Lag0022006 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0022006
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionIntegrase catalytic domain-containing protein
Locationchr7: 15781196 .. 15782856 (+)
RNA-Seq ExpressionLag0022006
SyntenyLag0022006
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGTTGATTCTTCATCCACCGCTTCGAAAGATCTTGTTTCACCCATCTTTCTCTTATCAAACATCTGCAACCTTGTTTCCATTCGCTTGGACTCTTCCAATTCTGTTCTCTAGAGGTTTCAATTACACTCCATTTTGAAGGCTCACAAATTGTTCGGTTTCATCGATGGTACCATATCAAAATTGACTTCATCATCTTCCTCAGGTCGTACCTTATGAAGACTGGATTGCCAAGGATCATGCTTTCATGACCTTGATCAACGCGATTCTTTCTCTAGCTGCTTTTGCCTATGTTGTTGGACACGAGACCTCAAAGCAAATGTGGGATACTCTTGTAACTCACTACTCCTCGAGTTCGCGAACAAACATTGTAAGTCTCAAATCTGATCTTCAGTCAATCACTAAAAAGCCTTCTGAAACAATTGATCGATATTTCAAAAGAATTAAAGAACTCAAAGATAAATTGGTGCATGTCTTTGTTGTTATTGACAATGAATATTTGGTAATCTATGCCTTAAATGGTTTGCCTACTGAGTACATTACCTTTAGGACGTCTATGAGAACTTGCGCTACTCCGATTACTTTTGTTGAATTACATGTCCTTGTTTCCGAAGAAATTGCGATTGAGAAACAAATCAAAAGAGACAAAGCATTTTCCTTGTCTACTGCTCTTTTTGTAGCACATAATTCTAATCAGAATTATAATTCAAATTTTGGAAGAAGACGAGGTAAGAACAAAGCTTCAAATTGTGGTAGATTTATGAATTCTGGTAATTCCAAACGCGGTTGTGGCTTTTCCACTGAGTCCACTTCCTGTTGGACAATCTGGATCAAAGTCTCCTAATGATGGATCCTCACATTGTGTTAGTTTGCCAAATCTGTCAACATCTAGGGCACAATGCTCTTGACTGTTATAACAGCATGAACTACAACTATCAAGGAAGATATCCGCCCGTGCAACTGGTTGTTATGGTTGCCAATCTTAATAATGCTAATCTTGCTAATCAGAATTCTTCCTAGTTGACAGACTCTGGATGTAACTCTCATGTTACTGTTGATCTAAGCCAATTTACCTCTACTTCTAAGTATTCTGGTGAAGAACAAGTTGGTGTAGGAAGTGGTCAATCTCTTCCAATAAATCATACAGGTTGTGGTACACTTTGAAGTCATTTCTCTACCTTTTCTCTTCAAAAACTACTTCGTGTTCCCAATATTTCTACTAACCTTTTATCTCGCCTATGTTTGGATAATAATTGCCTTATCATTTTTTATTTTTGCCATTTTAAAATTCAGGACAAATCTTCAGGAACGATCCTCTATTAGCCAATCATGTTGCTCATGTTGGAATAAAGATTTCTTCATCTCTTTCACATAACCGATTAGGACATCTGAATACTTCTGTTCTAAATTTTGTACTTCGTTCTTTGAATTTGTCTCCTTGTAATACTTCTGGCTGTTTCTGTGAACATTGTATTCATGGCAAATTGCATAAGTTGCCCTTTCCATCATCTGATTCTGTTTTTTTACAACCTTTAGAACTTGTTCATGCTGATGTATGGGGTCTTGCCCTTGAAGTCTCTATTAATGGCTTCAATTACTACGTATCTTTTGTAGATGATTACTCTAAATATACATGGCTTTATCCTATCTGTCTTTAA

