Lag0021849 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0021849
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionTransposon TX1 uncharacterized 149 kDa protein
Locationchr7: 13008193 .. 13008510 (-)
RNA-Seq ExpressionLag0021849
SyntenyLag0021849
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTATCTATTATAGCCAACGAGAAGGTTCTATGGAGGCAATCTTGCAAAGTTAAATGGCTAAATGAGGGGGATGTTAACTCGACTTTCTTCCACCGCACTATGGATGCTCAAAGAAGAAGGAACACCATTGTGGAAATTGTTACAGATTCGGGTTGCAGTCTTATTAATGATAGTGATATTAAGAAGGAATTCTTAGCTTTCTATGGGAAGTTATACACGAAAAAGGGCACCATTGACCCTTTTCCAGGTATAGATGAATGGAACCCCTTATCGGATGCGCAAAGATCTATGCTTGAAGTTCCCTTCACAGAATAG

mRNA sequence

ATGTTATCTATTATAGCCAACGAGAAGGTTCTATGGAGGCAATCTTGCAAAGTTAAATGGCTAAATGAGGGGGATGTTAACTCGACTTTCTTCCACCGCACTATGGATGCTCAAAGAAGAAGGAACACCATTGTGGAAATTGTTACAGATTCGGGTTGCAGTCTTATTAATGATAGTGATATTAAGAAGGAATTCTTAGCTTTCTATGGGAAGTTATACACGAAAAAGGGCACCATTGACCCTTTTCCAGGTATAGATGAATGGAACCCCTTATCGGATGCGCAAAGATCTATGCTTGAAGTTCCCTTCACAGAATAG

Coding sequence (CDS)

ATGTTATCTATTATAGCCAACGAGAAGGTTCTATGGAGGCAATCTTGCAAAGTTAAATGGCTAAATGAGGGGGATGTTAACTCGACTTTCTTCCACCGCACTATGGATGCTCAAAGAAGAAGGAACACCATTGTGGAAATTGTTACAGATTCGGGTTGCAGTCTTATTAATGATAGTGATATTAAGAAGGAATTCTTAGCTTTCTATGGGAAGTTATACACGAAAAAGGGCACCATTGACCCTTTTCCAGGTATAGATGAATGGAACCCCTTATCGGATGCGCAAAGATCTATGCTTGAAGTTCCCTTCACAGAATAG

Protein sequence

MLSIIANEKVLWRQSCKVKWLNEGDVNSTFFHRTMDAQRRRNTIVEIVTDSGCSLINDSDIKKEFLAFYGKLYTKKGTIDPFPGIDEWNPLSDAQRSMLEVPFTE
Homology
[Close]
BLAST of Lag0021849 vs. NCBI nr
Match: RVW90400.1 (Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera])

HSP 1 Score: 89.0 bits (219), Expect = 2.7e-14
Identity = 43/103 (41.75%), Postives = 60/103 (58.25%), Query Frame = 0 

Query: 4   IIANEKVLWRQSCKVKWLNEGDVNSTFFHRTMDAQRRRNTIVEIVTDSGCSLINDSDIKK 63
           +I  E++ WRQ  +VKW+ EGD NS FFH+  + +R R  I E+  +SG  L N   IK+
Sbjct: 350 LILREEIHWRQKARVKWVKEGDCNSKFFHKVANGRRNRKFIKELENESGLMLNNPESIKE 409

Query: 64  EFLAFYGKLY-TKKGTIDPFPGIDEWNPLSDAQRSMLEVPFTE 106
           E L ++ KLY +  G      G+D W+P+     S LE PFTE
Sbjct: 410 EILKYFEKLYASPSGESWRVEGLD-WSPIDGESASRLEFPFTE 451

[Close]
BLAST of Lag0021849 vs. NCBI nr
Match: RVW99790.1 (Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera])

HSP 1 Score: 89.0 bits (219), Expect = 2.7e-14
Identity = 43/103 (41.75%), Postives = 60/103 (58.25%), Query Frame = 0 

Query: 4   IIANEKVLWRQSCKVKWLNEGDVNSTFFHRTMDAQRRRNTIVEIVTDSGCSLINDSDIKK 63
           +I  E++ WRQ  +VKW+ EGD NS FFH+  + +R R  I E+  +SG  L N   IK+
Sbjct: 694 LILREEIHWRQKARVKWVKEGDCNSNFFHKVANGRRNRKFIKELENESGLMLNNPESIKE 753

