Lag0021993 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0021993
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionBED-type domain-containing protein
Locationchr7: 15586837 .. 15587447 (-)
RNA-Seq ExpressionLag0021993
SyntenyLag0021993
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGAGATAGAAGAAGATTTGCGGTCAAATTTGAAGGGCTACGAAGTTCTGGACAGTAGCGATGGCGAAGACGACATGTTCCCACCAGATATGACCTACACTGAGCGTAGACAGTACAAAGAAGTTTTGCGTAACTCGAAACAAACTGCGCATGAGGAGGAAGAAGTTCGAAGGAGTGGACTTCATCAAGGTCAGGACTCAAGTAACTTTCAACGATCTAGTAGTATGAAGGAACTTGCATATTACAAGTCAGAAGGGGCTCGACAAAAAAGTATAAAAGACTTGTTCAAGAAGAAGAATTTTGAAGGAGTTGGACGTTTAATCTCTCGATTTTTTATCTATGATAATATCCCTCCAAATAAACTAAAATCCCACCATTTTAAAAATATGGTGGTGGGAATACAACAAGCGGGTAAGCGTGCTTACGTACATTATATTTTCACATTCTTAATATTATTATAGACGTACTTAAATTTAAATTCACTTGGTTGGTCATATTGTTTGTAGGTTCAGATATTAAGCCACCGACGCCGTATGAAACCCGTACCAAATATTTGGACATGGAGTACAAGGAAATGGAAGAATATGTCTGTGCACAACAAAAATGA

mRNA sequence

ATGAAAGAGATAGAAGAAGATTTGCGGTCAAATTTGAAGGGCTACGAAGTTCTGGACAGTAGCGATGGCGAAGACGACATGTTCCCACCAGATATGACCTACACTGAGCGTAGACAGTACAAAGAAGTTTTGCGTAACTCGAAACAAACTGCGCATGAGGAGGAAGAAGTTCGAAGGAGTGGACTTCATCAAGGTTCAGATATTAAGCCACCGACGCCGTATGAAACCCGTACCAAATATTTGGACATGGAGTACAAGGAAATGGAAGAATATGTCTGTGCACAACAAAAATGA

Coding sequence (CDS)

ATGAAAGAGATAGAAGAAGATTTGCGGTCAAATTTGAAGGGCTACGAAGTTCTGGACAGTAGCGATGGCGAAGACGACATGTTCCCACCAGATATGACCTACACTGAGCGTAGACAGTACAAAGAAGTTTTGCGTAACTCGAAACAAACTGCGCATGAGGAGGAAGAAGTTCGAAGGAGTGGACTTCATCAAGGTTCAGATATTAAGCCACCGACGCCGTATGAAACCCGTACCAAATATTTGGACATGGAGTACAAGGAAATGGAAGAATATGTCTGTGCACAACAAAAATGA

Protein sequence

MKEIEEDLRSNLKGYEVLDSSDGEDDMFPPDMTYTERRQYKEVLRNSKQTAHEEEEVRRSGLHQGSDIKPPTPYETRTKYLDMEYKEMEEYVCAQQK
Homology
BLAST of Lag0021993 vs. NCBI nr
Match: XP_034707021.1 (uncharacterized protein LOC117930476 [Vitis riparia])

HSP 1 Score: 65.5 bits (158), Expect = 3.0e-07
Identity = 43/96 (44.79%), Postives = 56/96 (58.33%), Query Frame = 0

Query: 4   IEEDLRSNLKGYEVLDSSDGEDD--MFPPDMTYTERRQYKEVLRNSKQTAHEEEEVRRSG 63
           I+ED   NL G    D  DG+DD  M+P DM   ER  Y+E +R SK  A E    +   
Sbjct: 46  IDEDDEENLGG----DDDDGDDDVYMYPADMHPDERHAYREAVRASK--AAEWNRQQEEH 105

Query: 64  LHQGSDIKPPTPYETRTKYLDMEYKEMEEYVCAQQK 98
             +G  I+P +PYE + KYLDMEYK+ME YV  Q++
Sbjct: 106 FIKGMGIEPSSPYEIKHKYLDMEYKDMEAYVNIQRE 135

BLAST of Lag0021993 vs. NCBI nr
Match: RVX08370.1 (hypothetical protein CK203_017728 [Vitis vinifera])

HSP 1 Score: 61.2 bits (147), Expect = 5.6e-06
Identity = 43/105 (40.95%), Postives = 59/105 (56.19%), Query Frame = 0

