Lag0021768 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0021768
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Protein V2
Location	chr7: 11675100 .. 11675405 (-)
RNA-Seq Expression	Lag0021768
Synteny	Lag0021768

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCGATCCATTATTAAATCCCCTGCCCGACACTGTTCATGGCCTGCGTGTTATGTTGGCCGTTAAATATCTTCAATTGATTGAAGAAAAATACAACCCAAATACTTTGGACTTTGATTTGGTAAGGGATTTAATTGCAGTTGTCCGTTGTCGTCTTTACAATGAGGCAACTTGTAGATTAACTGCGTACAGCATTCGCCGGGATGGTGCGACGGATGTAGATCTTAAACGTCCAACTGTTGCTGTCTGTGCCTGCCCAAGACACGGGCGGATAGCTGTGGAAGCGAACCCAGTCCTACCGTAA

mRNA sequence

ATGTTCGATCCATTATTAAATCCCCTGCCCGACACTGTTCATGGCCTGCGTGTTATGTTGGCCGTTAAATATCTTCAATTGATTGAAGAAAAATACAACCCAAATACTTTGGACTTTGATTTGGTAAGGGATTTAATTGCAGTTGTCCGTTGTCGTCTTTACAATGAGGCAACTTGTAGATTAACTGCGTACAGCATTCGCCGGGATGGTGCGACGGATGTAGATCTTAAACGTCCAACTGTTGCTGTCTGTGCCTGCCCAAGACACGGGCGGATAGCTGTGGAAGCGAACCCAGTCCTACCGTAA

Coding sequence (CDS)

ATGTTCGATCCATTATTAAATCCCCTGCCCGACACTGTTCATGGCCTGCGTGTTATGTTGGCCGTTAAATATCTTCAATTGATTGAAGAAAAATACAACCCAAATACTTTGGACTTTGATTTGGTAAGGGATTTAATTGCAGTTGTCCGTTGTCGTCTTTACAATGAGGCAACTTGTAGATTAACTGCGTACAGCATTCGCCGGGATGGTGCGACGGATGTAGATCTTAAACGTCCAACTGTTGCTGTCTGTGCCTGCCCAAGACACGGGCGGATAGCTGTGGAAGCGAACCCAGTCCTACCGTAA

Protein sequence

MFDPLLNPLPDTVHGLRVMLAVKYLQLIEEKYNPNTLDFDLVRDLIAVVRCRLYNEATCRLTAYSIRRDGATDVDLKRPTVAVCACPRHGRIAVEANPVLP

Homology

[Close]

BLAST of Lag0021768 vs. NCBI nr
Match: ABY54997.1 (V2, partial [Tomato yellow leaf curl Sardinia virus])

HSP 1 Score: 108.6 bits (270), Expect = 3.2e-20
Identity = 49/87 (56.32%), Postives = 64/87 (73.56%), Query Frame = 0


Query: 1  MFDPLLNPLPDTVHGLRVMLAVKYLQLIEEKYNPNTLDFDLVRDLIAVVRCRLYNEATCR 60
          M+DPLLN  PD+VHGLR MLA+KYLQL+EE Y PNTL  DL+RDLI+V+R R Y EA  R
Sbjct: 1  MWDPLLNEFPDSVHGLRCMLAIKYLQLVEETYEPNTLGHDLIRDLISVIRARDYAEANRR 60

Query: 61 LTAYSIRRDGATDVDLKRPTVAVCACP 88
           T ++ R +G++  +L++P    C CP
Sbjct: 61 YTKFNARLEGSSKTELRQPVYQPCCCP 87

[Close]

BLAST of Lag0021768 vs. NCBI nr
Match: NP_620737.1 (V2 protein [Tomato yellow leaf curl Sardinia virus] >YP_001994907.1 precoat protein [TYLCAxV-Sic1-[IT:Sic2/2:04]] >YP_009109603.1 V2 [Tomato yellow leaf curl Axarquia virus] >P61511.1 RecName: Full=Protein V2 [Tomato yellow leaf curl Sardinia virus] >P61512.1 RecName: Full=Protein V2 [Tomato yellow leaf curl virus - [Murcia]] >ABI18355.1 V2 [Tomato yellow leaf curl Sardinia virus-Israel] >ACE82194.1 precoat protein [TYLCAxV-Sic2-[IT:Sic2/5:04]] >AFQ60608.1 precoat protein [Tomato yellow leaf curl Malaga virus] >CAA81024.1 V1 [Tomato yellow leaf curl Sardinia virus-[Spain1]] >CAA82235.1 V1 [Tomato yellow leaf curl Sardinia virus-[Sicily]] >CAB06672.1 V2 [Tomato yellow leaf curl virus])

HSP 1 Score: 108.2 bits (269), Expect = 4.1e-20
Identity = 49/87 (56.32%), Postives = 64/87 (73.56%), Query Frame = 0


Query: 1  MFDPLLNPLPDTVHGLRVMLAVKYLQLIEEKYNPNTLDFDLVRDLIAVVRCRLYNEATCR 60
          M+DPLLN  PD+VHGLR MLA+KYLQL+EE Y PNTL  DL+RDLI+V+R R Y EA  R
Sbjct: 1  MWDPLLNEFPDSVHGLRCMLAIKYLQLVEETYEPNTLGHDLIRDLISVIRARDYAEANRR 60

Query: 61 LTAYSIRRDGATDVDLKRPTVAVCACP 88
           T ++ R +G++  +L++P    C CP
Sbjct: 61 YTNFNARLEGSSKTELRQPVYQPCCCP 87

[Close]

BLAST of Lag0021768 vs. NCBI nr
Match: ALB26130.1 (pre-coat protein [Okra enation leaf curl virus])

HSP 1 Score: 107.8 bits (268), Expect = 5.4e-20
Identity = 46/87 (52.87%), Postives = 66/87 (75.86%), Query Frame = 0


Query: 1  MFDPLLNPLPDTVHGLRVMLAVKYLQLIEEKYNPNTLDFDLVRDLIAVVRCRLYNEATCR 60
          M+DPLLN  PDTVHG R MLA+KYLQ + E+Y+P+T+ +DL+RDLI+++RCR Y EA+CR
Sbjct: 1  MWDPLLNEFPDTVHGFRCMLAIKYLQQLSEEYSPDTVGYDLIRDLISILRCRNYVEASCR 60

Query: 61 LTAYSIRRDGATDVDLKRPTVAVCACP 88
             +  R +GA+  +L++P    C+CP
Sbjct: 61 YRHFHPRVEGASSTELRQPVFNPCSCP 87

[Close]

BLAST of Lag0021768 vs. NCBI nr
Match: AZB48719.2 (precoat protein [Clerodendron yellow mosaic virus])

HSP 1 Score: 107.8 bits (268), Expect = 5.4e-20
Identity = 49/91 (53.85%), Postives = 66/91 (72.53%), Query Frame = 0


Query: 1  MFDPLLNPLPDTVHGLRVMLAVKYLQLIEEKYNPNTLDFDLVRDLIAVVRCRLYNEATCR 60
          M+DP++N LP+TVHG R MLA+KYLQ +E  Y+P+TL +DLVRDLI+V+R R Y EAT R
Sbjct: 1  MWDPIVNDLPETVHGFRSMLAIKYLQAVENTYSPDTLGYDLVRDLISVLRARNYGEATSR 60

Query: 61 LTAYSIRRDGATDVDLKRPTVAVCACPRHGR 92
             ++ R +GAT  +L++P    C CP  GR
Sbjct: 61 YHHFNARIEGATTFELRKPICQPCHCPHCGR 91

[Close]

BLAST of Lag0021768 vs. NCBI nr
Match: NP_786876.1 (precoat protein V1 [Tomato yellow leaf curl Malaga virus] >AAL50344.1 precoat protein V1 [Tomato yellow leaf curl Malaga virus])

HSP 1 Score: 107.8 bits (268), Expect = 5.4e-20
Identity = 49/87 (56.32%), Postives = 64/87 (73.56%), Query Frame = 0


