Lag0021956 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0021956
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr7: 14588871 .. 14589427 (+)
RNA-Seq Expression	Lag0021956
Synteny	Lag0021956

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAATTATATTGCTTTCCACTTCAATCTGCGGCAAAGGCTTGAGCTCTTCGACGACGAGGGTGGTTTTTCCGAGCGGCGAAATCCGACATTTAGCGAATCTGTCAAGGCGGCGGAGCTGATGTTCGAGATGCCGAATTTCTTCGTCGTGAATTCTCAGTCGGTTCATGTTGGCCGAAGATTTTCGACTCTGATGGCGGATGAGGATCTCGAGATGGGTAATTTGTACGTCATGTTTCCAATGAAGAAGGTGAATTCGGTGGTGTCGGTGGCGGATATGGGTGCGTTGTTCCTCGCCGCCGAGAGGGTGTCCGGCGGGAAGAAGCGGCGGATTGTGGTGGCGGGGAATCTACTGTTTGTGTTTGGTCGGAGGTGGAAACAGAGGTTTAGGAAGGAAGAGTATTTTAGTAAATGCGCGTTTCATAACTTCAATTTTTGCTATTTTTGCAAATTCTTTTGTGGGTTGTCATATTTACAATTAGTTTGGCCCAATTTGCCATCCTTGCAACCGGCCCAAAAAATGATAAATTGGAAAGATGGTTAGTTATGAAATGA

mRNA sequence

ATGGGAAATTATATTGCTTTCCACTTCAATCTGCGGCAAAGGCTTGAGCTCTTCGACGACGAGGGTGGTTTTTCCGAGCGGCGAAATCCGACATTTAGCGAATCTGTCAAGGCGGCGGAGCTGATGTTCGAGATGCCGAATTTCTTCGTCGTGAATTCTCAGTCGGTTCATGTTGGCCGAAGATTTTCGACTCTGATGGCGGATGAGGATCTCGAGATGGGTAATTTGTACGTCATGTTTCCAATGAAGAAGGTGAATTCGGTGGTGTCGGTGGCGGATATGGGTGCGTTGTTCCTCGCCGCCGAGAGGGTGTCCGGCGGGAAGAAGCGGCGGATTGTGGTGGCGGGGAATCTACTGTTTGTGTTTGGTCGGAGGTGGAAACAGAGTTTGGCCCAATTTGCCATCCTTGCAACCGGCCCAAAAAATGATAAATTGGAAAGATGGTTAGTTATGAAATGA

Coding sequence (CDS)

ATGGGAAATTATATTGCTTTCCACTTCAATCTGCGGCAAAGGCTTGAGCTCTTCGACGACGAGGGTGGTTTTTCCGAGCGGCGAAATCCGACATTTAGCGAATCTGTCAAGGCGGCGGAGCTGATGTTCGAGATGCCGAATTTCTTCGTCGTGAATTCTCAGTCGGTTCATGTTGGCCGAAGATTTTCGACTCTGATGGCGGATGAGGATCTCGAGATGGGTAATTTGTACGTCATGTTTCCAATGAAGAAGGTGAATTCGGTGGTGTCGGTGGCGGATATGGGTGCGTTGTTCCTCGCCGCCGAGAGGGTGTCCGGCGGGAAGAAGCGGCGGATTGTGGTGGCGGGGAATCTACTGTTTGTGTTTGGTCGGAGGTGGAAACAGAGTTTGGCCCAATTTGCCATCCTTGCAACCGGCCCAAAAAATGATAAATTGGAAAGATGGTTAGTTATGAAATGA

Protein sequence

MGNYIAFHFNLRQRLELFDDEGGFSERRNPTFSESVKAAELMFEMPNFFVVNSQSVHVGRRFSTLMADEDLEMGNLYVMFPMKKVNSVVSVADMGALFLAAERVSGGKKRRIVVAGNLLFVFGRRWKQSLAQFAILATGPKNDKLERWLVMK

Homology

[Close]

BLAST of Lag0021956 vs. NCBI nr
Match: XP_022993949.1 (uncharacterized protein LOC111489803 [Cucurbita maxima])

HSP 1 Score: 152.5 bits (384), Expect = 2.9e-33
Identity = 78/85 (91.76%), Postives = 79/85 (92.94%), Query Frame = 0


Query: 32  FSESVKAAELMFEMPNFFVVNSQSVHVGRRFSTLMADEDLEMGNLYVMFPMKKVNSVVSV 91
           F E VKAAELMFEMPNFFVVNSQSVHVGRRFS LMADEDLEMGN YV+FPMKKVNSVVSV
Sbjct: 35  FQEPVKAAELMFEMPNFFVVNSQSVHVGRRFSALMADEDLEMGNSYVLFPMKKVNSVVSV 94

Query: 92  ADMGALFLAAERVSGGKKRRIVVAG 117
           ADMGALFLAAERVSGGKKRRIV  G
Sbjct: 95  ADMGALFLAAERVSGGKKRRIVGGG 119

[Close]