mRNA sequence

ATGGTTGTTGATTCTTCATCCACCGCTTCGAAAGATCTTGTTTCACCCATCTTTCTCTTATCAAACATCTGCAACCTTGTTTCCATTCGCTTGGACTCTTCCAATTCTGTCGTACCTTATGAAGACTGGATTGCCAAGGATCATGCTTTCATGACCTTGATCAACGCGATTCTTTCTCTAGCTGCTTTTGCCTATGTTGTTGGACACGAGACCTCAAAGCAAATGTGGGATACTCTTGTAACTCACTACTCCTCGAGTTCGCGAACAAACATTGTAAGTCTCAAATCTGATCTTCAGTCAATCACTAAAAAGCCTTCTGAAACAATTGATCGATATTTCAAAAGAATTAAAGAACTCAAAGATAAATTGGTGCATGTCTTTGTTGTTATTGACAATGAATATTTGGTAATCTATGCCTTAAATGGTTTGCCTACTGAGTACATTACCTTTAGGACGTCTATGAGAACTTGCGCTACTCCGATTACTTTTGTTGAATTACATGTCCTTGTTTCCGAAGAAATTGCGATTGAGAAACAAATCAAAAGAGACAAAGCATTTTCCTTGTCTACTGCTCTTTTTGTAGCACATAATTCTAATCAGAATTATAATTCAAATTTTGGAAGAAGACGAGACTCTGGATGTAACTCTCATGTTACTGTTGATCTAAGCCAATTTACCTCTACTTCTAAGTATTCTGGTGAAGAACAAGTTGGTGTAGGAAGTGGTCAATCTCTTCCAATAAATCATACAGGACAAATCTTCAGGAACGATCCTCTATTAGCCAATCATGTTGCTCATGTTGGAATAAAGATTTCTTCATCTCTTTCACATAACCGATTAGGACATCTGAATACTTCTGTTCTAAATTTTGTACTTCGTTCTTTGAATTTGTCTCCTTGTAATACTTCTGGCTGTTTCTGTGAACATTGTATTCATGGCAAATTGCATAAGTTGCCCTTTCCATCATCTGATTCTGTTTTTTTACAACCTTTAGAACTTGTTCATGCTGATGTATGGGGTCTTGCCCTTGAAGTCTCTATTAATGGCTTCAATTACTACGTATCTTTTGTAGATGATTACTCTAAATATACATGGCTTTATCCTATCTGTCTTTAA

Coding sequence (CDS)

ATGGTTGTTGATTCTTCATCCACCGCTTCGAAAGATCTTGTTTCACCCATCTTTCTCTTATCAAACATCTGCAACCTTGTTTCCATTCGCTTGGACTCTTCCAATTCTGTCGTACCTTATGAAGACTGGATTGCCAAGGATCATGCTTTCATGACCTTGATCAACGCGATTCTTTCTCTAGCTGCTTTTGCCTATGTTGTTGGACACGAGACCTCAAAGCAAATGTGGGATACTCTTGTAACTCACTACTCCTCGAGTTCGCGAACAAACATTGTAAGTCTCAAATCTGATCTTCAGTCAATCACTAAAAAGCCTTCTGAAACAATTGATCGATATTTCAAAAGAATTAAAGAACTCAAAGATAAATTGGTGCATGTCTTTGTTGTTATTGACAATGAATATTTGGTAATCTATGCCTTAAATGGTTTGCCTACTGAGTACATTACCTTTAGGACGTCTATGAGAACTTGCGCTACTCCGATTACTTTTGTTGAATTACATGTCCTTGTTTCCGAAGAAATTGCGATTGAGAAACAAATCAAAAGAGACAAAGCATTTTCCTTGTCTACTGCTCTTTTTGTAGCACATAATTCTAATCAGAATTATAATTCAAATTTTGGAAGAAGACGAGACTCTGGATGTAACTCTCATGTTACTGTTGATCTAAGCCAATTTACCTCTACTTCTAAGTATTCTGGTGAAGAACAAGTTGGTGTAGGAAGTGGTCAATCTCTTCCAATAAATCATACAGGACAAATCTTCAGGAACGATCCTCTATTAGCCAATCATGTTGCTCATGTTGGAATAAAGATTTCTTCATCTCTTTCACATAACCGATTAGGACATCTGAATACTTCTGTTCTAAATTTTGTACTTCGTTCTTTGAATTTGTCTCCTTGTAATACTTCTGGCTGTTTCTGTGAACATTGTATTCATGGCAAATTGCATAAGTTGCCCTTTCCATCATCTGATTCTGTTTTTTTACAACCTTTAGAACTTGTTCATGCTGATGTATGGGGTCTTGCCCTTGAAGTCTCTATTAATGGCTTCAATTACTACGTATCTTTTGTAGATGATTACTCTAAATATACATGGCTTTATCCTATCTGTCTTTAA

Protein sequence

MVVDSSSTASKDLVSPIFLLSNICNLVSIRLDSSNSVVPYEDWIAKDHAFMTLINAILSLAAFAYVVGHETSKQMWDTLVTHYSSSSRTNIVSLKSDLQSITKKPSETIDRYFKRIKELKDKLVHVFVVIDNEYLVIYALNGLPTEYITFRTSMRTCATPITFVELHVLVSEEIAIEKQIKRDKAFSLSTALFVAHNSNQNYNSNFGRRRDSGCNSHVTVDLSQFTSTSKYSGEEQVGVGSGQSLPINHTGQIFRNDPLLANHVAHVGIKISSSLSHNRLGHLNTSVLNFVLRSLNLSPCNTSGCFCEHCIHGKLHKLPFPSSDSVFLQPLELVHADVWGLALEVSINGFNYYVSFVDDYSKYTWLYPICL
Homology
BLAST of Lag0022006 vs. NCBI nr
Match: KAG6588985.1 (Retrovirus-related Pol polyprotein from transposon RE1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 228.0 bits (580), Expect = 1.3e-55
Identity = 154/356 (43.26%), Postives = 191/356 (53.65%), Query Frame = 0

