Lag0022006 (gene) Sponge gourd (AG‐4) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTTGTTGATTCTTCATCCACCGCTTCGAAAGATCTTGTTTCACCCATCTTTCTCTTATCAAACATCTGCAACCTTGTTTCCATTCGCTTGGACTCTTCCAATTCTGTTCTCTAGAGGTTTCAATTACACTCCATTTTGAAGGCTCACAAATTGTTCGGTTTCATCGATGGTACCATATCAAAATTGACTTCATCATCTTCCTCAGGTCGTACCTTATGAAGACTGGATTGCCAAGGATCATGCTTTCATGACCTTGATCAACGCGATTCTTTCTCTAGCTGCTTTTGCCTATGTTGTTGGACACGAGACCTCAAAGCAAATGTGGGATACTCTTGTAACTCACTACTCCTCGAGTTCGCGAACAAACATTGTAAGTCTCAAATCTGATCTTCAGTCAATCACTAAAAAGCCTTCTGAAACAATTGATCGATATTTCAAAAGAATTAAAGAACTCAAAGATAAATTGGTGCATGTCTTTGTTGTTATTGACAATGAATATTTGGTAATCTATGCCTTAAATGGTTTGCCTACTGAGTACATTACCTTTAGGACGTCTATGAGAACTTGCGCTACTCCGATTACTTTTGTTGAATTACATGTCCTTGTTTCCGAAGAAATTGCGATTGAGAAACAAATCAAAAGAGACAAAGCATTTTCCTTGTCTACTGCTCTTTTTGTAGCACATAATTCTAATCAGAATTATAATTCAAATTTTGGAAGAAGACGAGGTAAGAACAAAGCTTCAAATTGTGGTAGATTTATGAATTCTGGTAATTCCAAACGCGGTTGTGGCTTTTCCACTGAGTCCACTTCCTGTTGGACAATCTGGATCAAAGTCTCCTAATGATGGATCCTCACATTGTGTTAGTTTGCCAAATCTGTCAACATCTAGGGCACAATGCTCTTGACTGTTATAACAGCATGAACTACAACTATCAAGGAAGATATCCGCCCGTGCAACTGGTTGTTATGGTTGCCAATCTTAATAATGCTAATCTTGCTAATCAGAATTCTTCCTAGTTGACAGACTCTGGATGTAACTCTCATGTTACTGTTGATCTAAGCCAATTTACCTCTACTTCTAAGTATTCTGGTGAAGAACAAGTTGGTGTAGGAAGTGGTCAATCTCTTCCAATAAATCATACAGGTTGTGGTACACTTTGAAGTCATTTCTCTACCTTTTCTCTTCAAAAACTACTTCGTGTTCCCAATATTTCTACTAACCTTTTATCTCGCCTATGTTTGGATAATAATTGCCTTATCATTTTTTATTTTTGCCATTTTAAAATTCAGGACAAATCTTCAGGAACGATCCTCTATTAGCCAATCATGTTGCTCATGTTGGAATAAAGATTTCTTCATCTCTTTCACATAACCGATTAGGACATCTGAATACTTCTGTTCTAAATTTTGTACTTCGTTCTTTGAATTTGTCTCCTTGTAATACTTCTGGCTGTTTCTGTGAACATTGTATTCATGGCAAATTGCATAAGTTGCCCTTTCCATCATCTGATTCTGTTTTTTTACAACCTTTAGAACTTGTTCATGCTGATGTATGGGGTCTTGCCCTTGAAGTCTCTATTAATGGCTTCAATTACTACGTATCTTTTGTAGATGATTACTCTAAATATACATGGCTTTATCCTATCTGTCTTTAA ATGGTTGTTGATTCTTCATCCACCGCTTCGAAAGATCTTGTTTCACCCATCTTTCTCTTATCAAACATCTGCAACCTTGTTTCCATTCGCTTGGACTCTTCCAATTCTGTCGTACCTTATGAAGACTGGATTGCCAAGGATCATGCTTTCATGACCTTGATCAACGCGATTCTTTCTCTAGCTGCTTTTGCCTATGTTGTTGGACACGAGACCTCAAAGCAAATGTGGGATACTCTTGTAACTCACTACTCCTCGAGTTCGCGAACAAACATTGTAAGTCTCAAATCTGATCTTCAGTCAATCACTAAAAAGCCTTCTGAAACAATTGATCGATATTTCAAAAGAATTAAAGAACTCAAAGATAAATTGGTGCATGTCTTTGTTGTTATTGACAATGAATATTTGGTAATCTATGCCTTAAATGGTTTGCCTACTGAGTACATTACCTTTAGGACGTCTATGAGAACTTGCGCTACTCCGATTACTTTTGTTGAATTACATGTCCTTGTTTCCGAAGAAATTGCGATTGAGAAACAAATCAAAAGAGACAAAGCATTTTCCTTGTCTACTGCTCTTTTTGTAGCACATAATTCTAATCAGAATTATAATTCAAATTTTGGAAGAAGACGAGACTCTGGATGTAACTCTCATGTTACTGTTGATCTAAGCCAATTTACCTCTACTTCTAAGTATTCTGGTGAAGAACAAGTTGGTGTAGGAAGTGGTCAATCTCTTCCAATAAATCATACAGGACAAATCTTCAGGAACGATCCTCTATTAGCCAATCATGTTGCTCATGTTGGAATAAAGATTTCTTCATCTCTTTCACATAACCGATTAGGACATCTGAATACTTCTGTTCTAAATTTTGTACTTCGTTCTTTGAATTTGTCTCCTTGTAATACTTCTGGCTGTTTCTGTGAACATTGTATTCATGGCAAATTGCATAAGTTGCCCTTTCCATCATCTGATTCTGTTTTTTTACAACCTTTAGAACTTGTTCATGCTGATGTATGGGGTCTTGCCCTTGAAGTCTCTATTAATGGCTTCAATTACTACGTATCTTTTGTAGATGATTACTCTAAATATACATGGCTTTATCCTATCTGTCTTTAA