Lag0021877 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0021877
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Ty3/gypsy retrotransposon protein
Location	chr7: 13413286 .. 13414338 (-)
RNA-Seq Expression	Lag0021877
Synteny	Lag0021877

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTATCGCTGGAACGACGAAACGAAAGAAATGGAGCTATTGGTTGAATGGCAAGGCTTACCGGAACACGAGGGGACATGGGAACGCGTCGAGGACTTCCGCAATCAGTTTCCCACATTTCGCCTTGAGGACAAGGTCGATCTGCAGCCCGGGGGTGATGTTAGGCCCCCTGTTATACGGACATAAGCTAGAAGGGACAGAAGCGGAATTCTACCTCCACCCCAGAATTAGTATTTATATGATTTGTCTGTTATTTGTATTTTCATGCTTTATGTGTATTTTGTCTATGTCTTGTGTGAGATAGAGTAGGGAGAGACCCACCCTCTCGAAAGGTGGTTGGTTTGTGTTGTGAGGATACTTGTATCACTTCCAGTGTATTTTGTGAACGTTATATGTATTTTGGAACTTCTTATTAATATCAAGAACGAGGTATCCTATCAGAATCTGTCCCTTCATTGAAGAAAAAGATAGAGAAAAAGTCAGAGGGTGGTAATAAAAAGAAATTAGTCAACGAATTAAAAAAACTTGATTGTTCTGTGAATCATGAGAGAAAGAAAGCTTCTAAGGAAGTGGGGGACGTGTCGGTTTCTTAGTGAAAATTCTAGCTTGGAAAGTGAAGGGGTTGGGGGGAAAGGTTAAGCATTATTTGGTTAAAAAAACTATCTTGTTGGAAAACCTTGATATTGTCATATTGTTGGAATCTAAAAGAGAGTCCGTCAATCTTCAGTTGGTGAGAAGCCTTTGGGTTAATAGGCATGTGGATTGGGAGATTTTGCAGTCCTTTGGAGCCTCGAGAGGTATTTTGTTGCTTTGGGTAGAAGGATGGTCTCCCTTGTAGGGGTGGTTAAGGATTGCTTTTCGGTGTCCATATCCTTTCGGTCCAGAGACGATGAGTTGAGATGGGTGTCAGGGGTGTATGGCCCCCTAGGCAGAAAGGTAGGAAGGCTTTTTGGGAAGAGTTGGGGGATCTCTTTGGCCTGTGCGGATCCTCTGGTGTGTGGCTGGGGACTTCAATGTCATTCGCTCTCCTTTCCTCAGGAGGGAGGGTGA

mRNA sequence

ATGGCCTATCGCTGGAACGACGAAACGAAAGAAATGGAGCTATTGGTTGAATGGCAAGGCTTACCGGAACACGAGGGGACATGGGAACGCGTCGAGGACTTCCGCAATCAGTTTCCCACATTTCGCCTTGAGGACAAGGTCGATCTGCAGCCCGGGGTCCTTTGGAGCCTCGAGAGGTATTTTGTTGCTTTGGGTAGAAGGATGGTCTCCCTTGTAGGGGTGGTTAAGGATTGCTTTTCGGTGTCCATATCCTTTCGGTCCAGAGACGATGAGTTGAGATGGGTGTCAGGGGTGTATGGCCCCCTAGGCAGAAAGGTAGGAAGGCTTTTTGGGAAGAGTTGGGGGATCTCTTTGGCCTGTGCGGATCCTCTGGTGTGTGGCTGGGGACTTCAATGTCATTCGCTCTCCTTTCCTCAGGAGGGAGGGTGA

Coding sequence (CDS)

ATGGCCTATCGCTGGAACGACGAAACGAAAGAAATGGAGCTATTGGTTGAATGGCAAGGCTTACCGGAACACGAGGGGACATGGGAACGCGTCGAGGACTTCCGCAATCAGTTTCCCACATTTCGCCTTGAGGACAAGGTCGATCTGCAGCCCGGGGTCCTTTGGAGCCTCGAGAGGTATTTTGTTGCTTTGGGTAGAAGGATGGTCTCCCTTGTAGGGGTGGTTAAGGATTGCTTTTCGGTGTCCATATCCTTTCGGTCCAGAGACGATGAGTTGAGATGGGTGTCAGGGGTGTATGGCCCCCTAGGCAGAAAGGTAGGAAGGCTTTTTGGGAAGAGTTGGGGGATCTCTTTGGCCTGTGCGGATCCTCTGGTGTGTGGCTGGGGACTTCAATGTCATTCGCTCTCCTTTCCTCAGGAGGGAGGGTGA

