Lag0021753 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0021753
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Actin-related protein 2/3 complex subunit 5
Location	chr7: 11480961 .. 11483150 (-)
RNA-Seq Expression	Lag0021753
Synteny	Lag0021753

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAAAATGGCGACTACCGATGAATTTGTGGAAGCAGATAATGCAGAAGCCATAATCACCAGAATTGAGCACAAATCTCGAAAGATCGAGAGCTTACTTAAACAGTAATGAATACTCTACCTACTCTTTGATTATAGGATTTAAATTTATTCAGCTCCATCTCCTAACTTACTAAAAATGCCCCAATCTGTCATTTTTTGCTTCGTTAAGGTCTAAACCAATCGAAGCTCTTAAAACTGCTCTTGAAGGTTCCCCTCCAAATACCCGAGATGAGCGTTGCAAGGTATCCTTTCTTTCTTTTCTTCTCTCTTTTTTACTGCCTATGATCAATTTGGTGATTTTTATTATTAGTATGATTTAATTTGTGGGTAATCCTACAGATTTTAAGGGAAATTACTGGGAAAAATCCCTGTTTTTCAGCCATCATTAATTCTAATTTTATGCTTTTCCTACATTTTCTCAATGATGAGGCCAATTAGAATTGCTGGATGTTGATATAATTGTTGGAAATAGTTTGTTGTATCTGTATGCAGCTACTCAAAATGAATAGGCTTGTTGTTTCTTTCATGTTTATGTTTTGTTGGTGTGCTTGACCTGGGAGGATGAGTAAATCTAATATGATTATTTATACTTCTCCAGTCAGCAAATTGGATTGTGGTGCATAGGGCTCTCATGGCTATAAAGGATGTAGATGGGATGTTTTCTTCCTTGGATCCGGAGTACTATGATATTCTAATGAAGTGAGTTTGTGTTATTTAACTGCTAAAATGTCAATTCTTATTGCTTCTACTTACTTCAGCAGGAGTCTAAAGTTGGTCATTCCACTAATTATATATATTTTTTCACTTTTTCCTTCAATTAAATTCAAAGTTTAGGTTCTTAGATTATGATTTTGCTATGAATTTTATATTCAAATTGTGGGTCTGATCCTAATATGAGTTATGCTAACGAACATTTTGTTTTTGTTTCAAACTCATCAAATTTCTACAGCTAGATGTGTCCATGTCGATGAGGCATGTGTTAGTCTTTAGTTACATGGAAGATTGGTTGGCTGATGAATTTATTTTTGTCGCAAGGAGTCTTTGTAAAAGTGGAAATCTTCATAACCATTTAGCTAGAAATATCTCATCACATTATTCAAAAAAAAAAAAAAAAAAAATCTCATCACATTTTCTGAAGCTAGCAAGTCACACCCAACCTTTCTCCTAATAGCCGCCCTTCCTTCTTTTTCCAAAATGTTGCTAATCTTTTCGGGATTCCAAACACCAAGAAGAGATAAGCGAGGATGCTTGACAACACTGATTAGGGAAATGTCAGTCCTCCCCTTTGGAACAACAGGACTGTTTTCACGTGGATCTAATGACAGGGTTTCGAAAGCCAGTGGCCTTTATTGGCCTCCAAGCATAGGTCGCACATGAATCATTCATGGGGAAGAAGTAGTATTTTGAGCCTATTTGCCTGTAGATCTACTACTTCTCAGTTTATGTTGATCCCTCCCAATTCATTCTTTTCCCAAATGATTATTAGACCTGAGGTTTACTTTTCTTTTCTTTATTTTTTTTTGTAAAAGATAAGACTTTTTTTTTTTGATAAATAAGAAACAAAATTTGTTGATGTATGAAATTACAAAAAGTAGGGAGAGCAGAAAGGAAGTTACAAGAAAATCTGCAAGTAGTAAAAATCACTCTCTCAATGAAGAATCAAAAGGGAGGTTTTCTCTTCTAAGTATACGTTTGTTCCTCTTGAGTCTTAAGTACTACAAAAGAAAAAAAAAAAAACAATTCATGAGATCTCATAACACTTGCTTTTGGTCTTTTTAAAAAGGATTCACCAAGAGAGAAATTTAGAAACCTCCCTTAATATTTTGAAGGAATAGTTAGAAACCAGCCAAGAGAACTAAACGAGAAAGCCTGCATTTTAAGCATGGTTGCAATGAGGAATAAGACTATCTTTGTTTTCTTCTTACAATATGCACTTGGCGTACCAACTTGGTGAAGGGGAGGATTAGGGTTTCAAGCTTGGACTTTTATCTTGGGTACTAATACCACCATGGAGAAGCTCTCACATGATCCAGGAGAGTGGGGAAACTTTGTGGGAGTCATTGAGACATTTCATAGTGAAAGTTCTGGACCTATCGTTGCACTAAGACCAGAAACCATCCCCATTTTCCGAAGAGAAACCATTTAG