ATGGTTGTTGATTCTTCATCCACCGCTTCGAAAGATCTTGTTTCACCCATCTTTCTCTTATCAAACATCTGCAACCTTGTTTCCATTCGCTTGGACTCTTCCAATTCTGTCGTACCTTATGAAGACTGGATTGCCAAGGATCATGCTTTCATGACCTTGATCAACGCGATTCTTTCTCTAGCTGCTTTTGCCTATGTTGTTGGACACGAGACCTCAAAGCAAATGTGGGATACTCTTGTAACTCACTACTCCTCGAGTTCGCGAACAAACATTGTAAGTCTCAAATCTGATCTTCAGTCAATCACTAAAAAGCCTTCTGAAACAATTGATCGATATTTCAAAAGAATTAAAGAACTCAAAGATAAATTGGTGCATGTCTTTGTTGTTATTGACAATGAATATTTGGTAATCTATGCCTTAAATGGTTTGCCTACTGAGTACATTACCTTTAGGACGTCTATGAGAACTTGCGCTACTCCGATTACTTTTGTTGAATTACATGTCCTTGTTTCCGAAGAAATTGCGATTGAGAAACAAATCAAAAGAGACAAAGCATTTTCCTTGTCTACTGCTCTTTTTGTAGCACATAATTCTAATCAGAATTATAATTCAAATTTTGGAAGAAGACGAGACTCTGGATGTAACTCTCATGTTACTGTTGATCTAAGCCAATTTACCTCTACTTCTAAGTATTCTGGTGAAGAACAAGTTGGTGTAGGAAGTGGTCAATCTCTTCCAATAAATCATACAGGACAAATCTTCAGGAACGATCCTCTATTAGCCAATCATGTTGCTCATGTTGGAATAAAGATTTCTTCATCTCTTTCACATAACCGATTAGGACATCTGAATACTTCTGTTCTAAATTTTGTACTTCGTTCTTTGAATTTGTCTCCTTGTAATACTTCTGGCTGTTTCTGTGAACATTGTATTCATGGCAAATTGCATAAGTTGCCCTTTCCATCATCTGATTCTGTTTTTTTACAACCTTTAGAACTTGTTCATGCTGATGTATGGGGTCTTGCCCTTGAAGTCTCTATTAATGGCTTCAATTACTACGTATCTTTTGTAGATGATTACTCTAAATATACATGGCTTTATCCTATCTGTCTTTAA MVVDSSSTASKDLVSPIFLLSNICNLVSIRLDSSNSVVPYEDWIAKDHAFMTLINAILSLAAFAYVVGHETSKQMWDTLVTHYSSSSRTNIVSLKSDLQSITKKPSETIDRYFKRIKELKDKLVHVFVVIDNEYLVIYALNGLPTEYITFRTSMRTCATPITFVELHVLVSEEIAIEKQIKRDKAFSLSTALFVAHNSNQNYNSNFGRRRDSGCNSHVTVDLSQFTSTSKYSGEEQVGVGSGQSLPINHTGQIFRNDPLLANHVAHVGIKISSSLSHNRLGHLNTSVLNFVLRSLNLSPCNTSGCFCEHCIHGKLHKLPFPSSDSVFLQPLELVHADVWGLALEVSINGFNYYVSFVDDYSKYTWLYPICL Homology
BLAST of Lag0022006 vs. NCBI nr
Match: KAG6588985.1 (Retrovirus-related Pol polyprotein from transposon RE1, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 228.0 bits (580), Expect = 1.3e-55 Identity = 154/356 (43.26%), Postives = 191/356 (53.65%), Query Frame = 0
BLAST of Lag0022006 vs. NCBI nr
Match: XP_011658579.1 (uncharacterized protein LOC105436058 [Cucumis sativus]) HSP 1 Score: 228.0 bits (580), Expect = 1.3e-55 Identity = 154/382 (40.31%), Postives = 194/382 (50.79%), Query Frame = 0
BLAST of Lag0022006 vs. NCBI nr
Match: KAG7015254.1 (hypothetical protein SDJN02_22888, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 225.7 bits (574), Expect = 6.5e-55 Identity = 153/355 (43.10%), Postives = 190/355 (53.52%), Query Frame = 0
BLAST of Lag0022006 vs. NCBI nr
Match: KAE8645659.1 (hypothetical protein Csa_020439 [Cucumis sativus]) HSP 1 Score: 222.2 bits (565), Expect = 7.2e-54 Identity = 152/379 (40.11%), Postives = 191/379 (50.40%), Query Frame = 0
BLAST of Lag0022006 vs. NCBI nr
Match: XP_008448008.1 (PREDICTED: uncharacterized protein LOC103490319 isoform X3 [Cucumis melo]) HSP 1 Score: 221.5 bits (563), Expect = 1.2e-53 Identity = 152/384 (39.58%), Postives = 192/384 (50.00%), Query Frame = 0