Query: 5   SSSTASKDLVSPIFLLSNICNLVSIRLDSSNSVV-------------------------- 64
           SSS+   +L+SPI LLSNICNL+SI+LDS+N V+                          
Sbjct: 8   SSSSTETNLLSPIVLLSNICNLISIKLDSTNYVLWKFQLTTLLKAHKLFGFIDGTQPCPI 67

Query: 65  ---PYEDWIAKDHAFMTLINAILSLAAFAYVVGHETSKQMWDTLVTHYSSSSRTNIVSLK 124
               Y+DW AKD A MT+INA LS  A AYVVG  TSKQ+W+ L   YSSSSR+N+V+LK
Sbjct: 68  SNPSYDDWFAKDQALMTVINATLSPEALAYVVGSTTSKQVWNVLAKLYSSSSRSNVVNLK 127

Query: 125 SDLQSITKKPSETIDRYFKRIKELKDKLVHVFVVIDNEYLVIYALNGLPTEYITFRTSMR 184
           SDLQ+I+KK  E+ID Y KRIKE+KDKL +V  V+++E L+IYALNGLPTEY TFRTSMR
Sbjct: 128 SDLQTISKKSDESIDAYIKRIKEIKDKLANVSTVVNDEDLLIYALNGLPTEYNTFRTSMR 187

Query: 185 TCATPITFVELHVLV-SEEIAIEKQIKRDKAFSLSTALFVAHNSNQNY----NSNF---- 244
           T +TP+TF ELHVL+ +EE A+ KQ KRD      TAL  +  S  +Y    N+NF    
Sbjct: 188 TRSTPVTFEELHVLLKAEESALAKQSKRDDLCKQPTALLASSQSLMSYASTFNNNFVRGR 247

Query: 245 --GRRRDSGC---------------------NSH-------------------------- 253
             GR    GC                     N+H                          
Sbjct: 248 GRGRGHGHGCSSFDTQGRGGGSSQQQQLVVANNHSSCQICLRRGHIALDCFNRMNYNFHG 307

BLAST of Lag0022006 vs. NCBI nr
Match: XP_011658579.1 (uncharacterized protein LOC105436058 [Cucumis sativus])

HSP 1 Score: 228.0 bits (580), Expect = 1.3e-55
Identity = 154/382 (40.31%), Postives = 194/382 (50.79%), Query Frame = 0

Query: 6   SSTASKDLVSPIFLLSNICNLVSIRLDSSN------------------------------ 65
           SS+A KD +SPIFLLSNICNL+S+RLDS+N                              
Sbjct: 9   SSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLFGFVDGTNPCPQT 68

Query: 66  -----SVVP------YEDWIAKDHAFMTLINAILSLAAFAYVVGHETSKQMWDTLVTHYS 125
                S VP      YEDWIAKD A MT+INA LS  A AYVVG  +SKQ+WD L   YS
Sbjct: 69  SPSTTSTVPPQTNPLYEDWIAKDQALMTVINATLSPEALAYVVGSTSSKQVWDVLAKLYS 128

Query: 126 SSSRTNIVSLKSDLQSITKKPSETIDRYFKRIKELKDKLVHVFVVIDNEYLVIYALNGLP 185
           S SR+N+V+LKSDLQ+I KKP E+ID Y KRIKE+KDKL +V   I+ E L+IYALNGLP
Sbjct: 129 SGSRSNVVNLKSDLQTIYKKPDESIDAYIKRIKEIKDKLANVSTFINEEDLLIYALNGLP 188

Query: 186 TEYITFRTSMRTCATPITFVELHVLV-SEEIAIEKQIKRDKAFSLSTALFVAHNS----- 245
            EY TFRTSMRT + P+TF ELHVL+ +EE A+ KQ K D +++  T L  +  S     
Sbjct: 189 NEYNTFRTSMRTRSQPVTFEELHVLLRAEESALAKQSKCDDSYNQPTVLLSSSQSLLSCA 248

Query: 246 ---NQNY------NSNFGRRR--------------------------------------- 255
              N N+        N+G  R                                       
Sbjct: 249 PTFNNNFVRGNGHGKNYGHGRFSFDAQTRGHGLSQEQKPVHDNHATCQICSRRGHTALDC 308

BLAST of Lag0022006 vs. NCBI nr
Match: KAG7015254.1 (hypothetical protein SDJN02_22888, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 225.7 bits (574), Expect = 6.5e-55
Identity = 153/355 (43.10%), Postives = 190/355 (53.52%), Query Frame = 0

Query: 5   SSSTASKDLVSPIFLLSNICNLVSIRLDSSNSVV-------------------------- 64
           SSS+   +L+SPI LLSNICNL+SI+LDS+N V+                          
Sbjct: 8   SSSSTETNLLSPIVLLSNICNLISIKLDSTNYVLWKFQLTTLLKAHKLFGFIDGTQPCPI 67