mRNA sequence

ATGGCGAAAATGGCGACTACCGATGAATTTGTGGAAGCAGATAATGCAGAAGCCATAATCACCAGAATTGAGCACAAATCTCGAAAGATCGAGAGCTTACTTAAACAGTCTAAACCAATCGAAGCTCTTAAAACTGCTCTTGAAGGTTCCCCTCCAAATACCCGAGATGAGCGTTGCAAGTCAGCAAATTGGATTGTGGTGCATAGGGCTCTCATGGCTATAAAGGATGTAGATGGGATGTTTTCTTCCTTGGATCCGGAGTACTATGATATTCTAATGAAGGGAGGATTAGGGTTTCAAGCTTGGACTTTTATCTTGGGTACTAATACCACCATGGAGAAGCTCTCACATGATCCAGGAGAGTGGGGAAACTTTGTGGGAGTCATTGAGACATTTCATAGTGAAAGTTCTGGACCTATCGTTGCACTAAGACCAGAAACCATCCCCATTTTCCGAAGAGAAACCATTTAG

Coding sequence (CDS)

ATGGCGAAAATGGCGACTACCGATGAATTTGTGGAAGCAGATAATGCAGAAGCCATAATCACCAGAATTGAGCACAAATCTCGAAAGATCGAGAGCTTACTTAAACAGTCTAAACCAATCGAAGCTCTTAAAACTGCTCTTGAAGGTTCCCCTCCAAATACCCGAGATGAGCGTTGCAAGTCAGCAAATTGGATTGTGGTGCATAGGGCTCTCATGGCTATAAAGGATGTAGATGGGATGTTTTCTTCCTTGGATCCGGAGTACTATGATATTCTAATGAAGGGAGGATTAGGGTTTCAAGCTTGGACTTTTATCTTGGGTACTAATACCACCATGGAGAAGCTCTCACATGATCCAGGAGAGTGGGGAAACTTTGTGGGAGTCATTGAGACATTTCATAGTGAAAGTTCTGGACCTATCGTTGCACTAAGACCAGAAACCATCCCCATTTTCCGAAGAGAAACCATTTAG

Protein sequence

MAKMATTDEFVEADNAEAIITRIEHKSRKIESLLKQSKPIEALKTALEGSPPNTRDERCKSANWIVVHRALMAIKDVDGMFSSLDPEYYDILMKGGLGFQAWTFILGTNTTMEKLSHDPGEWGNFVGVIETFHSESSGPIVALRPETIPIFRRETI

Homology

[Close]

BLAST of Lag0021753 vs. NCBI nr
Match: XP_008441367.1 (PREDICTED: actin-related protein 2/3 complex subunit 5A [Cucumis melo])

HSP 1 Score: 178.3 bits (451), Expect = 5.0e-41
Identity = 89/91 (97.80%), Postives = 90/91 (98.90%), Query Frame = 0


Query: 4  MATTDEFVEADNAEAIITRIEHKSRKIESLLKQSKPIEALKTALEGSPPNTRDERCKSAN 63
          MATT EFVEADNAEAIITRIEHKSRKIESLLKQSKP+EALKTALEGSPPNTRDERCKSAN
Sbjct: 1  MATTCEFVEADNAEAIITRIEHKSRKIESLLKQSKPVEALKTALEGSPPNTRDERCKSAN 60

Query: 64 WIVVHRALMAIKDVDGMFSSLDPEYYDILMK 95
          WIVVHRALMAIKDVDGMFSSLDPEYYDILMK
Sbjct: 61 WIVVHRALMAIKDVDGMFSSLDPEYYDILMK 91

[Close]

BLAST of Lag0021753 vs. NCBI nr
Match: KAA0056599.1 (actin-related protein 2/3 complex subunit 5A [Cucumis melo var. makuwa] >TYK24282.1 actin-related protein 2/3 complex subunit 5A [Cucumis melo var. makuwa])

HSP 1 Score: 178.3 bits (451), Expect = 5.0e-41
Identity = 89/91 (97.80%), Postives = 90/91 (98.90%), Query Frame = 0


