Lag0021730 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0021730
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Eukaryotic translation initiation factor 4C
Location	chr7: 11250521 .. 11250958 (-)
RNA-Seq Expression	Lag0021730
Synteny	Lag0021730

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAAAGAACAAGGGAAAGGGAGGAAAGAACAGGAAGAGAGGAAAGAACGAAGCAGATGATGAGAAGCGTGAGCTTGTTTTCAAGGAAGATGGTCAGGAGTATGCCCAGGTTCTCAGAATGTTAGGGAATGGTCGGTGTGAGGCGATGTGCATAGATGGGACAAAGCGTCTTTGCCATATCCGGGGGAAGATGCACAAAAAGGTTTGGATCGCAGCTGGCGATATAATACTTGTGGGTCTTCGCGACTATCAGGATGACAAAGCTGATGTTATCCTCAAGTATATGCCTGATGAAGCAAGGCTGTTGAAGGCATATGGTGAGCTACCTGAGAGCACACGTCTCAACGAGGGTATTGCTGGTGGTATCGATGATGAGGATGATGGTGGCGGTGATGACTATCTCGAGTTCGAGGATGAAGATATCGATAAGATTTAG

mRNA sequence

ATGCCAAAGAACAAGGGAAAGGGAGGAAAGAACAGGAAGAGAGGAAAGAACGAAGCAGATGATGAGAAGCGTGAGCTTGTTTTCAAGGAAGATGGTCAGGAGTATGCCCAGGTTCTCAGAATGTTAGGGAATGGTCGGTGTGAGGCGATGTGCATAGATGGGACAAAGCGTCTTTGCCATATCCGGGGGAAGATGCACAAAAAGGTTTGGATCGCAGCTGGCGATATAATACTTGTGGGTCTTCGCGACTATCAGGATGACAAAGCTGATGTTATCCTCAAGTATATGCCTGATGAAGCAAGGCTGTTGAAGGCATATGGTGAGCTACCTGAGAGCACACGTCTCAACGAGGGTATTGCTGGTGGTATCGATGATGAGGATGATGGTGGCGGTGATGACTATCTCGAGTTCGAGGATGAAGATATCGATAAGATTTAG

Coding sequence (CDS)

ATGCCAAAGAACAAGGGAAAGGGAGGAAAGAACAGGAAGAGAGGAAAGAACGAAGCAGATGATGAGAAGCGTGAGCTTGTTTTCAAGGAAGATGGTCAGGAGTATGCCCAGGTTCTCAGAATGTTAGGGAATGGTCGGTGTGAGGCGATGTGCATAGATGGGACAAAGCGTCTTTGCCATATCCGGGGGAAGATGCACAAAAAGGTTTGGATCGCAGCTGGCGATATAATACTTGTGGGTCTTCGCGACTATCAGGATGACAAAGCTGATGTTATCCTCAAGTATATGCCTGATGAAGCAAGGCTGTTGAAGGCATATGGTGAGCTACCTGAGAGCACACGTCTCAACGAGGGTATTGCTGGTGGTATCGATGATGAGGATGATGGTGGCGGTGATGACTATCTCGAGTTCGAGGATGAAGATATCGATAAGATTTAG

Protein sequence

MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIAGGIDDEDDGGGDDYLEFEDEDIDKI

Homology

[Close]

BLAST of Lag0021730 vs. NCBI nr
Match: XP_008457652.1 (PREDICTED: eukaryotic translation initiation factor 1A [Cucumis melo] >XP_008457653.1 PREDICTED: eukaryotic translation initiation factor 1A [Cucumis melo] >KAA0045698.1 eukaryotic translation initiation factor 1A [Cucumis melo var. makuwa])

HSP 1 Score: 291.2 bits (744), Expect = 4.9e-75
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120

Query: 121 GGIDDEDDGGGDDYLEFEDEDIDKI 146
           GGIDDEDDGGGDDYLEFEDEDIDKI
Sbjct: 121 GGIDDEDDGGGDDYLEFEDEDIDKI 145

[Close]

BLAST of Lag0021730 vs. NCBI nr
Match: XP_022140781.1 (eukaryotic translation initiation factor 1A-like [Momordica charantia])

HSP 1 Score: 288.9 bits (738), Expect = 2.5e-74
Identity = 144/145 (99.31%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120

Query: 121 GGIDDEDDGGGDDYLEFEDEDIDKI 146
           GGIDDEDD GGDDYLEFEDEDIDKI
Sbjct: 121 GGIDDEDDAGGDDYLEFEDEDIDKI 145

[Close]