BLAST of Lag0021956 vs. NCBI nr
Match: XP_023550655.1 (uncharacterized protein LOC111808736 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 152.5 bits (384), Expect = 2.9e-33
Identity = 78/85 (91.76%), Postives = 79/85 (92.94%), Query Frame = 0


Query: 32  FSESVKAAELMFEMPNFFVVNSQSVHVGRRFSTLMADEDLEMGNLYVMFPMKKVNSVVSV 91
           F E VKAAELMFEMPNFFVVNSQSVHVGRRFS LMADEDLEMGN YV+FPMKKVNSVVSV
Sbjct: 35  FQEPVKAAELMFEMPNFFVVNSQSVHVGRRFSALMADEDLEMGNSYVLFPMKKVNSVVSV 94

Query: 92  ADMGALFLAAERVSGGKKRRIVVAG 117
           ADMGALFLAAERVSGGKKRRIV  G
Sbjct: 95  ADMGALFLAAERVSGGKKRRIVGGG 119

[Close]

BLAST of Lag0021956 vs. NCBI nr
Match: XP_022939318.1 (uncharacterized protein LOC111445271 [Cucurbita moschata])

HSP 1 Score: 152.5 bits (384), Expect = 2.9e-33
Identity = 78/85 (91.76%), Postives = 79/85 (92.94%), Query Frame = 0


Query: 32  FSESVKAAELMFEMPNFFVVNSQSVHVGRRFSTLMADEDLEMGNLYVMFPMKKVNSVVSV 91
           F E VKAAELMFEMPNFFVVNSQSVHVGRRFS LMADEDLEMGN YV+FPMKKVNSVVSV
Sbjct: 35  FQEPVKAAELMFEMPNFFVVNSQSVHVGRRFSALMADEDLEMGNSYVLFPMKKVNSVVSV 94

Query: 92  ADMGALFLAAERVSGGKKRRIVVAG 117
           ADMGALFLAAERVSGGKKRRIV  G
Sbjct: 95  ADMGALFLAAERVSGGKKRRIVGGG 119

[Close]

BLAST of Lag0021956 vs. NCBI nr
Match: KAG6579026.1 (hypothetical protein SDJN03_23474, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 152.1 bits (383), Expect = 3.8e-33
Identity = 77/85 (90.59%), Postives = 79/85 (92.94%), Query Frame = 0


Query: 32  FSESVKAAELMFEMPNFFVVNSQSVHVGRRFSTLMADEDLEMGNLYVMFPMKKVNSVVSV 91
           F E VKAAELMFEMPNFFVVNSQSVHVGRRFS LMADEDLEMGN Y++FPMKKVNSVVSV
Sbjct: 35  FQEPVKAAELMFEMPNFFVVNSQSVHVGRRFSALMADEDLEMGNSYILFPMKKVNSVVSV 94

Query: 92  ADMGALFLAAERVSGGKKRRIVVAG 117
           ADMGALFLAAERVSGGKKRRIV  G
Sbjct: 95  ADMGALFLAAERVSGGKKRRIVGGG 119

[Close]

BLAST of Lag0021956 vs. NCBI nr
Match: KAG7016549.1 (hypothetical protein SDJN02_21658, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 151.4 bits (381), Expect = 6.4e-33
Identity = 77/85 (90.59%), Postives = 79/85 (92.94%), Query Frame = 0


Query: 32  FSESVKAAELMFEMPNFFVVNSQSVHVGRRFSTLMADEDLEMGNLYVMFPMKKVNSVVSV 91
           F E VKAAELMFEMPNFFVVNSQSVHVGRRFS LMADEDLEMGN YV+FPM+KVNSVVSV
Sbjct: 35  FQEPVKAAELMFEMPNFFVVNSQSVHVGRRFSALMADEDLEMGNSYVLFPMRKVNSVVSV 94

Query: 92  ADMGALFLAAERVSGGKKRRIVVAG 117
           ADMGALFLAAERVSGGKKRRIV  G
Sbjct: 95  ADMGALFLAAERVSGGKKRRIVGGG 119

The following BLAST results are available for this feature:

BLAST of Lag0021956 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022993949.1	2.9e-33	91.76	uncharacterized protein LOC111489803 [Cucurbita maxima]	[more]
XP_023550655.1	2.9e-33	91.76	uncharacterized protein LOC111808736 [Cucurbita pepo subsp. pepo]	[more]
XP_022939318.1	2.9e-33	91.76	uncharacterized protein LOC111445271 [Cucurbita moschata]	[more]
KAG6579026.1	3.8e-33	90.59	hypothetical protein SDJN03_23474, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7016549.1	6.4e-33	90.59	hypothetical protein SDJN02_21658, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Lag0021956 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025322	Protein of unknown function DUF4228, plant	PFAM	PF14009	DUF4228	coord: 32..109 e-value: 5.5E-19 score: 69.3
None	No IPR available	PANTHER	PTHR33052	DUF4228 DOMAIN PROTEIN-RELATED	coord: 28..112
None	No IPR available	PANTHER	PTHR33052:SF95	DUF4228 DOMAIN PROTEIN	coord: 28..112

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0021956.1	Lag0021956.1	mRNA