Protein sequence

MAYRWNDETKEMELLVEWQGLPEHEGTWERVEDFRNQFPTFRLEDKVDLQPGVLWSLERYFVALGRRMVSLVGVVKDCFSVSISFRSRDDELRWVSGVYGPLGRKVGRLFGKSWGISLACADPLVCGWGLQCHSLSFPQEGG

Homology

[Close]

BLAST of Lag0021877 vs. NCBI nr
Match: TYK28129.1 (Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 71.6 bits (174), Expect = 6.0e-09
Identity = 34/64 (53.12%), Postives = 41/64 (64.06%), Query Frame = 0


Query: 2   AYRWNDETKEMELLVEWQGLPEHEGTWERVEDFRNQFPTFRLEDKVDLQ------PGVLW 60
           AYR N  TKE E+LV W+GLP HE TWE   D + QFP F LEDKVDL+      P +L+
Sbjct: 306 AYRKNQATKEWEVLVSWKGLPPHEATWENCADLKVQFPEFHLEDKVDLEEESDARPPILF 365

[Close]

BLAST of Lag0021877 vs. NCBI nr
Match: TYK23090.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 71.6 bits (174), Expect = 6.0e-09
Identity = 34/64 (53.12%), Postives = 41/64 (64.06%), Query Frame = 0


Query: 2    AYRWNDETKEMELLVEWQGLPEHEGTWERVEDFRNQFPTFRLEDKVDLQ------PGVLW 60
            AYR N  TKE E LV+W+GLP HE TWE   D + QFP F LEDKVDL+      P +L+
Sbjct: 1478 AYRKNQATKEWEALVQWKGLPPHEATWENYADLKVQFPEFHLEDKVDLEEESDARPPILF 1537

[Close]

BLAST of Lag0021877 vs. NCBI nr
Match: KAA0062227.1 (Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 71.6 bits (174), Expect = 6.0e-09
Identity = 32/63 (50.79%), Postives = 42/63 (66.67%), Query Frame = 0


Query: 3   YRWNDETKEMELLVEWQGLPEHEGTWERVEDFRNQFPTFRLEDKVDLQ------PGVLWS 60
           YR N  TK+ E+L+ W+GLP HE TWE   DF++QFP F LEDKVDL+      P +L++
Sbjct: 612 YRKNPNTKDWEVLISWKGLPPHEATWEDCNDFKHQFPDFHLEDKVDLEEESSVKPPILFT 671

[Close]

BLAST of Lag0021877 vs. NCBI nr
Match: TYK15990.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 71.6 bits (174), Expect = 6.0e-09
Identity = 34/64 (53.12%), Postives = 41/64 (64.06%), Query Frame = 0


Query: 2    AYRWNDETKEMELLVEWQGLPEHEGTWERVEDFRNQFPTFRLEDKVDLQ------PGVLW 60
            AYR N  TKE E LV+W+GLP HE TWE   D + QFP F LEDKVDL+      P +L+
Sbjct: 1538 AYRKNQATKEWEALVQWKGLPPHEATWENYADLKVQFPEFHLEDKVDLEEESDARPPILF 1597

[Close]

BLAST of Lag0021877 vs. NCBI nr
Match: KAA0049776.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 71.6 bits (174), Expect = 6.0e-09
Identity = 34/64 (53.12%), Postives = 41/64 (64.06%), Query Frame = 0


Query: 2    AYRWNDETKEMELLVEWQGLPEHEGTWERVEDFRNQFPTFRLEDKVDLQ------PGVLW 60
            AYR N  TKE E LV+W+GLP HE TWE   D + QFP F LEDKVDL+      P +L+
Sbjct: 1478 AYRKNQATKEWEALVQWKGLPPHEATWENYADLKVQFPEFHLEDKVDLEEESDARPPILF 1537

The following BLAST results are available for this feature:

BLAST of Lag0021877 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK28129.1	6.0e-09	53.13	Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]	[more]
TYK23090.1	6.0e-09	53.13	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0062227.1	6.0e-09	50.79	Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]	[more]
TYK15990.1	6.0e-09	53.13	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0049776.1	6.0e-09	53.13	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Lag0021877 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.40		coord: 1..44 e-value: 2.5E-5 score: 25.9
IPR023780	Chromo domain	PFAM	PF00385	Chromo	coord: 1..39 e-value: 5.7E-6 score: 26.1
IPR016197	Chromo-like domain superfamily	SUPERFAMILY	54160	Chromo domain-like	coord: 2..36

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0021877.1	Lag0021877.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009987	cellular process