BLAST of Lag0021730 vs. NCBI nr
Match: XP_022145199.1 (eukaryotic translation initiation factor 1A [Momordica charantia] >XP_022956094.1 eukaryotic translation initiation factor 1A [Cucurbita moschata] >XP_022956095.1 eukaryotic translation initiation factor 1A [Cucurbita moschata] >XP_022979975.1 eukaryotic translation initiation factor 1A [Cucurbita maxima] >XP_022979976.1 eukaryotic translation initiation factor 1A [Cucurbita maxima] >XP_023527417.1 eukaryotic translation initiation factor 1A [Cucurbita pepo subsp. pepo] >XP_023527418.1 eukaryotic translation initiation factor 1A [Cucurbita pepo subsp. pepo] >XP_038902096.1 eukaryotic translation initiation factor 1A [Benincasa hispida] >XP_038902102.1 eukaryotic translation initiation factor 1A [Benincasa hispida])

HSP 1 Score: 288.9 bits (738), Expect = 2.5e-74
Identity = 144/145 (99.31%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120

Query: 121 GGIDDEDDGGGDDYLEFEDEDIDKI 146
           GGIDDEDDGG DDYLEFEDEDIDKI
Sbjct: 121 GGIDDEDDGGADDYLEFEDEDIDKI 145

[Close]

BLAST of Lag0021730 vs. NCBI nr
Match: XP_004147021.1 (eukaryotic translation initiation factor 1A [Cucumis sativus] >XP_011649283.1 eukaryotic translation initiation factor 1A [Cucumis sativus] >KGN61900.1 hypothetical protein Csa_006324 [Cucumis sativus])

HSP 1 Score: 286.2 bits (731), Expect = 1.6e-73
Identity = 142/145 (97.93%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120

Query: 121 GGIDDEDDGGGDDYLEFEDEDIDKI 146
           GGIDDEDDG GD+Y+EFEDEDIDKI
Sbjct: 121 GGIDDEDDGAGDNYIEFEDEDIDKI 145

[Close]

BLAST of Lag0021730 vs. NCBI nr
Match: CAA2961420.1 (eukaryotic translation initiation factor 1A [Olea europaea subsp. europaea])

HSP 1 Score: 285.8 bits (730), Expect = 2.1e-73
Identity = 141/145 (97.24%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEA CIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120

Query: 121 GGIDDEDDGGGDDYLEFEDEDIDKI 146
           GG+D+EDDGGGDDY+EFEDEDIDKI
Sbjct: 121 GGLDEEDDGGGDDYIEFEDEDIDKI 145

[Close]

BLAST of Lag0021730 vs. ExPASy Swiss-Prot
Match: P56331 (Eukaryotic translation initiation factor 1A OS=Onobrychis viciifolia OX=3882 PE=2 SV=2)

HSP 1 Score: 259.6 bits (662), Expect = 2.1e-68
Identity = 133/146 (91.10%), Postives = 140/146 (95.89%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADD+KRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDDKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGI- 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILK MPDEARLLKAYGELP++TRLNEGI 
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKLMPDEARLLKAYGELPDNTRLNEGIG 120

Query: 121 AGGIDDEDDGGGDDYLEFEDEDIDKI 146
           AGG+D+E D   +DY+EFEDEDIDKI
Sbjct: 121 AGGLDEEMD-TANDYIEFEDEDIDKI 145

[Close]

BLAST of Lag0021730 vs. ExPASy Swiss-Prot
Match: P47815 (Eukaryotic translation initiation factor 1A OS=Triticum aestivum OX=4565 PE=1 SV=2)

HSP 1 Score: 248.1 bits (632), Expect = 6.3e-65
Identity = 124/146 (84.93%), Postives = 136/146 (93.15%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADD+KRELVFKEDGQEYAQV RMLGNGRCEA+C+DGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDDKRELVFKEDGQEYAQVTRMLGNGRCEAICVDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120
           IRGKMHKKVWIAAGDI+LVGLRDYQDDKADVILKYM DEARLLKAYGELP++ RLNEG+ 
Sbjct: 61  IRGKMHKKVWIAAGDIVLVGLRDYQDDKADVILKYMNDEARLLKAYGELPDTVRLNEGV- 120

Query: 121 GGIDDEDDGGGD-DYLEFEDEDIDKI 146
             +D  ++G GD DY++FEDEDIDKI
Sbjct: 121 -DVDGPEEGEGDSDYIQFEDEDIDKI 144

[Close]

BLAST of Lag0021730 vs. ExPASy Swiss-Prot
Match: P47813 (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Homo sapiens OX=9606 GN=EIF1AX PE=1 SV=2)

HSP 1 Score: 201.1 bits (510), Expect = 8.8e-51
Identity = 106/145 (73.10%), Postives = 118/145 (81.38%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNR+RGKNE + EKRELVFKEDGQEYAQV++MLGNGR EAMC DG KRLCH
Sbjct: 1   MPKNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120
           IRGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEAR LKAYGELPE  ++NE   
Sbjct: 61  IRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDT 120

Query: 121 GGIDDEDDGGGDDYLEFEDEDIDKI 146
            G  D+D+   DD +  +DEDID I
Sbjct: 121 FGPGDDDEIQFDD-IGDDDEDIDDI 144

[Close]

BLAST of Lag0021730 vs. ExPASy Swiss-Prot
Match: Q8BMJ3 (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Mus musculus OX=10090 GN=Eif1ax PE=2 SV=3)

HSP 1 Score: 201.1 bits (510), Expect = 8.8e-51
Identity = 106/145 (73.10%), Postives = 118/145 (81.38%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNR+RGKNE + EKRELVFKEDGQEYAQV++MLGNGR EAMC DG KRLCH
Sbjct: 1   MPKNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120
           IRGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEAR LKAYGELPE  ++NE   
Sbjct: 61  IRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDT 120

Query: 121 GGIDDEDDGGGDDYLEFEDEDIDKI 146
            G  D+D+   DD +  +DEDID I
Sbjct: 121 FGPGDDDEIQFDD-IGDDDEDIDDI 144

[Close]

BLAST of Lag0021730 vs. ExPASy Swiss-Prot
Match: Q5RA42 (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Pongo abelii OX=9601 GN=EIF1AX PE=2 SV=3)

HSP 1 Score: 201.1 bits (510), Expect = 8.8e-51
Identity = 106/145 (73.10%), Postives = 118/145 (81.38%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNR+RGKNE + EKRELVFKEDGQEYAQV++MLGNGR EAMC DG KRLCH
Sbjct: 1   MPKNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120
           IRGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEAR LKAYGELPE  ++NE   
Sbjct: 61  IRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDT 120

Query: 121 GGIDDEDDGGGDDYLEFEDEDIDKI 146
            G  D+D+   DD +  +DEDID I
Sbjct: 121 FGPGDDDEIQFDD-IGDDDEDIDDI 144

The following BLAST results are available for this feature:

BLAST of Lag0021730 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008457652.1	4.9e-75	100.00	PREDICTED: eukaryotic translation initiation factor 1A [Cucumis melo] >XP_008457...	[more]
XP_022140781.1	2.5e-74	99.31	eukaryotic translation initiation factor 1A-like [Momordica charantia]	[more]
XP_022145199.1	2.5e-74	99.31	eukaryotic translation initiation factor 1A [Momordica charantia] >XP_022956094....	[more]
XP_004147021.1	1.6e-73	97.93	eukaryotic translation initiation factor 1A [Cucumis sativus] >XP_011649283.1 eu...	[more]
CAA2961420.1	2.1e-73	97.24	eukaryotic translation initiation factor 1A [Olea europaea subsp. europaea]	[more]

BLAST of Lag0021730 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P56331	2.1e-68	91.10	Eukaryotic translation initiation factor 1A OS=Onobrychis viciifolia OX=3882 PE=...	[more]
P47815	6.3e-65	84.93	Eukaryotic translation initiation factor 1A OS=Triticum aestivum OX=4565 PE=1 SV...	[more]
P47813	8.8e-51	73.10	Eukaryotic translation initiation factor 1A, X-chromosomal OS=Homo sapiens OX=96...	[more]
Q8BMJ3	8.8e-51	73.10	Eukaryotic translation initiation factor 1A, X-chromosomal OS=Mus musculus OX=10...	[more]
Q5RA42	8.8e-51	73.10	Eukaryotic translation initiation factor 1A, X-chromosomal OS=Pongo abelii OX=96...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001253	Translation initiation factor 1A (eIF-1A)	SMART	SM00652	eIF1neu4	coord: 28..110 e-value: 7.0E-49 score: 178.4
IPR001253	Translation initiation factor 1A (eIF-1A)	TIGRFAM	TIGR00523	TIGR00523	coord: 14..110 e-value: 8.1E-35 score: 116.8
IPR001253	Translation initiation factor 1A (eIF-1A)	PANTHER	PTHR21668	EIF-1A	coord: 1..145
IPR001253	Translation initiation factor 1A (eIF-1A)	HAMAP	MF_00216	aIF_1A	coord: 16..110 score: 18.345238
IPR001253	Translation initiation factor 1A (eIF-1A)	CDD	cd05793	S1_IF1A	coord: 33..109 e-value: 6.52876E-42 score: 132.262
IPR006196	RNA-binding domain, S1, IF1 type	PFAM	PF01176	eIF-1a	coord: 32..93 e-value: 4.8E-22 score: 77.6
IPR006196	RNA-binding domain, S1, IF1 type	PROSITE	PS50832	S1_IF1_TYPE	coord: 22..96 score: 31.623802
None	No IPR available	GENE3D	2.40.50.140		coord: 2..145 e-value: 1.0E-57 score: 195.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 122..145
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 116..145
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	PANTHER	PTHR21668:SF18	EUKARYOTIC TRANSLATION INITIATION FACTOR 1A-LIKE	coord: 1..145
IPR018104	Translation initiation factor 1A (eIF-1A), conserved site	PROSITE	PS01262	IF1A	coord: 41..63
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 2..144

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0021730.1	Lag0021730.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006413	translational initiation
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0003723	RNA binding