Score: 90.5 bits (223), Expect = 1.0e-14
Identity = 67/214 (31.31%), Postives = 106/214 (49.53%), Query Frame = 0
Query: 13 WRCSKF-EFLYQSLTPMNFE--SILWAVKERLAMLDFELVVVFWWAVWNLRNSLVR---- 72
W+CSKF FL+ P+ + + + ++ +VV WA+WN RN +
Sbjct: 5 WQCSKFSHFLHLLWVPVGSDMGHFMRVWTDLVSWQHIGAIVVLLWAIWNARNQTPQHFSL 64
Query: 73 GGNVVEKDLTQRSSDYLASFQRVVAFRGVVSSCISLSSSNRP-TCTWKPSLELDLKLNVD 132
GG++ DL S +YL +Q SS +L P W+P LK+NVD
Sbjct: 65 GGSL--SDLVSWSENYLQVYQAAQR-----SSXSALVVCRPPRVAIWRPPAAPLLKVNVD 124
Query: 133 ASVNLETGNAGGGCVLGNARGEVLLATCIFLPRCWCVDVAEDWALLTGVQIARQSGFSQF 192
A+ E+ AG G ++ ++ G V L L R VD E +A+ G+ +A ++GF +F
Sbjct: 125 AAFRKESFVAGVGVIIRDSTGLVYLTAIRLLARASDVDWVEGFAVYEGILLAVEAGFIRF 184
Query: 193 HVETNSLRLVKILNGESDDVSEVGLLMDEARVLL 219
+ET+SLR+ +L + D SEVG+L ++ L
Sbjct: 185 QIETDSLRIFNLLTTDCVDDSEVGVLCSVIKLFL 211
BLAST of Lag0022060 vs. ExPASy TrEMBL
Match:
A0A803QHW9 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)
HSP 1 Score: 85.1 bits (209), Expect = 4.4e-13
Identity = 61/211 (28.91%), Postives = 94/211 (44.55%), Query Frame = 0
Query: 4 WVCPFVKYQWRCSKFEFLYQSLTPMNFESILWAVKERLAMLDFELVVVFWWAVWNLRNSL 63
+ CP K W+ S F ++ M+ ++ + + DFEL V WA+W+ RN +
Sbjct: 286 FTCPHAKSTWKHSDFTMDFRKAQAMHDGDFIFHLSNVHSQPDFELNVCTMWAIWSHRNKV 345
Query: 64 VRGGNVVE-KDLTQRSSDYLASFQRVVAFRGVVSSCISLSSSNRPT--------CTWKPS 123
+ GG + E K T + DYL + + S+S + T +W+P
Sbjct: 346 LHGGVLKEGKITTSFAQDYLGKYHASTRQTHTAPAVTSVSPTGAHTSKKQASKDISWQPP 405
Query: 124 LELDLKLNVDASVNLETGNAGGGCVLGNARGEVLLATCIFLPRCWCVDVAEDWALLTGVQ 183
LKLNVDA+VN + G G ++ + G V+ A C+ D E AL +
Sbjct: 406 TAAGLKLNVDAAVNATSQTLGVGAIVRDHNGLVVAAISKPAQGCFHSDEMEAKALFHSLN 465
Query: 184 IARQSGFSQFHVETNSLRLVKILNGESDDVS 206
A Q H+ET+SLR+ L S D+S
Sbjct: 466 WALQQQLQITHIETDSLRVFNALIHTSIDLS 496
BLAST of Lag0022060 vs. ExPASy TrEMBL
Match:
A0A5C7IHD9 (RNase H domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_003117 PE=4 SV=1)
HSP 1 Score: 84.7 bits (208), Expect = 5.7e-13
Identity = 61/212 (28.77%), Postives = 113/212 (53.30%), Query Frame = 0
Query: 23 QSLTPMNFESILWAVK------ERLAMLDFELVVVFWWAVWNLRNSLVRGGNVVEKDLTQ 82
QSL+ + F LW +K L + L+ +FWW +W LRN+ G + D
Sbjct: 277 QSLS-LRFTLFLWILKLFRFCLSSLRDDELALLCIFWWRIWFLRNNNCHGKKGIGDDSLL 336
Query: 83 RSSDYLASFQRVVAFRGVVSSCIS-LSSSNRPTCTWKPSLELDLKLNVDASVNLETGNAG 142
+ SF +VAF C++ +S++N WKP +E +K+N DA++++ G G
Sbjct: 337 A---WCESF--LVAFWDANQVCLNGVSAANPSIVVWKPPVEGTIKINCDAALDMNRGVVG 396
Query: 143 GGCVLGNARGEVLLATCI-FLPRCWCVDVAEDWALLTGVQIARQSGFSQFHVETNSLRLV 202
G V+ + G V+LA+C+ + + +AE +L G+ +A S F ++T++L +V
Sbjct: 397 FGLVVRDF-GGVVLASCVQHIQVNFSPLIAEAMTILRGINLAFDSNLIPFVIKTDALAVV 456
Query: 203 KILNGESDDVSEVGLLMDEARVLLLQDLVMQS 227