Query: 4  MATTDEFVEADNAEAIITRIEHKSRKIESLLKQSKPIEALKTALEGSPPNTRDERCKSAN 63
          MATT EFVEADNAEAIITRIEHKSRKIESLLKQSKP+EALKTALEGSPPNTRDERCKSAN
Sbjct: 1  MATTCEFVEADNAEAIITRIEHKSRKIESLLKQSKPVEALKTALEGSPPNTRDERCKSAN 60

Query: 64 WIVVHRALMAIKDVDGMFSSLDPEYYDILMK 95
          WIVVHRALMAIKDVDGMFSSLDPEYYDILMK
Sbjct: 61 WIVVHRALMAIKDVDGMFSSLDPEYYDILMK 91

[Close]

BLAST of Lag0021753 vs. NCBI nr
Match: XP_038884940.1 (actin-related protein 2/3 complex subunit 5A [Benincasa hispida] >XP_038884941.1 actin-related protein 2/3 complex subunit 5A [Benincasa hispida] >XP_038884942.1 actin-related protein 2/3 complex subunit 5A [Benincasa hispida] >XP_038884943.1 actin-related protein 2/3 complex subunit 5A [Benincasa hispida])

HSP 1 Score: 177.9 bits (450), Expect = 6.6e-41
Identity = 88/91 (96.70%), Postives = 90/91 (98.90%), Query Frame = 0


Query: 4  MATTDEFVEADNAEAIITRIEHKSRKIESLLKQSKPIEALKTALEGSPPNTRDERCKSAN 63
          MATT EFVEADNAEAIITRIEHKSRKIESLLKQS+P+EALKTALEGSPPNTRDERCKSAN
Sbjct: 1  MATTGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSAN 60

Query: 64 WIVVHRALMAIKDVDGMFSSLDPEYYDILMK 95
          WIVVHRALMAIKDVDGMFSSLDPEYYDILMK
Sbjct: 61 WIVVHRALMAIKDVDGMFSSLDPEYYDILMK 91

[Close]

BLAST of Lag0021753 vs. NCBI nr
Match: XP_010089302.1 (actin-related protein 2/3 complex subunit 5A [Morus notabilis] >EXB37627.1 Actin-related protein 2/3 complex subunit 5 [Morus notabilis])

HSP 1 Score: 176.8 bits (447), Expect = 1.5e-40
Identity = 88/91 (96.70%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 4  MATTDEFVEADNAEAIITRIEHKSRKIESLLKQSKPIEALKTALEGSPPNTRDERCKSAN 63
          MA TD FVEADNAEAIITRIEHKSRKIESLLKQSKP+EALKTALEGSPPNTRDERCKSAN
Sbjct: 1  MAGTDAFVEADNAEAIITRIEHKSRKIESLLKQSKPVEALKTALEGSPPNTRDERCKSAN 60

Query: 64 WIVVHRALMAIKDVDGMFSSLDPEYYDILMK 95
          WIVVHRALMAIKDVDGMFSSLDPEYYDILMK
Sbjct: 61 WIVVHRALMAIKDVDGMFSSLDPEYYDILMK 91

[Close]

BLAST of Lag0021753 vs. NCBI nr
Match: XP_038683274.1 (actin-related protein 2/3 complex subunit 5A [Tripterygium wilfordii] >XP_038683818.1 actin-related protein 2/3 complex subunit 5A [Tripterygium wilfordii] >KAF5731616.1 actin-related protein 2/3 complex subunit 5A [Tripterygium wilfordii])

HSP 1 Score: 174.9 bits (442), Expect = 5.6e-40
Identity = 85/91 (93.41%), Postives = 90/91 (98.90%), Query Frame = 0


Query: 4  MATTDEFVEADNAEAIITRIEHKSRKIESLLKQSKPIEALKTALEGSPPNTRDERCKSAN 63
          MATT+EFVEADNAEAIITRIEHKSRKIESLLKQSKP+EALKTALEGSPPNTRDERCKSAN
Sbjct: 1  MATTEEFVEADNAEAIITRIEHKSRKIESLLKQSKPVEALKTALEGSPPNTRDERCKSAN 60

Query: 64 WIVVHRALMAIKDVDGMFSSLDPEYYDILMK 95
          WIVVHRA+MAIKDVD +FS+LDPEYYDILMK
Sbjct: 61 WIVVHRAIMAIKDVDALFSALDPEYYDILMK 91

[Close]

