Lag0021827 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0021827
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr7: 12698918 .. 12699965 (-)
RNA-Seq ExpressionLag0021827
SyntenyLag0021827
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGAAGAAACAAGGTGGTTGATCTGTTTCCGTTAGATCTTGAGATTAACAGGACTCTAAATTCATTAGAAGAGAAAAAAGATTAACAGAAACGATGGCCCACCAAGAAGAAGCTCCCAAGGCAATTAGAGAATTTTAATTAATTGCTTAAGTTTCGCTTCACCTCCCTGTGGATTCGATACTCGGAATACTTTCCGTTTTATATTACTTGTGGCCCGTGCACTTGCGGATATCGACCCCCAACAGGGTGCGTACACTCTTCTGGGGAAAAAGGTGCTTGGGGAGGCCAAGGAAATTCCCAAGCCTCTCTTCAAGCGTTGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAAGGTGCTTGGGGAGGCCAAGGAAATTCCCGAGCCTCTATTCAAGCGTTGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAAGTGCTTGGGGAGGCCTAGGAAGTTCCCGAGCCTCTCTTCAAGCTGTCATGGTCATCCCAGGGGTGCGTATACTCTTATGGGGAAAAAGTGCTTGGGGAGACCTAGGAAGTTCCCAAGCCTCTCTTCAAGCGCTGTCGTGGTCATCCCAGGGGTGCGAACACTCTTCCAGGGAAAAAGGTGCTTGGGGAGGCCAAGGAAATTCCCGAGCCTCTCTTCAAGCGTTGTGGTCATCCCAGGGGTACGTACACTCTTCTGGGGAAAAAGGTGCTTGGGGAGGCCAAGGAAATTCTCGAGTCTCTCTTCAAGCGCTGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAAGTGCTTGGGGAGGCCTAAGAAATTCCCGAGTCTCTCTTCAAGCTGTCATGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAGCTTGGGGAGGCCGAGGAAATTCCCGAGCCTCTCTTCAAGCATGATGTTCATCCCAGGGGTGTGTACACTCTTCTGGGGAAAAGTTTGGGGAGGCCTAGGAAGTTCTCGGGCCTCTCTTCAAGTACTTGTAAACTTTGTGAAACGAAATTCTTTATTTCAAACTAA

mRNA sequence

ATGCGAAGAAACAAGGGTGCGTACACTCTTCTGGGGAAAAAGGTGCTTGGGGAGGCCAAGGAAATTCCCAAGCCTCTCTTCAAGCGTTGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAAGGTGCTTGGGGAGGCCAAGGAAATTCCCGAGCCTCTATTCAAGCGTTGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAAGTGCTTGGGGAGGCCTAGGAAGTTCCCGAGCCTCTCTTCAAGCTGTCATGGTCATCCCAGGGGTGCGTATACTCTTATGGGGAAAAAGTGCTTGGGGAGACCTAGGAAGTTCCCAAGCCTCTCTTCAAGCGCTGTCGTGGTCATCCCAGGGGTGCGAACACTCTTCCAGGGAAAAAGGTGCTTGGGGAGGCCAAGGAAATTCCCGAGCCTCTCTTCAAGCGTTGTGGTCATCCCAGGGGTACGTACACTCTTCTGGGGAAAAAGGTGCTTGGGGAGGCCAAGGAAATTCTCGAGTCTCTCTTCAAGCGCTGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAAGTGCTTGGGGAGGCCTAAGAAATTCCCGAGTCTCTCTTCAAGCTGTCATGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAGCTTGGGGAGGCCGAGGAAATTCCCGAGCCTCTCTTCAAGCATGATGTTCATCCCAGGGGTGTGTACACTCTTCTGGGGAAAAGTTTGGGGAGGCCTAGGAAGTTCTCGGGCCTCTCTTCAAGTACTTGTAAACTTTGTGAAACGAAATTCTTTATTTCAAACTAA

Coding sequence (CDS)

ATGCGAAGAAACAAGGGTGCGTACACTCTTCTGGGGAAAAAGGTGCTTGGGGAGGCCAAGGAAATTCCCAAGCCTCTCTTCAAGCGTTGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAAGGTGCTTGGGGAGGCCAAGGAAATTCCCGAGCCTCTATTCAAGCGTTGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAAGTGCTTGGGGAGGCCTAGGAAGTTCCCGAGCCTCTCTTCAAGCTGTCATGGTCATCCCAGGGGTGCGTATACTCTTATGGGGAAAAAGTGCTTGGGGAGACCTAGGAAGTTCCCAAGCCTCTCTTCAAGCGCTGTCGTGGTCATCCCAGGGGTGCGAACACTCTTCCAGGGAAAAAGGTGCTTGGGGAGGCCAAGGAAATTCCCGAGCCTCTCTTCAAGCGTTGTGGTCATCCCAGGGGTACGTACACTCTTCTGGGGAAAAAGGTGCTTGGGGAGGCCAAGGAAATTCTCGAGTCTCTCTTCAAGCGCTGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAAGTGCTTGGGGAGGCCTAAGAAATTCCCGAGTCTCTCTTCAAGCTGTCATGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAGCTTGGGGAGGCCGAGGAAATTCCCGAGCCTCTCTTCAAGCATGATGTTCATCCCAGGGGTGTGTACACTCTTCTGGGGAAAAGTTTGGGGAGGCCTAGGAAGTTCTCGGGCCTCTCTTCAAGTACTTGTAAACTTTGTGAAACGAAATTCTTTATTTCAAACTAA

Protein sequence

MRRNKGAYTLLGKKVLGEAKEIPKPLFKRCGHPRGAYTLLGKKVLGEAKEIPEPLFKRCGHPRGAYTLLGKKCLGRPRKFPSLSSSCHGHPRGAYTLMGKKCLGRPRKFPSLSSSAVVVIPGVRTLFQGKRCLGRPRKFPSLSSSVVVIPGVRTLFWGKRCLGRPRKFSSLSSSAVVIPGVRTLFWGKSAWGGLRNSRVSLQAVMVIPGVRTLFWGKLGEAEEIPEPLFKHDVHPRGVYTLLGKSLGRPRKFSGLSSSTCKLCETKFFISN
Homology
The following BLAST results are available for this feature:
BLAST of Lag0021827 vs.
Match NameE-valueIdentityDescription
BLAST of Lag0021827 vs.
Match NameE-valueIdentityDescription
BLAST of Lag0021827 vs.
Match NameE-valueIdentityDescription
BLAST of Lag0021827 vs.
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR017956AT hook, DNA-binding motifSMARTSM00384AT_hook_2coord: 130..142
e-value: 12.0
score: 9.2
coord: 243..255
e-value: 18.0
score: 8.2
coord: 159..171
e-value: 16.0
score: 8.5
coord: 100..112
e-value: 17.0
score: 8.3
coord: 71..83
e-value: 17.0
score: 8.3

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0021827.1Lag0021827.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding