Lag0021819 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0021819
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionReverse transcriptase
Locationchr7: 12584367 .. 12584933 (+)
RNA-Seq ExpressionLag0021819
SyntenyLag0021819
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAACCTTATGCTGGAATGTTCAAGGATTAGAGAGCCCTCGAACATTCAGGAATGTGCACCAAGTGGTGCGAGCAGTGAGTCCCCATCTGTTCTTTGTGTCAGAATCGAAGATTGGAGGGAAGAAAGCAAATGAGTACAAGTGGAAGATGGGTTTTGAAGGTGTTATTGTAGTTGAGTGTGTGGGGAAGAGCGGTGACCTTTGCTTATTTTGGAAGGATAGCTTGGAGGTGGTCCTGAGATCCATGAGTAGGTTCCATATTGATGTAGTTATAAAGGAGGCAAAGGGGCATTGGAGATTTACGGGTTTCTATGGAGATCCGGAGGTGAGTAGCAGGTGCCACTCATGGAATTTGTTGCGGAGGCTTCGTAGTTGTGGATCCTTGTCATGGTTGGTTGGTGGGATTTCAATGAGCTTCTTAGTCAGGATGAGAAGTTGGGAGGTTATCTGCGTAGCCAAATCTAAATGCAATCCTTCAGGGATGCAGTTGATGATTGCGATCTTGTGGGCAAGGGCTTCAAGGGTTTTCCCTTCACCTGGTATAAAACGAAGAATAGGAAGATAG

mRNA sequence

ATGAAAACCTTATGCTGGAATGTTCAAGGATTAGAGAGCCCTCGAACATTCAGGAATGTGCACCAAGTGGTGCGAGCAGTGAGTCCCCATCTGTTCTTTGTGTCAGAATCGAAGATTGGAGGGAAGAAAGCAAATGAGTACAAGTGGAAGATGGGTTTTGAAGGTGTTATTGTAGTTGAGTGTGTGGGGAAGAGCGGTGACCTTTGCTTATTTTGGAAGGATAGCTTGGAGGTGGTCCTGAGATCCATGAGTAGGTTCCATATTGATGTAGTTATAAAGGAGGCAAAGGGGCATTGGAGATTTACGGGTTTCTATGGAGATCCGGAGGTGAGTAGCAGGTGCCACTCATGGAATTTGTTGCGGAGGCTTCGTAGTTGTGGATCCTTGTCATGGTTGGTTGGTGGGATTTCAATGAGCTTCTTAGTCAGGATGAGAAGTTGGGAGGTTATCTGCGTAGCCAAATCTAAATGCAATCCTTCAGGGATGCAGTTGATGATTGCGATCTTGTGGGCAAGGGCTTCAAGGGTTTTCCCTTCACCTGGTATAAAACGAAGAATAGGAAGATAG

Coding sequence (CDS)

ATGAAAACCTTATGCTGGAATGTTCAAGGATTAGAGAGCCCTCGAACATTCAGGAATGTGCACCAAGTGGTGCGAGCAGTGAGTCCCCATCTGTTCTTTGTGTCAGAATCGAAGATTGGAGGGAAGAAAGCAAATGAGTACAAGTGGAAGATGGGTTTTGAAGGTGTTATTGTAGTTGAGTGTGTGGGGAAGAGCGGTGACCTTTGCTTATTTTGGAAGGATAGCTTGGAGGTGGTCCTGAGATCCATGAGTAGGTTCCATATTGATGTAGTTATAAAGGAGGCAAAGGGGCATTGGAGATTTACGGGTTTCTATGGAGATCCGGAGGTGAGTAGCAGGTGCCACTCATGGAATTTGTTGCGGAGGCTTCGTAGTTGTGGATCCTTGTCATGGTTGGTTGGTGGGATTTCAATGAGCTTCTTAGTCAGGATGAGAAGTTGGGAGGTTATCTGCGTAGCCAAATCTAAATGCAATCCTTCAGGGATGCAGTTGATGATTGCGATCTTGTGGGCAAGGGCTTCAAGGGTTTTCCCTTCACCTGGTATAAAACGAAGAATAGGAAGATAG