BLAST of Lag0022006 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1) HSP 1 Score: 85.5 bits (210), Expect = 1.4e-15 Identity = 61/229 (26.64%), Postives = 95/229 (41.48%), Query Frame = 0
BLAST of Lag0022006 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1) HSP 1 Score: 84.3 bits (207), Expect = 3.1e-15 Identity = 65/241 (26.97%), Postives = 99/241 (41.08%), Query Frame = 0
BLAST of Lag0022006 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1) HSP 1 Score: 63.9 bits (154), Expect = 4.3e-09 Identity = 34/99 (34.34%), Postives = 57/99 (57.58%), Query Frame = 0
BLAST of Lag0022006 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3) HSP 1 Score: 52.0 bits (123), Expect = 1.7e-05 Identity = 35/103 (33.98%), Postives = 51/103 (49.51%), Query Frame = 0
BLAST of Lag0022006 vs. ExPASy Swiss-Prot
Match: P93293 (Uncharacterized mitochondrial protein AtMg00300 OS=Arabidopsis thaliana OX=3702 GN=AtMg00300 PE=4 SV=1) HSP 1 Score: 52.0 bits (123), Expect = 1.7e-05 Identity = 24/72 (33.33%), Postives = 39/72 (54.17%), Query Frame = 0
BLAST of Lag0022006 vs. ExPASy TrEMBL
Match: A0A1S3BIR3 (uncharacterized protein LOC103490319 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103490319 PE=4 SV=1) HSP 1 Score: 221.5 bits (563), Expect = 6.0e-54 Identity = 152/384 (39.58%), Postives = 192/384 (50.00%), Query Frame = 0
BLAST of Lag0022006 vs. ExPASy TrEMBL
Match: A0A5D3CLI6 (T4.5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001120 PE=4 SV=1) HSP 1 Score: 217.2 bits (552), Expect = 1.1e-52 Identity = 163/434 (37.56%), Postives = 212/434 (48.85%), Query Frame = 0
BLAST of Lag0022006 vs. ExPASy TrEMBL
Match: A0A1S3BI58 (uncharacterized protein LOC103490319 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490319 PE=4 SV=1) HSP 1 Score: 215.7 bits (548), Expect = 3.3e-52 Identity = 150/381 (39.37%), Postives = 189/381 (49.61%), Query Frame = 0
BLAST of Lag0022006 vs. ExPASy TrEMBL
Match: A0A1S4DWT9 (uncharacterized protein LOC103490319 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490319 PE=4 SV=1) HSP 1 Score: 215.7 bits (548), Expect = 3.3e-52 Identity = 150/381 (39.37%), Postives = 189/381 (49.61%), Query Frame = 0
BLAST of Lag0022006 vs. ExPASy TrEMBL
Match: A0A6J1D9L6 (uncharacterized protein LOC111018892 OS=Momordica charantia OX=3673 GN=LOC111018892 PE=4 SV=1) HSP 1 Score: 210.3 bits (534), Expect = 1.4e-50 Identity = 155/408 (37.99%), Postives = 188/408 (46.08%), Query Frame = 0
BLAST of Lag0022006 vs. TAIR 10
Match: ATMG00300.1 (Gag-Pol-related retrotransposon family protein ) HSP 1 Score: 52.0 bits (123), Expect = 1.2e-06 Identity = 24/72 (33.33%), Postives = 39/72 (54.17%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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