Lag0022040 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0022040
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	DUF4283 domain-containing protein
Location	chr7: 16763132 .. 16763930 (-)
RNA-Seq Expression	Lag0022040
Synteny	Lag0022040

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAAGGGGGGCAGTAGATGGAGAAGCAGAAGGAAAATCAGACGATGGAGGAGAAGAAATAAAGGGCGAAGGAGAGGCAGGATTGTCGGGTAGAGAAGGAGTTGACGAGGGAAAAACGGGGAAAAACACATATGTTTGCAAGTTTAAAAATAAGAAAACAAAAAGAAGAGTGATTGAAGGCAGCCCATGGATATACGACAAAGCTATAATTTTATTTGATGAACCAAAAGGGAATAAAGAGATCAACGCACTAGAATTCAGGTACGCAAGTTTTTGGGTTCACTTTCATAATCTTCCTATGGTCTGTTTGAACAGGAAATATTAGGGGTGTAAGAAATCGAACCGAACCGGTCGGTTCGGTTTAAAAGGTTATTACAGTAAAGACCGAACCGAACCGAGCGGTTCGATTCGGTTTCGGTTCGCTGGTATAAATACACAAAAATTTTTTGTTGCCCTAATTTTCAGTCTCACTCTCAGCGCCGTCTCCCTCTCTCTACTCTTTTGTTTGCTTCTCTCTCTCTCTCTACTCTCTTTTTCGGTTCGTTCGACGCCTTTCTCTCTCTCTACTCTCTATTTCGGTTCGACGTCGTCTCCCTCGCATTGATCTCCTATTTTTTTTTCTTAGATTTATGTTTGTCTTTGGTATTTTCGGTTCGCCTTTCTGTTCGTCGGCATCAGTTTGGATTTACATGGAAACAAACAAACCTCGTGCTCGTGGTCTCATCGTCGGTTGCTCGATTTCTCCTCACTGGCGCCATTCGTGCTCAAGCATGCTCGATCTCTCCTCGTCGGTGTGA

mRNA sequence

ATGTCAAGGGGGGCAGTAGATGGAGAAGCAGAAGGAAAATCAGACGATGGAGGAGAAGAAATAAAGGGCGAAGGAGAGGCAGGATTGTCGGGTAGAGAAGGAGTTGACGAGGGAAAAACGGGGAAAAACACATATGTTTGCAAGTTTAAAAATAAGAAAACAAAAAGAAGAGTGATTGAAGGCAGCCCATGGATATACGACAAAGCTATAATTTTATTTGATGAACCAAAAGGGAATAAAGAGATCAACGCACTAGAATTCAGATTTATGTTTGTCTTTGGTATTTTCGGTTCGCCTTTCTGTTCGTCGGCATCAGTTTGGATTTACATGGAAACAAACAAACCTCGTGCTCGTGGTCTCATCGTCGGTTGCTCGATTTCTCCTCACTGGCGCCATTCGTGCTCAAGCATGCTCGATCTCTCCTCGTCGGTGTGA

Coding sequence (CDS)

ATGTCAAGGGGGGCAGTAGATGGAGAAGCAGAAGGAAAATCAGACGATGGAGGAGAAGAAATAAAGGGCGAAGGAGAGGCAGGATTGTCGGGTAGAGAAGGAGTTGACGAGGGAAAAACGGGGAAAAACACATATGTTTGCAAGTTTAAAAATAAGAAAACAAAAAGAAGAGTGATTGAAGGCAGCCCATGGATATACGACAAAGCTATAATTTTATTTGATGAACCAAAAGGGAATAAAGAGATCAACGCACTAGAATTCAGATTTATGTTTGTCTTTGGTATTTTCGGTTCGCCTTTCTGTTCGTCGGCATCAGTTTGGATTTACATGGAAACAAACAAACCTCGTGCTCGTGGTCTCATCGTCGGTTGCTCGATTTCTCCTCACTGGCGCCATTCGTGCTCAAGCATGCTCGATCTCTCCTCGTCGGTGTGA

Protein sequence

MSRGAVDGEAEGKSDDGGEEIKGEGEAGLSGREGVDEGKTGKNTYVCKFKNKKTKRRVIEGSPWIYDKAIILFDEPKGNKEINALEFRFMFVFGIFGSPFCSSASVWIYMETNKPRARGLIVGCSISPHWRHSCSSMLDLSSSV

Homology

[Close]

BLAST of Lag0022040 vs. NCBI nr
Match: XP_022154991.1 (uncharacterized protein LOC111022134 isoform X2 [Momordica charantia])

HSP 1 Score: 60.5 bits (145), Expect = 1.4e-05
Identity = 26/86 (30.23%), Postives = 44/86 (51.16%), Query Frame = 0


Query: 41  GKNTYVCKFKNKKTKRRVIEGSPWIYDKAIILFDEPKGNKEINALEFRFMFVFGIFGSPF 100
           GKN ++CKFK  + K +++   PW +DK++++ +EP+ N   N LEFR  +    +    
Sbjct: 84  GKNLFLCKFKTVRDKSKILNNGPWFFDKSMVMLEEPRANCNFNELEFRTNWTTKEYWEWL 143

Query: 101 CSSASVWIYMETNKPRARGLIVGCSI 127
              A         + R R +I+ C I
Sbjct: 144 MDKAG-------EEERRRSMIIACQI 162

[Close]

BLAST of Lag0022040 vs. NCBI nr
Match: XP_022154990.1 (uncharacterized protein LOC111022134 isoform X1 [Momordica charantia])

HSP 1 Score: 59.3 bits (142), Expect = 3.1e-05
Identity = 20/48 (41.67%), Postives = 33/48 (68.75%), Query Frame = 0


Query: 41  GKNTYVCKFKNKKTKRRVIEGSPWIYDKAIILFDEPKGNKEINALEFR 89
           GKN ++CKFK  + K +++   PW +DK++++ +EP+ N   N LEFR
Sbjct: 84  GKNLFLCKFKTVRDKSKILNNGPWFFDKSMVMLEEPRANCNFNELEFR 131

The following BLAST results are available for this feature:

BLAST of Lag0022040 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154991.1	1.4e-05	30.23	uncharacterized protein LOC111022134 isoform X2 [Momordica charantia]	[more]
XP_022154990.1	3.1e-05	41.67	uncharacterized protein LOC111022134 isoform X1 [Momordica charantia]	[more]

BLAST of Lag0022040 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..39
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..42

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0022040.1	Lag0022040.1	mRNA