Query: 65  ---PYEDWIAKDHAFMTLINAILSLAAFAYVVGHETSKQMWDTLVTHYSSSSRTNIVSLK 124
               Y+DW AKD A MT+INA LS  A AYVVG  TSKQ+W+ L   YSSSSR+N+V+LK
Sbjct: 68  SNPSYDDWFAKDQALMTVINATLSPEALAYVVGSTTSKQVWNVLAKLYSSSSRSNVVNLK 127

Query: 125 SDLQSITKKPSETIDRYFKRIKELKDKLVHVFVVIDNEYLVIYALNGLPTEYITFRTSMR 184
           SDLQ+I+KK  E+ID Y KRIKE+KDKL +V  V+++E L+IYALNGLPTEY TFRTSMR
Sbjct: 128 SDLQTISKKSDESIDAYIKRIKEIKDKLANVSTVVNDEDLLIYALNGLPTEYNTFRTSMR 187

Query: 185 TCATPITFVELHVLV-SEEIAIEKQIKRDKAFSLSTALFVAHNSNQNY----NSNF---- 244
           T +TP+TF ELHVL+ +EE A+ KQ KRD      TAL  +  S  +Y    N+NF    
Sbjct: 188 TRSTPVTFEELHVLLKAEESALAKQSKRDDLCKQPTALLASSQSLMSYASTFNNNFVRGR 247

Query: 245 --GRRRDSGC---------------------NSH-------------------------- 252
             GR    GC                     N+H                          
Sbjct: 248 GRGRGHGHGCSSFDTQGRGGGSSQQQQLVVANNHSSCQICLRRGHIALDCFNRMNYNFHG 307

BLAST of Lag0022006 vs. NCBI nr
Match: KAE8645659.1 (hypothetical protein Csa_020439 [Cucumis sativus])

HSP 1 Score: 222.2 bits (565), Expect = 7.2e-54
Identity = 152/379 (40.11%), Postives = 191/379 (50.40%), Query Frame = 0

Query: 6   SSTASKDLVSPIFLLSNICNLVSIRLDSSN------------------------------ 65
           SS+A KD +SPIFLLSNICNL+S+RLDS+N                              
Sbjct: 9   SSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLFGFVDGTNPCPQT 68

Query: 66  -----SVVP------YEDWIAKDHAFMTLINAILSLAAFAYVVGHETSKQMWDTLVTHYS 125
                S VP      YEDWIAKD A MT+INA LS  A AYVVG  +SKQ+WD L   YS
Sbjct: 69  SPSTTSTVPPQTNPLYEDWIAKDQALMTVINATLSPEALAYVVGSTSSKQVWDVLAKLYS 128

Query: 126 SSSRTNIVSLKSDLQSITKKPSETIDRYFKRIKELKDKLVHVFVVIDNEYLVIYALNGLP 185
           S SR+N+V+LKSDLQ+I KKP E+ID Y KRIKE+KDKL +V   I+ E L+IYALNGLP
Sbjct: 129 SGSRSNVVNLKSDLQTIYKKPDESIDAYIKRIKEIKDKLANVSTFINEEDLLIYALNGLP 188

Query: 186 TEYITFRTSMRTCATPITFVELHVLV-SEEIAIEKQIKRDKAFSLSTALFVAHNS----- 245
            EY TFRTSMRT + P+TF ELHVL+ +EE A+ KQ K D +++  T L  +  S     
Sbjct: 189 NEYNTFRTSMRTRSQPVTFEELHVLLRAEESALAKQSKCDDSYNQPTVLLSSSQSLLSCA 248

Query: 246 ---NQNY------NSNFGRRR--------------------------------------- 252
              N N+        N+G  R                                       
Sbjct: 249 PTFNNNFVRGNGHGKNYGHGRFSFDAQTRGHGLSQEQKPVHDNHATCQICSRRGHTALDC 308

BLAST of Lag0022006 vs. NCBI nr
Match: XP_008448008.1 (PREDICTED: uncharacterized protein LOC103490319 isoform X3 [Cucumis melo])

HSP 1 Score: 221.5 bits (563), Expect = 1.2e-53
Identity = 152/384 (39.58%), Postives = 192/384 (50.00%), Query Frame = 0

Query: 6   SSTASKDLVSPIFLLSNICNLVSIRLDSSN------------------------------ 65
           SS+A KD +SPIFLLSNICNL+S+RLDS+N                              
Sbjct: 9   SSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFIDGTNPCPPR 68

Query: 66  -------SVVP------YEDWIAKDHAFMTLINAILSLAAFAYVVGHETSKQMWDTLVTH 125
                  S VP      YEDWIAKD A MT+INA LS  A AYVVG  +SKQ+WD L   
Sbjct: 69  TNNSSSTSTVPPQSNPSYEDWIAKDQALMTVINATLSPEALAYVVGSTSSKQVWDVLAKL 128