Query: 6   EDLRSNLKG----------YEVLDSSDGEDD---MFPPDMTYTERRQYKEVLRNSKQTAH 65
           ED+RS L+G           E  D  D ED+   M+P DM   ER  Y+ V+R SK +  
Sbjct: 92  EDIRSQLRGTMGTHHTHLVNEDDDDEDAEDEDVYMYPTDMHPNERDAYRSVVRASKASNW 151

Query: 66  EEEEVRRSGLHQGSDIKPPTPYETRTKYLDMEYKEMEEYVCAQQK 98
           E   +R   +  G++  PP+PYE + KYL+MEYKEME YV  Q++
Sbjct: 152 EVNNMR---ILNGNE--PPSPYEIKNKYLEMEYKEMEAYVSQQRE 191

BLAST of Lag0021993 vs. NCBI nr
Match: RVW78540.1 (hypothetical protein CK203_049801 [Vitis vinifera])

HSP 1 Score: 60.8 bits (146), Expect = 7.3e-06
Identity = 44/113 (38.94%), Postives = 60/113 (53.10%), Query Frame = 0

Query: 6   EDLRSNLKG----------YEVLDSSDGEDD---MFPPDMTYTERRQYKEVLRNSKQTAH 65
           ED+RS L+G           E  D  D ED+   M+P DM   ER  Y+  +R SK +  
Sbjct: 33  EDIRSQLRGTMGTHHTHLVNEDNDDEDAEDEDVYMYPIDMHPDERDAYRSAVRASKASNW 92

Query: 66  EEEE------VRRSGLHQ--GSDIKPPTPYETRTKYLDMEYKEMEEYVCAQQK 98
           E E+       +R  +    G  I+PP+PYE + KYL+MEYKEME YV  Q++
Sbjct: 93  EREQHENIVGSKRKSVESSTGMGIEPPSPYEIKNKYLEMEYKEMEAYVNQQRE 145

BLAST of Lag0021993 vs. NCBI nr
Match: RVW27943.1 (hypothetical protein CK203_094117 [Vitis vinifera])

HSP 1 Score: 59.7 bits (143), Expect = 1.6e-05
Identity = 47/111 (42.34%), Postives = 60/111 (54.05%), Query Frame = 0

Query: 4   IEEDLRSNLKG-YEVLDSSDGEDD--MFPPDMTYTERRQYKEVLRNSK-------QTAH- 63
           I+ED   NL G     D  DG+DD  M+P DM   ER  Y+E LR SK       Q  H 
Sbjct: 108 IDEDDEENLGGDGGGDDDDDGDDDVYMYPADMHPDERHAYREALRASKAAEWNRQQEEHF 167

Query: 64  ---EEEEV---RRSGLHQGSDIKPPTPYETRTKYLDMEYKEMEEYVCAQQK 98
               E++V   R+        I+PP+PYE + KYLDMEYK+ME YV  Q++
Sbjct: 168 IKTNEKQVVPSRKPWTFDQYGIEPPSPYEIKHKYLDMEYKDMEAYVNIQRE 218

BLAST of Lag0021993 vs. NCBI nr
Match: RVW36353.1 (hypothetical protein CK203_109771 [Vitis vinifera])

HSP 1 Score: 58.5 bits (140), Expect = 3.6e-05
Identity = 37/92 (40.22%), Postives = 50/92 (54.35%), Query Frame = 0

Query: 19  DSSDGEDD---MFPPDMTYTERRQYKEVLRNSKQTAHEEEE----------VRRSGLHQG 78
           D  D ED+   M+P DM   ER  Y+  +R SK +  E E+            +S    G
Sbjct: 14  DDEDVEDEDVYMYPTDMYPDERDAYRSAVRASKSSEWEHEQHENIVGSKHKTGKSSRSAG 73

Query: 79  SDIKPPTPYETRTKYLDMEYKEMEEYVCAQQK 98
             I+PP+PYE + KYL+MEYKEME YV  Q++
Sbjct: 74  MGIEPPSPYEIKNKYLEMEYKEMEAYVNQQRE 105

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_034707021.13.0e-0744.79uncharacterized protein LOC117930476 [Vitis riparia][more]
RVX08370.15.6e-0640.95hypothetical protein CK203_017728 [Vitis vinifera][more]
RVW78540.17.3e-0638.94hypothetical protein CK203_049801 [Vitis vinifera][more]
RVW27943.11.6e-0542.34hypothetical protein CK203_094117 [Vitis vinifera][more]
RVW36353.13.6e-0540.22hypothetical protein CK203_109771 [Vitis vinifera][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 46..75
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 46..63

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0021993.1Lag0021993.1mRNA