Lag0022008 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0022008
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Reverse transcriptase domain-containing protein
Location	chr7: 15809677 .. 15810018 (-)
RNA-Seq Expression	Lag0022008
Synteny	Lag0022008

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTAGATGGTGGAGCGAGCCCATGGAGGTTCACTGGGATTTACGGGTATCCCCAAGCAGAGCAGAAGGCAATAACATGGGCACTGATGAGGCACCTTCGAGGGAACAGTACGACCCCATGGCTAGTCGGGGGGACTTTAATGCAATTCTATTTGACCATGAGAAGGAGGGTGGAAGGTCAAAACCGACTGGGGAATTAGTTGGGTTTCGGGAGGCGATGGATGTGTGTGAACTGATGGATATGGGATTAAGTGGGTTGAGTTTTACCTGGTGCAATAGGAGGCCAGGGGAGGACATAGTTTGGGAAAGAATTGATAGGTGTGCCGGAAATGTGACATAG

mRNA sequence

ATGGGTAGATGGTGGAGCGAGCCCATGGAGGTTCACTGGGATTTACGGGTATCCCCAAGCAGAGCAGAAGGCAATAACATGGGCACTGATGAGGCACCTTCGAGGGAACAGTACGACCCCATGGCTAGTCGGGGGGACTTTAATGCAATTCTATTTGACCATGAGAAGGAGGGTGGAAGGTCAAAACCGACTGGGGAATTAGTTGGGTTTCGGGAGGCGATGGATGTGTGTGAACTGATGGATATGGGATTAAGTGGGTTGAGTTTTACCTGGTGCAATAGGAGGCCAGGGGAGGACATAGTTTGGGAAAGAATTGATAGGTGTGCCGGAAATGTGACATAG

Coding sequence (CDS)

ATGGGTAGATGGTGGAGCGAGCCCATGGAGGTTCACTGGGATTTACGGGTATCCCCAAGCAGAGCAGAAGGCAATAACATGGGCACTGATGAGGCACCTTCGAGGGAACAGTACGACCCCATGGCTAGTCGGGGGGACTTTAATGCAATTCTATTTGACCATGAGAAGGAGGGTGGAAGGTCAAAACCGACTGGGGAATTAGTTGGGTTTCGGGAGGCGATGGATGTGTGTGAACTGATGGATATGGGATTAAGTGGGTTGAGTTTTACCTGGTGCAATAGGAGGCCAGGGGAGGACATAGTTTGGGAAAGAATTGATAGGTGTGCCGGAAATGTGACATAG

Protein sequence

MGRWWSEPMEVHWDLRVSPSRAEGNNMGTDEAPSREQYDPMASRGDFNAILFDHEKEGGRSKPTGELVGFREAMDVCELMDMGLSGLSFTWCNRRPGEDIVWERIDRCAGNVT

Homology

[Close]

BLAST of Lag0022008 vs. NCBI nr
Match: XP_023924963.1 (uncharacterized protein LOC112036394 [Quercus suber])

HSP 1 Score: 88.6 bits (218), Expect = 3.8e-14
Identity = 38/73 (52.05%), Postives = 46/73 (63.01%), Query Frame = 0


Query: 40  PMASRGDFNAILFDHEKEGGRSKPTGELVGFREAMDVCELMDMGLSGLSFTWCNRRPGED 99
           P    GDFN IL   EK+G   +P  ++ GFR+A+D C L D+G SG  FTWCNRRPGE 
Sbjct: 131 PWVCIGDFNEILRAEEKQGWLDRPERQMQGFRDALDFCSLKDIGYSGFPFTWCNRRPGEH 190

Query: 100 IVWERIDRCAGNV 113
            VW R+DR    V
Sbjct: 191 NVWVRLDRGVATV 203

[Close]

BLAST of Lag0022008 vs. NCBI nr
Match: XP_030925054.1 (uncharacterized protein LOC115952115 [Quercus lobata])

HSP 1 Score: 87.8 bits (216), Expect = 6.5e-14
Identity = 36/73 (49.32%), Postives = 46/73 (63.01%), Query Frame = 0