Query: 126 YSSSSRTNIVSLKSDLQSITKKPSETIDRYFKRIKELKDKLVHVFVVIDNEYLVIYALNG 185
           YSS SR+N+V+LKSDLQ+I KKP E+ID Y KRIKE+KDKL +V   I+ E L+IYALNG
Sbjct: 129 YSSGSRSNVVNLKSDLQTIYKKPDESIDAYIKRIKEIKDKLANVSTFINEEDLLIYALNG 188

Query: 186 LPTEYITFRTSMRTCATPITFVELHVLV-SEEIAIEKQIKRDKAFSLSTAL--------- 245
           LP EY TFRTSMRT + P+TF ELHVL+ +EE A+ KQ K D +++  T L         
Sbjct: 189 LPNEYNTFRTSMRTRSQPVTFEELHVLLRAEESALAKQSKGDDSYNQPTVLLSSSQSLLS 248

Query: 246 --------FVAHN----------------------------------------------- 255
                   FV  N                                               
Sbjct: 249 CAPTFDNNFVRGNGHGKHYGHGRFSFDAQTRGHGSSPEQKSVHDNHATCQICSRRGHTAL 308

BLAST of Lag0022006 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.4e-15
Identity = 61/229 (26.64%), Postives = 95/229 (41.48%), Query Frame = 0

Query: 211 DSGCNSHVTVDLSQFTSTSKYSGEEQVGVGSGQSLPINHTGQI---FRNDPLLANHVAHV 270
           DSG   H+T D +  +    Y+G + V V  G ++PI+HTG      ++ PL  +++ +V
Sbjct: 334 DSGATHHITSDFNNLSLHQPYTGGDDVMVADGSTIPISHTGSTSLSTKSRPLNLHNILYV 393

Query: 271 ------------------------------------------------------------ 330
                                                                       
Sbjct: 394 PNIHKNLISVYRLCNANGVSVEFFPASFQVKDLNTGVPLLQGKTKDELYEWPIASSQPVS 453

Query: 331 -----GIKISSSLSHNRLGHLNTSVLNFVLRSLNLSPCNTSGCF--CEHCIHGKLHKLPF 370
                  K + S  H RLGH   S+LN V+ + +LS  N S  F  C  C+  K +K+PF
Sbjct: 454 LFASPSSKATHSSWHARLGHPAPSILNSVISNYSLSVLNPSHKFLSCSDCLINKSNKVPF 513

BLAST of Lag0022006 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 3.1e-15
Identity = 65/241 (26.97%), Postives = 99/241 (41.08%), Query Frame = 0

Query: 199 NQNYNSNFGRRRDSGCNSHVTVDLSQFTSTSKYSGEEQVGVGSGQSLPINHTG------- 258
           N  YN+N     DSG   H+T D +  +    Y+G + V +  G ++PI HTG       
Sbjct: 302 NSPYNAN-NWLLDSGATHHITSDFNNLSFHQPYTGGDDVMIADGSTIPITHTGSASLPTS 361

Query: 259 --------------------QIFR-----------------------NDPLL-------- 318
                                ++R                         PLL        
Sbjct: 362 SRSLDLNKVLYVPNIHKNLISVYRLCNTNRVSVEFFPASFQVKDLNTGVPLLQGKTKDEL 421

Query: 319 ----------ANHVAHVGIKISSSLSHNRLGHLNTSVLNFVLRSLNLSPCNTSG--CFCE 370
                      +  A    K + S  H+RLGH + ++LN V+ + +L   N S     C 
Sbjct: 422 YEWPIASSQAVSMFASPCSKATHSSWHSRLGHPSLAILNSVISNHSLPVLNPSHKLLSCS 481

BLAST of Lag0022006 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 4.3e-09
Identity = 34/99 (34.34%), Postives = 57/99 (57.58%), Query Frame = 0

Query: 270 KISSSLSHNRLGHLNTSVLNFVLRSLNLSPC-NTSGCFCEHCIHGKLHKLPFPSSDSVFL 329
           +IS  L H R+GH++   L  + +   +S    T+   C++C+ GK H++ F +S    L
Sbjct: 419 EISVDLWHKRMGHMSEKGLQILAKKSLISYAKGTTVKPCDYCLFGKQHRVSFQTSSERKL 478

Query: 330 QPLELVHADVWGLALEVSINGFNYYVSFVDDYSKYTWLY 368
             L+LV++DV G     S+ G  Y+V+F+DD S+  W+Y
Sbjct: 479 NILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVY 517

BLAST of Lag0022006 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 52.0 bits (123), Expect = 1.7e-05
Identity = 35/103 (33.98%), Postives = 51/103 (49.51%), Query Frame = 0

Query: 275 LSHNRLGHLNTSVL------NFVLRSLNLSPCNTSGCFCEHCIHGKLHKLPFPS-SDSVF 334
           L H R GH++   L      N       L+    S   CE C++GK  +LPF    D   
Sbjct: 417 LWHERFGHISDGKLLEIKRKNMFSDQSLLNNLELSCEICEPCLNGKQARLPFKQLKDKTH 476

