Lag0021870 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0021870
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr7: 13307172 .. 13308529 (-)
RNA-Seq ExpressionLag0021870
SyntenyLag0021870
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATCCCTTGATCCTGAGGAGATTAGCATCTTGGGTATTTTGGAAAATTCTGTCAATCCCAAGAATATGGGGATTTTGTTGATTCTGTCCAAATATGACCACAAATTGCAATGCATTTCTTCAACTGCTCTGCTTTGATCTTCCTTCAGCTTTCTTCTTCAGATGCGGGCGCAATTGTGGGTGCAACTTGGAGCTTTAATAGACTTATGCACAAAACCAACAAAGTTTTAACACTTTCTTAACAACATAAATTCTTTTTACATCTTTTGAGCACAAATTACACATTTAAGATTTTTTTTTTTAGAAACACACATTTAAGAATTTAAGACATGCTTCACTTGCTTTTGCATAAATTTACTCCAAACACTATGAAATCTAGCACTAACTACTTGCTTTCAAAACAATAAGCTCGATTTTTAAGGCCAATTAACGCACGTAAATGAACGTTATTAACTTCCAATAATTATTAAATATTAAAAAATGAAATTTGAAAGTAGAACTAAGATGAAAAAATCTACTTAGTTATGCTCAAATTATTCACTCACGAGTAGTTCTCAAAGAAAAAATAAAATCACTTACAAGTAACATACACTTTCAAAAACCTTTCTTCAAACTCACTTTCAATGTTTTTTTTAGTTCAACTCATTTTCAATGTTAATCTAACATTAACAAAAAGAAAATGTTAATTTAACATTATCATACCCGACAAGATGTATCATCTAGCCGAAAGTGTGGATTAAAAATTAGGTCTTTTTTTTTTTTTAATCATTTTTCTCCATAGAGAAACAACCAACCAGAATATTCTCAAAGGCAGGCAAAATCCACGTAGTTGGGAAACGACCAAACAGCCTTTCATCGCAATGGGGGATAAGAGCCGAAAACGGAAATGCCCAATTTCAGTATCTGAAAGAAAATGTGTTAGAAACTGCTTTGCCCACATCCGCCACTACAACTACCACTGTCCACTGTACACAATTCAAGTGCTTGCGTACACCTCTAATCTGCCCATTTCTCCGCAGGTAAGTGAGAAATTCTTCATGGGTTTTGATCATATCCCTTCTATTCTTTCTTCCCCACTTCAATTTCAACGTTTTCCTTGGATAATTCATATACCCTTTTCGTAGAATTAACGTGGACGTTGTTGTTTTTATTATCATTTTTTGTTCTTGTTGTAATTTAGAGCCGTGGTGGCCGGAGAAGTGGATTTATTGCTCTGGGGGGTCCGTTTATGTGCTTCTAGCGTCCTTGGAGTTGGAGTTGGTTTGATATTCAGGCTGTACGCCGAGGCAAAGGGCAATTCTGGAAGCCTGCAAGTGATTTCTGGTCGTAATTCTTGGTTTCATTTCATCCACTGA

mRNA sequence

ATGAAATCCCTTGATCCTGAGGAGATTAGCATCTTGGGCAAAATCCACGTAGTTGGGAAACGACCAAACAGCCTTTCATCGCAATGGGGGATAAGAGCCGAAAACGGAAATGCCCAATTTCAGTATCTGAAAGAAAATGTGTTAGAAACTGCTTTGCCCACATCCGCCACTACAACTACCACTGTCCACTGTACACAATTCAAGTGCTTGCGTACACCTCTAATCTGCCCATTTCTCCGCAGAGCCGTGGTGGCCGGAGAAGTGGATTTATTGCTCTGGGGGGTCCGTTTATGTGCTTCTAGCGTCCTTGGAGTTGGAGTTGGTTTGATATTCAGGCTGTACGCCGAGGCAAAGGGCAATTCTGGAAGCCTGCAAGTGATTTCTGGTCGTAATTCTTGGTTTCATTTCATCCACTGA

Coding sequence (CDS)

ATGAAATCCCTTGATCCTGAGGAGATTAGCATCTTGGGCAAAATCCACGTAGTTGGGAAACGACCAAACAGCCTTTCATCGCAATGGGGGATAAGAGCCGAAAACGGAAATGCCCAATTTCAGTATCTGAAAGAAAATGTGTTAGAAACTGCTTTGCCCACATCCGCCACTACAACTACCACTGTCCACTGTACACAATTCAAGTGCTTGCGTACACCTCTAATCTGCCCATTTCTCCGCAGAGCCGTGGTGGCCGGAGAAGTGGATTTATTGCTCTGGGGGGTCCGTTTATGTGCTTCTAGCGTCCTTGGAGTTGGAGTTGGTTTGATATTCAGGCTGTACGCCGAGGCAAAGGGCAATTCTGGAAGCCTGCAAGTGATTTCTGGTCGTAATTCTTGGTTTCATTTCATCCACTGA

Protein sequence

MKSLDPEEISILGKIHVVGKRPNSLSSQWGIRAENGNAQFQYLKENVLETALPTSATTTTTVHCTQFKCLRTPLICPFLRRAVVAGEVDLLLWGVRLCASSVLGVGVGLIFRLYAEAKGNSGSLQVISGRNSWFHFIH
Homology
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BLAST of Lag0021870 vs. NCBI nr
Match: KAG6582006.1 (15-cis-phytoene desaturase, chloroplastic/chromoplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 54.3 bits (129), Expect = 9.7e-04
Identity = 30/51 (58.82%), Postives = 35/51 (68.63%), Query Frame = 0 

Query: 72  TPLICPFLRRAVVAGEVDLLLWGVRLCASSVLGVGVGLIFRLYAEAKGNSG 123
           TPLI  FLRR VVAGEVDLLLWG+      V    + L+F+ YAE +GNSG
Sbjct: 19  TPLIYLFLRRIVVAGEVDLLLWGILFMCFFVF---LELVFKPYAEEQGNSG 66

The following BLAST results are available for this feature:
BLAST of Lag0021870 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6582006.19.7e-0458.8215-cis-phytoene desaturase, chloroplastic/chromoplastic, partial [Cucurbita argy... [more]
BLAST of Lag0021870 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0021870.1Lag0021870.1mRNA