Query: 64  EFLAFYGKLY-TKKGTIDPFPGIDEWNPLSDAQRSMLEVPFTE 106
           E L ++ KLY +  G      G+D W+P+     S LE PFTE
Sbjct: 754 EILKYFEKLYVSPSGESWRVEGLD-WSPIDGESASRLESPFTE 795

[Close]
BLAST of Lag0021849 vs. NCBI nr
Match: RVW12714.1 (Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera])

HSP 1 Score: 88.6 bits (218), Expect = 3.5e-14
Identity = 43/103 (41.75%), Postives = 60/103 (58.25%), Query Frame = 0 

Query: 4    IIANEKVLWRQSCKVKWLNEGDVNSTFFHRTMDAQRRRNTIVEIVTDSGCSLINDSDIKK 63
            +I  E++ WRQ  +VKW+ EGD NS FFH+  + +R R  I E+  +SG  L N   IK+
Sbjct: 1018 LILREEIHWRQKARVKWVKEGDCNSKFFHKVANGRRNRKFIKELENESGLMLNNPESIKE 1077

Query: 64   EFLAFYGKLY-TKKGTIDPFPGIDEWNPLSDAQRSMLEVPFTE 106
            E L ++ KLY +  G      G+D W+P+     S LE PFTE
Sbjct: 1078 EILKYFEKLYASPSGESWRVEGLD-WSPIDGESASRLESPFTE 1119

[Close]
BLAST of Lag0021849 vs. NCBI nr
Match: RVW14640.1 (Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera])

HSP 1 Score: 88.6 bits (218), Expect = 3.5e-14
Identity = 43/103 (41.75%), Postives = 60/103 (58.25%), Query Frame = 0 

Query: 4   IIANEKVLWRQSCKVKWLNEGDVNSTFFHRTMDAQRRRNTIVEIVTDSGCSLINDSDIKK 63
           +I  E++ WRQ  +VKW+ EGD NS FFH+  + +R R  I E+  +SG  L N   IK+
Sbjct: 106 LILREEIHWRQKARVKWVKEGDCNSKFFHKVANGRRNRKFIKELENESGLMLNNPESIKE 165

Query: 64  EFLAFYGKLY-TKKGTIDPFPGIDEWNPLSDAQRSMLEVPFTE 106
           E L ++ KLY +  G      G+D W+P+     S LE PFTE
Sbjct: 166 EILRYFEKLYASPSGESWRVEGLD-WSPIDGESASRLESPFTE 207

[Close]
BLAST of Lag0021849 vs. NCBI nr
Match: RVW98505.1 (Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera])

HSP 1 Score: 88.6 bits (218), Expect = 3.5e-14
Identity = 43/103 (41.75%), Postives = 60/103 (58.25%), Query Frame = 0 

Query: 4   IIANEKVLWRQSCKVKWLNEGDVNSTFFHRTMDAQRRRNTIVEIVTDSGCSLINDSDIKK 63
           +I  E++ WRQ  +VKW+ EGD NS FFH+  + +R R  I E+  +SG  L N   IK+
Sbjct: 109 LILREEIHWRQKARVKWVKEGDCNSKFFHKVANGRRNRKFIKELENESGLMLNNPESIKE 168

Query: 64  EFLAFYGKLY-TKKGTIDPFPGIDEWNPLSDAQRSMLEVPFTE 106
           E L ++ KLY +  G      G+D W+P+     S LE PFTE
Sbjct: 169 EILRYFEKLYASPSGESWRVEGLD-WSPIDGESASRLESPFTE 210

The following BLAST results are available for this feature:
BLAST of Lag0021849 vs. NCBI nr
Match NameE-valueIdentityDescription
RVW90400.12.7e-1441.75Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera][more]
RVW99790.12.7e-1441.75Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera][more]
RVW12714.13.5e-1441.75Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera][more]
RVW14640.13.5e-1441.75Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera][more]
RVW98505.13.5e-1441.75Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera][more]
BLAST of Lag0021849 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0021849.1Lag0021849.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0050789 regulation of biological process
cellular_component GO:0110165 cellular anatomical entity