Query: 335 L-QPLELVHADVWGLALEVSINGFNYYVSFVDDYSKYTWLYPI 370
           + +PL +VH+DV G    V+++  NY+V FVD ++ Y   Y I
Sbjct: 477 IKRPLFVVHSDVCGPITPVTLDDKNYFVIFVDQFTHYCVTYLI 519

BLAST of Lag0022006 vs. ExPASy Swiss-Prot
Match: P93293 (Uncharacterized mitochondrial protein AtMg00300 OS=Arabidopsis thaliana OX=3702 GN=AtMg00300 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 1.7e-05
Identity = 24/72 (33.33%), Postives = 39/72 (54.17%), Query Frame = 0

Query: 270 KISSSLSHNRLGHLNTSVLNFVLRSLNLSPCNTSGC-FCEHCIHGKLHKLPFPSSDSVFL 329
           K  + L H+RL H++   +  +++   L     S   FCE CI+GK H++ F +      
Sbjct: 66  KDETRLWHSRLAHMSQRGMELLVKKGFLDSSKVSSLKFCEDCIYGKTHRVNFSTGQHTTK 125

Query: 330 QPLELVHADVWG 341
            PL+ VH+D+WG
Sbjct: 126 NPLDYVHSDLWG 137

BLAST of Lag0022006 vs. ExPASy TrEMBL
Match: A0A1S3BIR3 (uncharacterized protein LOC103490319 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103490319 PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 6.0e-54
Identity = 152/384 (39.58%), Postives = 192/384 (50.00%), Query Frame = 0

Query: 6   SSTASKDLVSPIFLLSNICNLVSIRLDSSN------------------------------ 65
           SS+A KD +SPIFLLSNICNL+S+RLDS+N                              
Sbjct: 9   SSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFIDGTNPCPPR 68

Query: 66  -------SVVP------YEDWIAKDHAFMTLINAILSLAAFAYVVGHETSKQMWDTLVTH 125
                  S VP      YEDWIAKD A MT+INA LS  A AYVVG  +SKQ+WD L   
Sbjct: 69  TNNSSSTSTVPPQSNPSYEDWIAKDQALMTVINATLSPEALAYVVGSTSSKQVWDVLAKL 128

Query: 126 YSSSSRTNIVSLKSDLQSITKKPSETIDRYFKRIKELKDKLVHVFVVIDNEYLVIYALNG 185
           YSS SR+N+V+LKSDLQ+I KKP E+ID Y KRIKE+KDKL +V   I+ E L+IYALNG
Sbjct: 129 YSSGSRSNVVNLKSDLQTIYKKPDESIDAYIKRIKEIKDKLANVSTFINEEDLLIYALNG 188

Query: 186 LPTEYITFRTSMRTCATPITFVELHVLV-SEEIAIEKQIKRDKAFSLSTAL--------- 245
           LP EY TFRTSMRT + P+TF ELHVL+ +EE A+ KQ K D +++  T L         
Sbjct: 189 LPNEYNTFRTSMRTRSQPVTFEELHVLLRAEESALAKQSKGDDSYNQPTVLLSSSQSLLS 248

Query: 246 --------FVAHN----------------------------------------------- 255
                   FV  N                                               
Sbjct: 249 CAPTFDNNFVRGNGHGKHYGHGRFSFDAQTRGHGSSPEQKSVHDNHATCQICSRRGHTAL 308

BLAST of Lag0022006 vs. ExPASy TrEMBL
Match: A0A5D3CLI6 (T4.5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001120 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 1.1e-52
Identity = 163/434 (37.56%), Postives = 212/434 (48.85%), Query Frame = 0

Query: 6   SSTASKDLVSPIFLLSNICNLVSIRLDSSN------------------------------ 65
           SS+A KD +SPIFLLSNICNL+S+RLDS+N                              
Sbjct: 9   SSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFIDGTNPCPPR 68

Query: 66  -------SVVP------YEDWIAKDHAFMTLINAILSLAAFAYVVGHETSKQMWDTLVTH 125
                  S VP      YEDWIAKD A MT+INA LS  A AYVVG  +SKQ+WD L   
Sbjct: 69  TNNSSSTSTVPPQSNPSYEDWIAKDQALMTVINATLSPEALAYVVGSTSSKQVWDVLAKL 128

Query: 126 YSSSSRTNIVSLKSDLQSITKKPSETIDRYFKRIKELKDKLVHVFVVIDNEYLVIYALNG 185
           YSS SR+N+V+LKSDLQ+I KKP E+ID Y KRIKE+KDKL +V   I+ E L+IYALNG
Sbjct: 129 YSSGSRSNVVNLKSDLQTIYKKPDESIDAYIKRIKEIKDKLANVSTFINEEDLLIYALNG 188