K++ +S ++++GL++ E ++ D++ QS
Sbjct: 457 KLIEAKSPSLADIGLVIGE--IVSKLDMISQS 479
BLAST of Lag0022060 vs. ExPASy TrEMBL
Match:
A0A803Q185 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)
HSP 1 Score: 80.5 bits (197), Expect = 1.1e-11
Identity = 55/222 (24.77%), Postives = 100/222 (45.05%), Query Frame = 0
Query: 4 WVCPFVKYQWRCSKFEFLYQSLTPMNFESILWAVKERLAMLDFELVVVFWWAVWNLRNSL 63
W C K W+ F+ + + + L + ++ FE+ +V W++WN RN+
Sbjct: 321 WECKKSKVCWKLCDFQLEIKRHGQEDELAFLMRLSTVMSKDQFEMFLVITWSLWNTRNAC 380
Query: 64 VRGGNVVE-KDLTQRSSDYLASFQRVVAFRGVVSSCISLSSSNRPTCTWKPSLELDLKLN 123
G V + ++ + L FQ R WK ++K+N
Sbjct: 381 THDGFVPQPAEMVEWCYKLLEDFQG--------GRSRPQEVMRREEGVWKVPRHGEVKIN 440
Query: 124 VDASVNLETGNAGGGCVLGNARGEVLLATCIFLPRCWCVDVAEDWALLTGVQIARQSGFS 183
VDASV G +G GCV+ +G+VL A+ + R + E A+L G+Q+ Q
Sbjct: 441 VDASVKTGAGYSGLGCVIRGEQGDVLFASSTAIQREYSPLQLELMAILKGIQVGLQRHIR 500
Query: 184 QFHVETNSLRLVKILNGESDDVSEVGLLMDEARVLLLQDLVM 225
F +E + L +++++ + D +V L+++ R+LL + V+
Sbjct: 501 HFSIELDCLEAIQLIHKKEDGCRDVDCLLEQIRLLLSHESVI 534
BLAST of Lag0022060 vs. ExPASy TrEMBL
Match:
A0A6J1CDQ4 (uncharacterized protein LOC111010533 OS=Momordica charantia OX=3673 GN=LOC111010533 PE=4 SV=1)
HSP 1 Score: 80.1 bits (196), Expect = 1.4e-11
Identity = 59/196 (30.10%), Postives = 98/196 (50.00%), Query Frame = 0
Query: 32 SILWAVKERLAMLDFELVVVFWWAVWNLRNSLVRGGNVVE-KDLTQRSSDYLASFQRVVA 91
+IL ++ L DFE +VVF W++WN RN+ V VE DL S Y+A+F+
Sbjct: 3 NILRDWRDMLNWKDFEELVVFLWSLWNRRNAFVFNKRRVEDDDLAGWVSTYIATFKATNT 62
Query: 92 FRGVVSSCISLSSSN-------RPTCTWKPSLELDLKLNVDASVNLETGNAG-GGCVLGN 151
+ +S S + W P+ E KL DAS + NAG G ++ +
Sbjct: 63 NHATANQDVSQSFQQSSQIHQAQNHTIWCPAEEGVFKLKTDASFSSIDFNAGLGVIIIRD 122
Query: 152 ARGEVLLATCIFLPRCWCVDVAEDWALLTGVQIARQSGFSQFHVETNSLRLVKILNGESD 211
RG+VL + +L VD AE A + G+++A ++G S +ET+SLR+ + + +
Sbjct: 123 HRGQVLASATKYLEHVASVDDAEALAAVEGLRVAMETGISPILLETDSLRIYNLFARDKE 182
Query: 212 DVSEVGLLMDEARVLL 219
+S+ G +++ + L
Sbjct: 183 GLSKTGSIIEYVKTHL 198
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1DBJ7 | 1.0e-14 | 31.31 | uncharacterized protein LOC111018973 OS=Momordica charantia OX=3673 GN=LOC111018... | [more] |
A0A803QHW9 | 4.4e-13 | 28.91 | Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1 | [more] |
A0A5C7IHD9 | 5.7e-13 | 28.77 | RNase H domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_003117 ... | [more] |
A0A803Q185 | 1.1e-11 | 24.77 | Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1 | [more] |
A0A6J1CDQ4 | 1.4e-11 | 30.10 | uncharacterized protein LOC111010533 OS=Momordica charantia OX=3673 GN=LOC111010... | [more] |
Match Name | E-value | Identity | Description | |