Lag0021743 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0021743
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr7: 11350449 .. 11351240 (-)
RNA-Seq ExpressionLag0021743
SyntenyLag0021743
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCAAAGGTAAGGGAATCTCCGTACAACTTCTGGTGAAGATACCGATGAAACGACCGACCGAATCGCCGCTTTCTTCCTTTCTCACCTTTCAACCTTCACACGTGGAATTTCTCACCCCAATCACACTCTTCTACCGAAAATACCCTTGCCTTTTCCTTTTAATTACGGCAGTGGCACCACCTCAATGGAGTCAACAATGGCTCAACCCATCTGGGTAAATTCGAAAATAGCGAGAACTTGAAGGGGTACTGTGGACACTTTGGCGTATTTGGAGTGCAGGTCTGAATCGAAGCTTCTCTCTCTGTTCAGCTCTGAAAGTTTCTTTCTTGACGTTGTATTCTCTTTTGACTTTGATTGGAAACCGATTTCATTTTCTGTGAAATTGCAGAGTTTCTTCATGCCTATTCACATCTCTGACTATAACACGTTTCTGGGTCCTCGATCGCCTCATAATTTCCCTCGATTTTTCCTTCGCCATTGCAATTAGCTCCGTGGGTGAGTAGCTTTCTTTCCTTTAGTGGGGGGTTTTTGTTTCTGTATCTGATTCGCTGGATTGTGTTCTTAACGTATTTCGAGATTTGGGTTTGATTGTTTTTTTGTTCTTCTGATATTGGAGAGCTGTAATTTTGTTTTCTGGGTCCCGGTTTCTTGGAATTTTGGTTGAGTAATCGTGCTGTTTAGATCAATTTTCTTGGCTCTTAATTGTTGCCATGTTTGATTGTTCTTCAACAGCTGAGCTTTCAGGGTGGATATTCGTGATACTGAGATTGAATTTCTTGTTTGATTAG

mRNA sequence

ATGATCAAAGGTAAGGGAATCTCCGTACAACTTCTGGTGAAGATACCGATGAAACGACCGACCGAATCGCCGCTTTCTTCCTTTCTCACCTTTCAACCTTCACACGTGGAATTTCTCACCCCAATCACACTCTTCTACCGAAAATACCCTTGCCTTTTCCTTTTAATTACGGCAGTGGCACCACCTCAATGGAGTCAACAATGGCTCAACCCATCTGGAGTTTCTTCATGCCTATTCACATCTCTGACTATAACACGTTTCTGGGTCCTCGATCGCCTCATAATTTCCCTCGATTTTTCCTTCGCCATTGCAATTAGCTCCGTGGCTGAGCTTTCAGGGTGGATATTCGTGATACTGAGATTGAATTTCTTGTTTGATTAG

Coding sequence (CDS)

ATGATCAAAGGTAAGGGAATCTCCGTACAACTTCTGGTGAAGATACCGATGAAACGACCGACCGAATCGCCGCTTTCTTCCTTTCTCACCTTTCAACCTTCACACGTGGAATTTCTCACCCCAATCACACTCTTCTACCGAAAATACCCTTGCCTTTTCCTTTTAATTACGGCAGTGGCACCACCTCAATGGAGTCAACAATGGCTCAACCCATCTGGAGTTTCTTCATGCCTATTCACATCTCTGACTATAACACGTTTCTGGGTCCTCGATCGCCTCATAATTTCCCTCGATTTTTCCTTCGCCATTGCAATTAGCTCCGTGGCTGAGCTTTCAGGGTGGATATTCGTGATACTGAGATTGAATTTCTTGTTTGATTAG

Protein sequence

MIKGKGISVQLLVKIPMKRPTESPLSSFLTFQPSHVEFLTPITLFYRKYPCLFLLITAVAPPQWSQQWLNPSGVSSCLFTSLTITRFWVLDRLIISLDFSFAIAISSVAELSGWIFVILRLNFLFD
Homology
[Close]
BLAST of Lag0021743 vs. NCBI nr
Match: KAG7029090.1 (hypothetical protein SDJN02_10274, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 59.3 bits (142), Expect = 2.7e-05
Identity = 32/41 (78.05%), Postives = 33/41 (80.49%), Query Frame = 0 

Query: 74  VSSCLFTSLTITRFWVLDRLIISLDFSFAIAISSVAELSGW 115
           VSSC FTSLTITRFWVLDRLII LDF FAIAI    +L GW
Sbjct: 30  VSSCQFTSLTITRFWVLDRLIIPLDFPFAIAI----KLRGW 66

[Close]
BLAST of Lag0021743 vs. NCBI nr
Match: KAG6597651.1 (hypothetical protein SDJN03_10831, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 56.2 bits (134), Expect = 2.3e-04
Identity = 29/32 (90.62%), Postives = 29/32 (90.62%), Query Frame = 0 

Query: 74  VSSCLFTSLTITRFWVLDRLIISLDFSFAIAI 106
           VSSC FTSLTITRFWVLDRLII LDF FAIAI
Sbjct: 787 VSSCQFTSLTITRFWVLDRLIIPLDFPFAIAI 818

The following BLAST results are available for this feature:
BLAST of Lag0021743 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7029090.12.7e-0578.05hypothetical protein SDJN02_10274, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6597651.12.3e-0490.63hypothetical protein SDJN03_10831, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Lag0021743 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0021743.1Lag0021743.1mRNA