Query: 186 LPTEYITFRTSMRTCATPITFVELHVLV-SEEIAIEKQIKRDKAFSLSTAL--------- 245
           LP EY TFRTSMRT + P+TF ELHVL+ +EE A+ KQ K D +++  T L         
Sbjct: 189 LPNEYNTFRTSMRTRSQPVTFEELHVLLRAEESALAKQSKGDDSYNQPTVLLSSSQSLLS 248

Query: 246 --------FVAHN----------------------------------------------- 305
                   FV  N                                               
Sbjct: 249 CAPTFDNNFVRGNGHGKHYGHGRFSFDAQTRGHGSSPEQKSVHDNHATCQICSRRGHTAL 308

BLAST of Lag0022006 vs. ExPASy TrEMBL
Match: A0A1S3BI58 (uncharacterized protein LOC103490319 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490319 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 3.3e-52
Identity = 150/381 (39.37%), Postives = 189/381 (49.61%), Query Frame = 0

Query: 6   SSTASKDLVSPIFLLSNICNLVSIRLDSSN------------------------------ 65
           SS+A KD +SPIFLLSNICNL+S+RLDS+N                              
Sbjct: 9   SSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFIDGTNPCPPR 68

Query: 66  -------SVVP------YEDWIAKDHAFMTLINAILSLAAFAYVVGHETSKQMWDTLVTH 125
                  S VP      YEDWIAKD A MT+INA LS  A AYVVG  +SKQ+WD L   
Sbjct: 69  TNNSSSTSTVPPQSNPSYEDWIAKDQALMTVINATLSPEALAYVVGSTSSKQVWDVLAKL 128

Query: 126 YSSSSRTNIVSLKSDLQSITKKPSETIDRYFKRIKELKDKLVHVFVVIDNEYLVIYALNG 185
           YSS SR+N+V+LKSDLQ+I KKP E+ID Y KRIKE+KDKL +V   I+ E L+IYALNG
Sbjct: 129 YSSGSRSNVVNLKSDLQTIYKKPDESIDAYIKRIKEIKDKLANVSTFINEEDLLIYALNG 188

Query: 186 LPTEYITFRTSMRTCATPITFVELHVLV-SEEIAIEKQIKRDKAFSLSTAL--------- 245
           LP EY TFRTSMRT + P+TF ELHVL+ +EE A+ KQ K D +++  T L         
Sbjct: 189 LPNEYNTFRTSMRTRSQPVTFEELHVLLRAEESALAKQSKGDDSYNQPTVLLSSSQSLLS 248

Query: 246 --------FVAHN----------------------------------------------- 252
                   FV  N                                               
Sbjct: 249 CAPTFDNNFVRGNGHGKHYGHGRFSFDAQTRGHGSSPEQKSVHDNHATCQICSRRGHTAL 308

BLAST of Lag0022006 vs. ExPASy TrEMBL
Match: A0A1S4DWT9 (uncharacterized protein LOC103490319 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490319 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 3.3e-52
Identity = 150/381 (39.37%), Postives = 189/381 (49.61%), Query Frame = 0

Query: 6   SSTASKDLVSPIFLLSNICNLVSIRLDSSN------------------------------ 65
           SS+A KD +SPIFLLSNICNL+S+RLDS+N                              
Sbjct: 9   SSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFIDGTNPCPPR 68

Query: 66  -------SVVP------YEDWIAKDHAFMTLINAILSLAAFAYVVGHETSKQMWDTLVTH 125
                  S VP      YEDWIAKD A MT+INA LS  A AYVVG  +SKQ+WD L   
Sbjct: 69  TNNSSSTSTVPPQSNPSYEDWIAKDQALMTVINATLSPEALAYVVGSTSSKQVWDVLAKL 128

Query: 126 YSSSSRTNIVSLKSDLQSITKKPSETIDRYFKRIKELKDKLVHVFVVIDNEYLVIYALNG 185
           YSS SR+N+V+LKSDLQ+I KKP E+ID Y KRIKE+KDKL +V   I+ E L+IYALNG
Sbjct: 129 YSSGSRSNVVNLKSDLQTIYKKPDESIDAYIKRIKEIKDKLANVSTFINEEDLLIYALNG 188

Query: 186 LPTEYITFRTSMRTCATPITFVELHVLV-SEEIAIEKQIKRDKAFSLSTAL--------- 245
           LP EY TFRTSMRT + P+TF ELHVL+ +EE A+ KQ K D +++  T L         
Sbjct: 189 LPNEYNTFRTSMRTRSQPVTFEELHVLLRAEESALAKQSKGDDSYNQPTVLLSSSQSLLS 248

Query: 246 --------FVAHN----------------------------------------------- 252
                   FV  N                                               
Sbjct: 249 CAPTFDNNFVRGNGHGKHYGHGRFSFDAQTRGHGSSPEQKSVHDNHATCQICSRRGHTAL 308