BLAST of Lag0021753 vs. ExPASy Swiss-Prot
Match: Q9M117 (Actin-related protein 2/3 complex subunit 5A OS=Arabidopsis thaliana OX=3702 GN=ARPC5A PE=1 SV=2)

HSP 1 Score: 150.2 bits (378), Expect = 1.9e-35
Identity = 75/86 (87.21%), Postives = 79/86 (91.86%), Query Frame = 0


Query: 9  EFVEADNAEAIITRIEHKSRKIESLLKQSKPIEALKTALEGSPPNTRDERCKSANWIVVH 68
          EFVEADNAEAII RIE KSRKIESLLKQ K +EALKTALEGSPP TRDERCKSANWIVVH
Sbjct: 3  EFVEADNAEAIIARIETKSRKIESLLKQYKHVEALKTALEGSPPKTRDERCKSANWIVVH 62

Query: 69 RALMAIKDVDGMFSSLDPEYYDILMK 95
          RALMAIKD+DGM ++LD EYYDILMK
Sbjct: 63 RALMAIKDIDGMLNALDVEYYDILMK 88

[Close]

BLAST of Lag0021753 vs. ExPASy Swiss-Prot
Match: B3H6Y2 (Actin-related protein 2/3 complex subunit 5B OS=Arabidopsis thaliana OX=3702 GN=ARPC5B PE=3 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 4.9e-31
Identity = 68/91 (74.73%), Postives = 76/91 (83.52%), Query Frame = 0


Query: 4  MATTDEFVEADNAEAIITRIEHKSRKIESLLKQSKPIEALKTALEGSPPNTRDERCKSAN 63
          MA    FVEADNAE I+ RIE KS+KIESLLK  K +EALKTAL+GSPP T DERCKSAN
Sbjct: 1  MAGAAAFVEADNAEEIMARIETKSQKIESLLKHYKHVEALKTALDGSPPKTLDERCKSAN 60

Query: 64 WIVVHRALMAIKDVDGMFSSLDPEYYDILMK 95
          WIVVHRA+MAIKD++GM +SL  EYYDILMK
Sbjct: 61 WIVVHRAIMAIKDIEGMLNSLTAEYYDILMK 91

The following BLAST results are available for this feature:

BLAST of Lag0021753 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008441367.1	5.0e-41	97.80	PREDICTED: actin-related protein 2/3 complex subunit 5A [Cucumis melo]	[more]
KAA0056599.1	5.0e-41	97.80	actin-related protein 2/3 complex subunit 5A [Cucumis melo var. makuwa] >TYK2428...	[more]
XP_038884940.1	6.6e-41	96.70	actin-related protein 2/3 complex subunit 5A [Benincasa hispida] >XP_038884941.1...	[more]
XP_010089302.1	1.5e-40	96.70	actin-related protein 2/3 complex subunit 5A [Morus notabilis] >EXB37627.1 Actin...	[more]
XP_038683274.1	5.6e-40	93.41	actin-related protein 2/3 complex subunit 5A [Tripterygium wilfordii] >XP_038683...	[more]

BLAST of Lag0021753 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M117	1.9e-35	87.21	Actin-related protein 2/3 complex subunit 5A OS=Arabidopsis thaliana OX=3702 GN=...	[more]
B3H6Y2	4.9e-31	74.73	Actin-related protein 2/3 complex subunit 5B OS=Arabidopsis thaliana OX=3702 GN=...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006789	Actin-related protein 2/3 complex subunit 5	PFAM	PF04699	P16-Arc	coord: 8..94 e-value: 3.3E-8 score: 34.1
IPR006789	Actin-related protein 2/3 complex subunit 5	PANTHER	PTHR12644	ARP2/3 COMPLEX 16 KD SUBUNIT P16-ARC	coord: 6..94
IPR036743	Actin-related protein 2/3 complex subunit 5 superfamily	GENE3D	1.25.40.190		coord: 4..95 e-value: 1.0E-12 score: 50.4
IPR036743	Actin-related protein 2/3 complex subunit 5 superfamily	SUPERFAMILY	69103	Arp2/3 complex 16 kDa subunit ARPC5	coord: 7..94
None	No IPR available	PANTHER	PTHR12644:SF0	ACTIN-RELATED PROTEIN 2/3 COMPLEX SUBUNIT 5	coord: 6..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0021753.1	Lag0021753.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034314	Arp2/3 complex-mediated actin nucleation
biological_process	GO:0030833	regulation of actin filament polymerization
cellular_component	GO:0005885	Arp2/3 protein complex
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0015629	actin cytoskeleton
molecular_function	GO:0051015	actin filament binding