Lag0022028 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0022028
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Retrotrans_gag domain-containing protein
Location	chr7: 16300292 .. 16301114 (+)
RNA-Seq Expression	Lag0022028
Synteny	Lag0022028

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCACCAACAGCTATCAGTGGTCATCTGAGCGGTCGGGACCGAAAAAGATTGTTGCTGGAGTGTTCGAGATTGACAACATAAGTGCACTTCAGGCCCAAATGTCTTCCCTTGCTAATGCATTTTTAAAGTTTTCAGGTACAGGGAGTGCTCAATCAATTGAGTCTGCAGCTGCCCTTGCATCCCAGACTCAGGAGGAAAATCTCAAGTAGGTTCAATATGTCCTAATTTTAATTCTAGGGGGTACAATAATAATTCTACACCTACACATTATCACCCTAGTAATAGAAATCATGATAATTTTTCTTATGCAAATAACAATGTTCTGAATCCTCCTAGCTTCACCCCTCAAAGTCAAGAAAGTAAGAAATCTCTAGAGGATCTCGTTGGAGATTTTTTTGCAGAATCCAGTAACAGATCAAATAAGCTTGAGGAGGTCGTGATTGCCATAAACAACACTGTCAATGGCCATTCTGCAGCCATCAAGAACATAGAGACTCAACTGGGACAACTGGTAAGTGTTTCAATACCATGAATAAAGGTAAATCCCCAGCTGAACAGGAGAAATCTTCATTGGAGTACTGCAAGGCCGTCTCTGTGCATCACGAGGAAGAGACTCAAGTAGCTGAGGAGAAGGAGACTACTGAAACTGAGGAACTCGCTGGAGATGTTGAGGAGGGCACTACCTCAAATGAAGCTGAAAAGCTTATACCTAAGCCCTCTATCCCTTCTCCTATAGTTTTAGTTCCTAAGTCAAAGAATAAGAAAAAGAAAAATTCTAAGGCCAATTTAATCAGTTTCTTGATGCTTTTACAGGGTTGA

mRNA sequence

ATGGCCACCAACAGCTATCAGTGGTCATCTGAGCGGTCGGGACCGAAAAAGATTGTTGCTGGAGTGTTCGAGATTGACAACATAAGTGCACTTCAGGCCCAAATGTCTTCCCTTGCTAATGCATTTTTAAAGTTTTCAGGTACAGGGAGTGCTCAATCAATTGAGTCTGCAGCTGCCCTTGCATCCCAGACTCAGGAGGAAAATCTCAACCATCAAGAACATAGAGACTCAACTGGGACAACTGGTAAGTGTTTCAATACCATGAATAAAGGTAAATCCCCAGCTGAACAGGAGAAATCTTCATTGGAGTACTGCAAGGCCGTCTCTGTGCATCACGAGGAAGAGACTCAAGTAGCTGAGGAGAAGGAGACTACTGAAACTGAGGAACTCGCTGGAGATGTTGAGGAGGGCACTACCTCAAATGAAGCTGAAAAGCTTATACCTAAGCCCTCTATCCCTTCTCCTATAGTTTTAGTTCCTAAGTCAAAGAATAAGAAAAAGAAAAATTCTAAGGCCAATTTAATCAGTTTCTTGATGCTTTTACAGGGTTGA

Coding sequence (CDS)

ATGGCCACCAACAGCTATCAGTGGTCATCTGAGCGGTCGGGACCGAAAAAGATTGTTGCTGGAGTGTTCGAGATTGACAACATAAGTGCACTTCAGGCCCAAATGTCTTCCCTTGCTAATGCATTTTTAAAGTTTTCAGGTACAGGGAGTGCTCAATCAATTGAGTCTGCAGCTGCCCTTGCATCCCAGACTCAGGAGGAAAATCTCAACCATCAAGAACATAGAGACTCAACTGGGACAACTGGTAAGTGTTTCAATACCATGAATAAAGGTAAATCCCCAGCTGAACAGGAGAAATCTTCATTGGAGTACTGCAAGGCCGTCTCTGTGCATCACGAGGAAGAGACTCAAGTAGCTGAGGAGAAGGAGACTACTGAAACTGAGGAACTCGCTGGAGATGTTGAGGAGGGCACTACCTCAAATGAAGCTGAAAAGCTTATACCTAAGCCCTCTATCCCTTCTCCTATAGTTTTAGTTCCTAAGTCAAAGAATAAGAAAAAGAAAAATTCTAAGGCCAATTTAATCAGTTTCTTGATGCTTTTACAGGGTTGA

Protein sequence

MATNSYQWSSERSGPKKIVAGVFEIDNISALQAQMSSLANAFLKFSGTGSAQSIESAAALASQTQEENLNHQEHRDSTGTTGKCFNTMNKGKSPAEQEKSSLEYCKAVSVHHEEETQVAEEKETTETEELAGDVEEGTTSNEAEKLIPKPSIPSPIVLVPKSKNKKKKNSKANLISFLMLLQG

Homology

[Close]

BLAST of Lag0022028 vs. NCBI nr
Match: XP_022157708.1 (uncharacterized protein LOC111024361 [Momordica charantia])

HSP 1 Score: 61.6 bits (148), Expect = 8.0e-06
Identity = 66/212 (31.13%), Postives = 94/212 (44.34%), Query Frame = 0


Query: 1   MATNSYQWSSERSGPKKIVAGVFEIDNISALQAQMSSLANAFLKFSGTGSAQSIESAAAL 60
           MA NS+QW SERS  KK VAG++EID +S+L+AQ+ +L NA  K SG G++ S E  AA 
Sbjct: 207 MADNSFQWPSERSNAKK-VAGMYEIDELSSLKAQVQALTNAVSKLSGPGTSHSNELVAAT 266

Query: 61  ASQT-------QEENLNHQEHRDST----------------------------------- 120
            + +       Q +  +H   + S+                                   
Sbjct: 267 DTYSYYEPTIEQAQFTSHPAEKKSSLEDLLGAFINECRSRASRIENQVEGMEVKLEGNTT 326

Query: 121 ---------GTTGKCFNTMNKGKSPAEQEKSSLEYCKAVSVHHEEETQVAEEKE------ 155
                    G      NTM KGK P++ E    E+CKAV++   +E Q  E+K+      
Sbjct: 327 SIKNMEVQIGQIAPTLNTMQKGKFPSDIEVKPREHCKAVTLRSGKELQEPEKKKMEEPVI 386

[Close]

BLAST of Lag0022028 vs. NCBI nr
Match: XP_022868848.1 (uncharacterized protein LOC111388394 [Olea europaea var. sylvestris])

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-05
Identity = 33/73 (45.21%), Postives = 50/73 (68.49%), Query Frame = 0


Query: 1  MATNSYQWSSERSGPKKIVAGVFEIDNISALQAQMSSLANAFLKFSGTGSAQSIESAAAL 60
          +ATNSYQW SERSG KK VAG+ E+D I+AL AQ++SL N  +  +  G+ Q ++S  + 
Sbjct: 25 IATNSYQWPSERSGVKK-VAGLHEVDPITALAAQVASLTNQIVTLTTQGNQQKVDSVIST 84

Query: 61 ASQTQEENLNHQE 74
          +S  QE  + +++
Sbjct: 85 SSSNQETEIANEQ 96

[Close]

BLAST of Lag0022028 vs. NCBI nr
Match: XP_022868533.1 (uncharacterized protein LOC111388104 [Olea europaea var. sylvestris])

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-05
Identity = 34/73 (46.58%), Postives = 50/73 (68.49%), Query Frame = 0


Query: 1   MATNSYQWSSERSGPKKIVAGVFEIDNISALQAQMSSLANAFLKFSGTGSAQSIESAAAL 60
           +ATNSYQW SERSG KK VAG+ E+D I+AL AQ+SSL N  +  +  G+ Q ++S  + 
Sbjct: 165 IATNSYQWPSERSGVKK-VAGLHEVDPITALAAQVSSLTNQIVTLTTQGNQQKVDSVMST 224

Query: 61  ASQTQEENLNHQE 74
           +S  QE  + +++
Sbjct: 225 SSSHQETEVANEQ 236

[Close]

BLAST of Lag0022028 vs. NCBI nr
Match: XP_022881095.1 (uncharacterized protein LOC111398428 [Olea europaea var. sylvestris])

HSP 1 Score: 60.8 bits (146), Expect = 1.4e-05
Identity = 42/97 (43.30%), Postives = 59/97 (60.82%), Query Frame = 0


Query: 1   MATNSYQWSSERSGPKKIVAGVFEIDNISALQAQMSSLANAFLKFSGTGSAQSIESAAAL 60
           +ATN+YQWSSERSG KK VAG+ E+D I+AL AQ++SL N  +  +  G+ Q ++S  + 
Sbjct: 25  IATNNYQWSSERSGVKK-VAGLHEVDPITALAAQVASLTNQIVILTTQGNQQKVDSVMST 84

Query: 61  ASQTQEENLNHQEHRDSTGTTGKCFNTMNK-GKSPAE 97
           +S  QE  + +     +T      FNT N  GK P E
Sbjct: 85  SSSRQETEVANDR---NTLQPLPEFNTQNSDGKPPLE 117

[Close]

BLAST of Lag0022028 vs. NCBI nr
Match: XP_022843226.1 (uncharacterized protein LOC111366761 [Olea europaea var. sylvestris])

HSP 1 Score: 60.5 bits (145), Expect = 1.8e-05
Identity = 33/73 (45.21%), Postives = 51/73 (69.86%), Query Frame = 0


Query: 1   MATNSYQWSSERSGPKKIVAGVFEIDNISALQAQMSSLANAFLKFSGTGSAQSIESAAAL 60
           +ATNSYQW SERSG KK VAG+ E+D I+AL AQ++SL N  +  +  G+ Q+++S  + 
Sbjct: 342 IATNSYQWPSERSGVKK-VAGLHEVDPITALAAQVASLTNQIVMLTTQGNQQNVDSVIST 401

Query: 61  ASQTQEENLNHQE 74
           +S  QE  + +++
Sbjct: 402 SSSHQETEVANEQ 413

The following BLAST results are available for this feature:

BLAST of Lag0022028 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022157708.1	8.0e-06	31.13	uncharacterized protein LOC111024361 [Momordica charantia]	[more]
XP_022868848.1	1.1e-05	45.21	uncharacterized protein LOC111388394 [Olea europaea var. sylvestris]	[more]
XP_022868533.1	1.1e-05	46.58	uncharacterized protein LOC111388104 [Olea europaea var. sylvestris]	[more]
XP_022881095.1	1.4e-05	43.30	uncharacterized protein LOC111398428 [Olea europaea var. sylvestris]	[more]
XP_022843226.1	1.8e-05	45.21	uncharacterized protein LOC111366761 [Olea europaea var. sylvestris]	[more]

BLAST of Lag0022028 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..95
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..100
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 112..153

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0022028.1	Lag0022028.1	mRNA