BLAST of Lag0022006 vs. ExPASy TrEMBL
Match: A0A6J1D9L6 (uncharacterized protein LOC111018892 OS=Momordica charantia OX=3673 GN=LOC111018892 PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 1.4e-50
Identity = 155/408 (37.99%), Postives = 188/408 (46.08%), Query Frame = 0

Query: 2   VVDSSSTASKDLVSPIFLLSNICNLVSIRLDSSNSVV----------------------- 61
           +  SS+   KDL SPIFLLSNICNLVSIRLDS++ ++                       
Sbjct: 22  MTSSSTNTKKDLHSPIFLLSNICNLVSIRLDSTDFILWKFQLTAILKAHKLFGFIDGSVS 81

Query: 62  ---------------------------PYEDWIAKDHAFMTLINAILSLAAFAYVVGHET 121
                                       +EDWIAKD A MTLINA LS  A AYVV   T
Sbjct: 82  APSQFLASSSETESQPTTTTSLPVINPHFEDWIAKDQALMTLINATLSAEALAYVVRSGT 141

Query: 122 SKQMWDTLVTHYSSSSRTNIVSLKSDLQSITKKPSETIDRYFKRIKELKDKLVHVFVVID 181
           SKQ+W+ L  HYSS+SRTN+V+LKSDLQSI KK  E+ID Y KRIKE+KDK  +V + I+
Sbjct: 142 SKQVWEVLEKHYSSNSRTNVVNLKSDLQSIVKKTEESIDAYVKRIKEIKDKFANVSITIN 201

Query: 182 NEYLVIYALNGLPTEYITFRTSMRTCATPITFVELHVLV-SEEIAIEKQIKRDKAFSLST 241
           +EYL+IYALNGL TEY T  TSMRT A  ++F ELHV + SEE AIEKQ+KR+   +   
Sbjct: 202 DEYLLIYALNGLSTEYNTLSTSMRTRAQSVSFEELHVFMKSEESAIEKQMKREDLVTQPN 261

Query: 242 ALFVAHNSNQNYNSNF----------------------------GRRRDSG--------- 255
           ALF +   +QN  S F                            GR R SG         
Sbjct: 262 ALFASSPQSQNRTSAFHPNQSHDRGRGKNNGRGKANFAPTFTNQGRGRSSGNFFTSFQAD 321

BLAST of Lag0022006 vs. TAIR 10
Match: ATMG00300.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 52.0 bits (123), Expect = 1.2e-06
Identity = 24/72 (33.33%), Postives = 39/72 (54.17%), Query Frame = 0

Query: 270 KISSSLSHNRLGHLNTSVLNFVLRSLNLSPCNTSGC-FCEHCIHGKLHKLPFPSSDSVFL 329
           K  + L H+RL H++   +  +++   L     S   FCE CI+GK H++ F +      
Sbjct: 66  KDETRLWHSRLAHMSQRGMELLVKKGFLDSSKVSSLKFCEDCIYGKTHRVNFSTGQHTTK 125

Query: 330 QPLELVHADVWG 341
            PL+ VH+D+WG
Sbjct: 126 NPLDYVHSDLWG 137

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6588985.11.3e-5543.26Retrovirus-related Pol polyprotein from transposon RE1, partial [Cucurbita argyr... [more]
XP_011658579.11.3e-5540.31uncharacterized protein LOC105436058 [Cucumis sativus][more]
KAG7015254.16.5e-5543.10hypothetical protein SDJN02_22888, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAE8645659.17.2e-5440.11hypothetical protein Csa_020439 [Cucumis sativus][more]
XP_008448008.11.2e-5339.58PREDICTED: uncharacterized protein LOC103490319 isoform X3 [Cucumis melo][more]
Match NameE-valueIdentityDescription
Q94HW21.4e-1526.64Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
Q9ZT943.1e-1526.97Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
P109784.3e-0934.34Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
P041461.7e-0533.98Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3[more]
P932931.7e-0533.33Uncharacterized mitochondrial protein AtMg00300 OS=Arabidopsis thaliana OX=3702 ... [more]
Match NameE-valueIdentityDescription
A0A1S3BIR36.0e-5439.58uncharacterized protein LOC103490319 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A5D3CLI61.1e-5237.56T4.5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001120 PE=4 SV=... [more]
A0A1S3BI583.3e-5239.37uncharacterized protein LOC103490319 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A1S4DWT93.3e-5239.37uncharacterized protein LOC103490319 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A6J1D9L61.4e-5037.99uncharacterized protein LOC111018892 OS=Momordica charantia OX=3673 GN=LOC111018... [more]
Match NameE-valueIdentityDescription
ATMG00300.11.2e-0633.33Gag-Pol-related retrotransposon family protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 43..167
e-value: 1.3E-18
score: 67.0
NoneNo IPR availablePANTHERPTHR47481FAMILY NOT NAMEDcoord: 21..202
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 323..370
e-value: 6.5E-6
score: 27.5
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 327..369

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0022006.1Lag0022006.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding