Lag0022045 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0022045
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr7: 16936302 .. 16936981 (+)
RNA-Seq ExpressionLag0022045
SyntenyLag0022045
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTGACGCACCAGCACCAGCACCACCAAGTCGCTGCAAGTATGTTTGTAGCAATCTCCTTGTATTCCTAAAACTTATTAGATTTTGTTATTAGGTATGTTCAAATTTAGTGCCCAAAAATCTACCAGAGTCCAATTTCAATCCGAAATAGGAAAAGAAGAAAAGGGCAGAGAAGAAGAAGAAGAGATAACTGAAGAACTTCTCACCTTCGACTTTCAGTTCCAGAACGAAGCGCAAATTCCATTGTTGCAGCTCGCACCGGAGCTTCCTTCCAATCTCTTCATTTTGTAGCCGATGGCAACCCTCTTCTTCCCCATTCCATTCTTCCATATTATCTGTAAGTATTACGTGTTACCAATTTTTCTCCGTTATGTATATTCTCTCTATCTTGAGCCTTTTCCGTTCTTCTTTGTTTAGGATTATGCCAGACGTGCAAGCCCTTGTGAATGATTTCGTTATCAAGCTTAAGAAGCGGTTAGTTCTTTGGGATTGGTGAATATTTCTCAAAATTGAGTTGTAGCCTATGTTTTAGTTTTTTCGTTTTTATGGTTCGCTTTGTGATGATATTGTGGCAGTAAAATTGAGGGCTCCTTGGCACCGCGAAGCATAGGGCTAAATTGCTTCGTTCTGTCATTTCGCAGCAGCGAATACCCTACACGAACCAGGCGGCTGCTTTAA

mRNA sequence

ATGTTTGACGCACCAGCACCAGCACCACCAAGTCGCTGCAAGTATGTTTTTCCAGAACGAAGCGCAAATTCCATTGTTGCAGCTCGCACCGGAGCTTCCTTCCAATCTCTTCATTTTGTAGCCGATGGCAACCCTCTTCTTCCCCATTCCATTCTTCCATATTATCTGATTATGCCAGACGTGCAAGCCCTTGTGAATGATTTCGTTATCAAGCTTAAGAAGCGTAAAATTGAGGGCTCCTTGGCACCGCGAAGCATAGGGCTAAATTGCTTCGTTCTGTCATTTCGCAGCAGCGAATACCCTACACGAACCAGGCGGCTGCTTTAA

Coding sequence (CDS)

ATGTTTGACGCACCAGCACCAGCACCACCAAGTCGCTGCAAGTATGTTTTTCCAGAACGAAGCGCAAATTCCATTGTTGCAGCTCGCACCGGAGCTTCCTTCCAATCTCTTCATTTTGTAGCCGATGGCAACCCTCTTCTTCCCCATTCCATTCTTCCATATTATCTGATTATGCCAGACGTGCAAGCCCTTGTGAATGATTTCGTTATCAAGCTTAAGAAGCGTAAAATTGAGGGCTCCTTGGCACCGCGAAGCATAGGGCTAAATTGCTTCGTTCTGTCATTTCGCAGCAGCGAATACCCTACACGAACCAGGCGGCTGCTTTAA

Protein sequence

MFDAPAPAPPSRCKYVFPERSANSIVAARTGASFQSLHFVADGNPLLPHSILPYYLIMPDVQALVNDFVIKLKKRKIEGSLAPRSIGLNCFVLSFRSSEYPTRTRRLL
Homology
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BLAST of Lag0022045 vs. NCBI nr
Match: KAG6579110.1 (E3 ubiquitin-protein ligase DIS1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 70.1 bits (170), Expect = 1.3e-08
Identity = 40/52 (76.92%), Postives = 40/52 (76.92%), Query Frame = 0 

Query: 33 SFQSLHF--VADGNPLLPHSILPYYLIMPDVQALVNDFVIKLKKRKIEGSLA 83
          SF S  F  VA G    PH ILPY LIMPDVQALVNDFVIKLKKRKIEGSLA
Sbjct: 42 SFPSNFFISVAGGIHRFPHFILPYSLIMPDVQALVNDFVIKLKKRKIEGSLA 93

The following BLAST results are available for this feature:
BLAST of Lag0022045 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6579110.11.3e-0876.92E3 ubiquitin-protein ligase DIS1, partial [Cucurbita argyrosperma subsp. sororia... [more]
BLAST of Lag0022045 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0022045.1Lag0022045.1mRNA