Query: 1  MFDPLLNPLPDTVHGLRVMLAVKYLQLIEEKYNPNTLDFDLVRDLIAVVRCRLYNEATCR 60
          M+DPLLN  PD+VHGLR MLA+KYLQL+EE Y PNTL  DL+RDLI+V+R R Y EA  R
Sbjct: 1  MWDPLLNEFPDSVHGLRCMLAIKYLQLVEETYEPNTLGHDLIRDLISVIRARDYAEANRR 60

Query: 61 LTAYSIRRDGATDVDLKRPTVAVCACP 88
           T ++ R +G++  +L++P    C CP
Sbjct: 61 YTNFNARFEGSSKTELRQPVYQPCCCP 87

[Close]

BLAST of Lag0021768 vs. ExPASy Swiss-Prot
Match: P61512 (Protein V2 OS=Tomato yellow leaf curl Sardinia virus (isolate Spain-1) OX=37139 GN=V2 PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 5.4e-23
Identity = 49/87 (56.32%), Postives = 64/87 (73.56%), Query Frame = 0


Query: 1  MFDPLLNPLPDTVHGLRVMLAVKYLQLIEEKYNPNTLDFDLVRDLIAVVRCRLYNEATCR 60
          M+DPLLN  PD+VHGLR MLA+KYLQL+EE Y PNTL  DL+RDLI+V+R R Y EA  R
Sbjct: 1  MWDPLLNEFPDSVHGLRCMLAIKYLQLVEETYEPNTLGHDLIRDLISVIRARDYAEANRR 60

Query: 61 LTAYSIRRDGATDVDLKRPTVAVCACP 88
           T ++ R +G++  +L++P    C CP
Sbjct: 61 YTNFNARLEGSSKTELRQPVYQPCCCP 87

[Close]

BLAST of Lag0021768 vs. ExPASy Swiss-Prot
Match: P61511 (Protein V2 OS=Tomato yellow leaf curl Sardinia virus OX=123735 GN=V2 PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 5.4e-23
Identity = 49/87 (56.32%), Postives = 64/87 (73.56%), Query Frame = 0


Query: 1  MFDPLLNPLPDTVHGLRVMLAVKYLQLIEEKYNPNTLDFDLVRDLIAVVRCRLYNEATCR 60
          M+DPLLN  PD+VHGLR MLA+KYLQL+EE Y PNTL  DL+RDLI+V+R R Y EA  R
Sbjct: 1  MWDPLLNEFPDSVHGLRCMLAIKYLQLVEETYEPNTLGHDLIRDLISVIRARDYAEANRR 60

Query: 61 LTAYSIRRDGATDVDLKRPTVAVCACP 88
           T ++ R +G++  +L++P    C CP
Sbjct: 61 YTNFNARLEGSSKTELRQPVYQPCCCP 87

[Close]

BLAST of Lag0021768 vs. ExPASy Swiss-Prot
Match: Q9DXE9 (Protein V2 OS=Tomato yellow leaf curl China virus OX=185793 GN=V2 PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.3e-21
Identity = 49/104 (47.12%), Postives = 68/104 (65.38%), Query Frame = 0


Query: 1   MFDPLLNPLPDTVHGLRVMLAVKYLQLIEEKYNPNTLDFDLVRDLIAVVRCRLYNEATCR 60
           M+DPLLN  P+TVHG R MLA+KYLQL+E  Y+P+TL +DL+RDLI+V+R R Y E + R
Sbjct: 1   MWDPLLNEFPETVHGFRCMLAIKYLQLVENTYSPDTLGYDLIRDLISVIRARDYGETSRR 60

Query: 61  LTAYSIRRDGATDVDLKRPTVAVCA---CPRHGRIAVEANPVLP 102
              +  R +GA+  +L++P    C    CPRH +  V     +P
Sbjct: 61  YCHFHSRLEGASPAELRQPLYGSCCCPHCPRHQKTNVVKQAHVP 104

[Close]