Query: 40  PMASRGDFNAILFDHEKEGGRSKPTGELVGFREAMDVCELMDMGLSGLSFTWCNRRPGED 99
           P    GDFN IL+  EK+G   +P  ++ GFR+A+D C L D+G +G  FTWCNRRPG  
Sbjct: 258 PWLCIGDFNEILYADEKQGWLDRPERQMQGFRDALDFCRLKDLGFNGFPFTWCNRRPGNQ 317

Query: 100 IVWERIDRCAGNV 113
            VW R+DR    V
Sbjct: 318 NVWIRLDRGVATV 330

[Close]

BLAST of Lag0022008 vs. NCBI nr
Match: XP_030932623.1 (uncharacterized protein LOC115958352 [Quercus lobata])

HSP 1 Score: 87.8 bits (216), Expect = 6.5e-14
Identity = 36/73 (49.32%), Postives = 46/73 (63.01%), Query Frame = 0


Query: 40  PMASRGDFNAILFDHEKEGGRSKPTGELVGFREAMDVCELMDMGLSGLSFTWCNRRPGED 99
           P    GDFN IL+  EK+G   +P  ++ GFR+A+D C L D+G +G  FTWCNRRPG  
Sbjct: 155 PWLCIGDFNEILYADEKQGWLDRPERQMQGFRDALDFCRLKDLGFNGFPFTWCNRRPGNQ 214

Query: 100 IVWERIDRCAGNV 113
            VW R+DR    V
Sbjct: 215 NVWIRLDRGVATV 227

[Close]

BLAST of Lag0022008 vs. NCBI nr
Match: XP_030940247.1 (uncharacterized protein LOC115965211 [Quercus lobata])

HSP 1 Score: 86.3 bits (212), Expect = 1.9e-13
Identity = 36/72 (50.00%), Postives = 45/72 (62.50%), Query Frame = 0


Query: 40  PMASRGDFNAILFDHEKEGGRSKPTGELVGFREAMDVCELMDMGLSGLSFTWCNRRPGED 99
           P    GDFN IL  HEK+GGR++P  ++  FRE +D C   D+G SG  FTWC R  G  
Sbjct: 246 PWLCAGDFNEILRSHEKKGGRARPEVQMRDFREILDECGFADLGFSGQKFTWCKRLAGGV 305

Query: 100 IVWERIDRCAGN 112
           +VWER+DR   N
Sbjct: 306 MVWERLDRAVAN 317

[Close]

BLAST of Lag0022008 vs. NCBI nr
Match: XP_023911983.1 (uncharacterized protein LOC112023603 [Quercus suber])

HSP 1 Score: 85.9 bits (211), Expect = 2.5e-13
Identity = 37/74 (50.00%), Postives = 45/74 (60.81%), Query Frame = 0


Query: 34  SREQYDPMASRGDFNAILFDHEKEGGRSKPTGELVGFREAMDVCELMDMGLSGLSFTWCN 93
           SR    P    GDFN ILF  EK G   +P  ++  FR+A+D C L D+G SG  FTWCN
Sbjct: 125 SRRSVLPWVCMGDFNEILFADEKLGWLDRPERQMQSFRDALDYCRLKDLGFSGYPFTWCN 184

Query: 94  RRPGEDIVWERIDR 108
           RRPG+   W R+DR
Sbjct: 185 RRPGDQNTWIRLDR 198

The following BLAST results are available for this feature:

BLAST of Lag0022008 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023924963.1	3.8e-14	52.05	uncharacterized protein LOC112036394 [Quercus suber]	[more]
XP_030925054.1	6.5e-14	49.32	uncharacterized protein LOC115952115 [Quercus lobata]	[more]
XP_030932623.1	6.5e-14	49.32	uncharacterized protein LOC115958352 [Quercus lobata]	[more]
XP_030940247.1	1.9e-13	50.00	uncharacterized protein LOC115965211 [Quercus lobata]	[more]
XP_023911983.1	2.5e-13	50.00	uncharacterized protein LOC112023603 [Quercus suber]	[more]

BLAST of Lag0022008 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..40
None	No IPR available	PANTHER	PTHR33710:SF35	SUBFAMILY NOT NAMED	coord: 39..108
None	No IPR available	PANTHER	PTHR33710	BNAC02G09200D PROTEIN	coord: 39..108
IPR036691	Endonuclease/exonuclease/phosphatase superfamily	SUPERFAMILY	56219	DNase I-like	coord: 39..108

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0022008.1	Lag0022008.1	mRNA