Protein sequence

MKTLCWNVQGLESPRTFRNVHQVVRAVSPHLFFVSESKIGGKKANEYKWKMGFEGVIVVECVGKSGDLCLFWKDSLEVVLRSMSRFHIDVVIKEAKGHWRFTGFYGDPEVSSRCHSWNLLRRLRSCGSLSWLVGGISMSFLVRMRSWEVICVAKSKCNPSGMQLMIAILWARASRVFPSPGIKRRIGR
Homology
BLAST of Lag0021819 vs. NCBI nr
Match: XP_041001573.1 (uncharacterized protein LOC121247264 [Juglans microcarpa x Juglans regia])

HSP 1 Score: 132.9 bits (333), Expect = 2.9e-27
Identity = 62/136 (45.59%), Postives = 83/136 (61.03%), Query Frame = 0

Query: 1   MKTLCWNVQGLESPRTFRNVHQVVRAVSPHLFFVSESKIGGKKANEYKWKMGFEGVIVVE 60
           MKT+CWN  GL +P   R +  ++      L F+ E+K+  +     K+K+GF     ++
Sbjct: 1   MKTICWNSHGLGNPLEIRALRDLITRKGLDLLFLQETKLTVRGMEACKFKLGFTNCFSID 60

Query: 61  CVGKSGDLCLFWKDSLEVVLRSMSRFHIDVVIK-EAKGHWRFTGFYGDPEVSSRCHSWNL 120
            VG+SG L L W   L V L+S SR+HIDV IK E    WRFTG YG+PEVSSRC +WNL
Sbjct: 61  SVGRSGGLSLIWNSDLGVELKSFSRYHIDVHIKTEDLWEWRFTGLYGNPEVSSRCSTWNL 120

Query: 121 LRRLRSCGSLSWLVGG 136
           +R L S   + WL+GG
Sbjct: 121 IRTLNSIEQIPWLLGG 136

BLAST of Lag0021819 vs. NCBI nr
Match: XP_024021734.1 (uncharacterized protein LOC112091706 [Morus notabilis])

HSP 1 Score: 132.5 bits (332), Expect = 3.8e-27
Identity = 61/136 (44.85%), Postives = 85/136 (62.50%), Query Frame = 0

Query: 1   MKTLCWNVQGLESPRTFRNVHQVVRAVSPHLFFVSESKIGGKKANEYKWKMGFEGVIVVE 60
           M  + WNV+GL +PR F  +  ++R  SP L F+ E+++  K A   K + GF G   V+
Sbjct: 1   MSLISWNVRGLGNPRAFDKLRMLIRDTSPSLAFLMETRLRSKAAESVKRRCGFHGGFYVD 60

Query: 61  CVGKSGDLCLFWKDSLEVVLRSMSRFHIDVVIKEAKG-HWRFTGFYGDPEVSSRCHSWNL 120
           C G+SG L L WK+ +EV ++S S+ HID  ++   G  WRFTGFYG+P  S R HSW L
Sbjct: 61  CSGRSGGLMLMWKEEVEVHIQSYSQSHIDCHVRFPHGVWWRFTGFYGNPSRSDRHHSWTL 120

Query: 121 LRRLRSCGSLSWLVGG 136
           L RL+S  +L W+V G
Sbjct: 121 LLRLKSLSNLPWVVAG 136

BLAST of Lag0021819 vs. NCBI nr
Match: KAA3469443.1 (reverse transcriptase [Gossypium australe])

HSP 1 Score: 132.1 bits (331), Expect = 5.0e-27
Identity = 64/136 (47.06%), Postives = 86/136 (63.24%), Query Frame = 0

Query: 1   MKTLCWNVQGLESPRTFRNVHQVVRAVSPHLFFVSESKIGGKKANEYKWKMGFEGVIVVE 60
           MK+LCWNV GL SPR  R +  +V+  +PHL F+ E+K+  K+  + + K GF   I VE
Sbjct: 1   MKSLCWNVLGLGSPRAVRRLCFLVKQHNPHLLFLMETKLDKKRMEKVRRKCGFVHGIEVE 60

Query: 61  CVGKSGDLCLFWKDSLEVVLRSMSRFHIDVVIKE-AKGHWRFTGFYGDPEVSSRCHSWNL 120
             G  G LC+ WK+ + V LRS SR+HIDV+I++  +  WR+TGFYG P +  +   WNL
Sbjct: 61  AEGSRGGLCMAWKNDISVSLRSFSRWHIDVLIEDNLEEEWRYTGFYGFPYLKDKNPVWNL 120

Query: 121 LRRLRSCGSLSWLVGG 136
           LRRL     L WLV G
Sbjct: 121 LRRLAKESDLHWLVEG 136

BLAST of Lag0021819 vs. NCBI nr
Match: KAA3453480.1 (reverse transcriptase [Gossypium australe])

HSP 1 Score: 130.2 bits (326), Expect = 1.9e-26
Identity = 62/137 (45.26%), Postives = 80/137 (58.39%), Query Frame = 0

Query: 1   MKTLCWNVQGLESPRTFRNVHQVVRAVSPHLFFVSESKIGGKKANEYKWKMGFEGVIVVE 60
           MK  CWN +GL SPR  R +  +++   PHL F+ E+K+  K  +  +   GF   I VE
Sbjct: 1   MKHFCWNARGLGSPRAVRRLRYILKQHHPHLVFLMETKLDSKCMDRVRRSCGFTNGINVE 60

Query: 61  CVGKSGDLCLFWKDSLEVVLRSMSRFHIDVVIKE--AKGHWRFTGFYGDPEVSSRCHSWN 120
             G  G LCL W+D + V LRS S++HIDV+IKE   +  WRFTGFYG P V  + + WN
Sbjct: 61  AEGSRGGLCLAWRDDIGVTLRSYSKWHIDVLIKEEGIQEEWRFTGFYGSPYVRDQKYVWN 120

Query: 121 LLRRLRSCGSLSWLVGG 136
           LL RL       WLV G
Sbjct: 121 LLERLSQDKDYPWLVAG 137

BLAST of Lag0021819 vs. NCBI nr
Match: KAA3485417.1 (reverse transcriptase [Gossypium australe])

HSP 1 Score: 128.3 bits (321), Expect = 7.2e-26
Identity = 58/137 (42.34%), Postives = 80/137 (58.39%), Query Frame = 0

Query: 1   MKTLCWNVQGLESPRTFRNVHQVVRAVSPHLFFVSESKIGGKKANEYKWKMGFEGVIVVE 60
           MKT+CWNV+GL SPR  R +  + +  +PH+ F+ E+K+  K+    + +  F     +E
Sbjct: 1   MKTICWNVRGLGSPRAVRRLRYLCKQQNPHIVFLMETKLNQKRMESVRRRCSFSSGFEIE 60

Query: 61  CVGKSGDLCLFWKDSLEVVLRSMSRFHIDVVIKEA--KGHWRFTGFYGDPEVSSRCHSWN 120
             G  G LCL WKD + V LRS S++HID ++ E   +  WRFTGFYG P    R   W+
Sbjct: 61  AEGSRGGLCLAWKDDIVVTLRSYSKWHIDALLWEGSIQKEWRFTGFYGSPYSKERNSVWS 120

Query: 121 LLRRLRSCGSLSWLVGG 136
           LL+RL    S  WLV G
Sbjct: 121 LLKRLSQGNSYPWLVAG 137

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_041001573.12.9e-2745.59uncharacterized protein LOC121247264 [Juglans microcarpa x Juglans regia][more]
XP_024021734.13.8e-2744.85uncharacterized protein LOC112091706 [Morus notabilis][more]
KAA3469443.15.0e-2747.06reverse transcriptase [Gossypium australe][more]
KAA3453480.11.9e-2645.26reverse transcriptase [Gossypium australe][more]
KAA3485417.17.2e-2642.34reverse transcriptase [Gossypium australe][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036691Endonuclease/exonuclease/phosphatase superfamilyGENE3D3.60.10.10Endonuclease/exonuclease/phosphatasecoord: 1..135
e-value: 1.1E-8
score: 37.2
IPR036691Endonuclease/exonuclease/phosphatase superfamilySUPERFAMILY56219DNase I-likecoord: 1..135

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0021819.1Lag0021819.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0090304 nucleic acid metabolic process
molecular_function GO:0003824 catalytic activity