BLAST of Lag0021768 vs. ExPASy Swiss-Prot
Match: P27269 (Protein V2 OS=Tomato yellow leaf curl virus (strain Israel) OX=66366 GN=V2 PE=1 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.1e-20
Identity = 47/87 (54.02%), Postives = 60/87 (68.97%), Query Frame = 0


Query: 1  MFDPLLNPLPDTVHGLRVMLAVKYLQLIEEKYNPNTLDFDLVRDLIAVVRCRLYNEATCR 60
          M+DPLLN  P++VHG R MLA+KYLQ +EE Y PNTL  DL+RDLI+VVR R Y EAT R
Sbjct: 1  MWDPLLNEFPESVHGFRCMLAIKYLQSVEETYEPNTLGHDLIRDLISVVRARDYVEATRR 60

Query: 61 LTAYSIRRDGATDVDLKRPTVAVCACP 88
             +  R +G+   +L++P    C CP
Sbjct: 61 YNHFHARLEGSPKAELRQPIQQPCCCP 87

[Close]

BLAST of Lag0021768 vs. ExPASy Swiss-Prot
Match: Q67616 (Protein V2 OS=Tomato yellow leaf curl Sardinia virus (isolate Spain-2) OX=221538 GN=V2 PE=3 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.9e-20
Identity = 47/87 (54.02%), Postives = 60/87 (68.97%), Query Frame = 0


Query: 1  MFDPLLNPLPDTVHGLRVMLAVKYLQLIEEKYNPNTLDFDLVRDLIAVVRCRLYNEATCR 60
          M+DPLLN  PD+VHGLR MLA+KYLQL+EE Y PNTL  DL+RDLI+V+R R Y EA  R
Sbjct: 1  MWDPLLNEFPDSVHGLRCMLAIKYLQLVEETYEPNTLGHDLIRDLISVIRARDYAEANRR 60

Query: 61 LTAYSIRRDGATDVDLKRPTVAVCACP 88
           T      + ++  +L++P    C CP
Sbjct: 61 YTNVKPALEVSSKTELRQPVYQPCCCP 87

The following BLAST results are available for this feature:

BLAST of Lag0021768 vs. NCBI nr


Match Name	E-value	Identity	Description
ABY54997.1	3.2e-20	56.32	V2, partial [Tomato yellow leaf curl Sardinia virus]	[more]
NP_620737.1	4.1e-20	56.32	V2 protein [Tomato yellow leaf curl Sardinia virus] >YP_001994907.1 precoat prot...	[more]
ALB26130.1	5.4e-20	52.87	pre-coat protein [Okra enation leaf curl virus]	[more]
AZB48719.2	5.4e-20	53.85	precoat protein [Clerodendron yellow mosaic virus]	[more]
NP_786876.1	5.4e-20	56.32	precoat protein V1 [Tomato yellow leaf curl Malaga virus] >AAL50344.1 precoat pr...	[more]

BLAST of Lag0021768 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P61512	5.4e-23	56.32	Protein V2 OS=Tomato yellow leaf curl Sardinia virus (isolate Spain-1) OX=37139 ...	[more]
P61511	5.4e-23	56.32	Protein V2 OS=Tomato yellow leaf curl Sardinia virus OX=123735 GN=V2 PE=3 SV=1	[more]
Q9DXE9	2.3e-21	47.12	Protein V2 OS=Tomato yellow leaf curl China virus OX=185793 GN=V2 PE=3 SV=1	[more]
P27269	1.1e-20	54.02	Protein V2 OS=Tomato yellow leaf curl virus (strain Israel) OX=66366 GN=V2 PE=1 ...	[more]
Q67616	1.9e-20	54.02	Protein V2 OS=Tomato yellow leaf curl Sardinia virus (isolate Spain-2) OX=221538...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002511	Geminivirus V2 protein	PFAM	PF01524	Gemini_V2	coord: 1..77 e-value: 3.2E-30 score: 104.1

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0021768.1	Lag0021768.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019048	modulation by virus of host process
biological_process	GO:0060967	negative regulation of gene silencing by RNA
cellular_component	GO:0030430	host cell cytoplasm