Lag0021725 (gene) Sponge gourd (AG‐4) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAGGGGAAAGCCCGACCTCGAGATCGACGGTCTTCATTCCGTTCCATTTTAGATCTGAGAGATGCGAGCCATTTGTTCTGTTTCATTCCAGATTTAACGAGATGCAAACCCTTTGTTCCATCCCAATTCCGACGAAACCGACCTAAAAAACGAGGACCTCAAGATCTGCCCGAACTCATTGACCTTCGTCACTCTCCACCGAGTCGTCTCGCCATCTCACGTGATGGAAAGATCACCCTCAAGTCCAACAGACAATGCCCAAATGAAGGAAGGAGGTACCGATTCAAAGAGGGTTTTCCCCTTCGTTTTTTTAAAAAAGAAACAGGGGTTGAGATTTCTTCGCGAACGCCCGTGTTGTATGGGTCTCTTCATGCGAAGCTTCGTGCCATTGTTCCGCGTGGGTTGCCGCTGAGTGGGTGTCCCTAATTGCACCATTTTTCCAGATTCGTTAGTACAACCAAGTAAAAAGATCCATTCCTTAAAGAAAAAGAAAAGGAGAAAAAAAGGGAAAATAAAAATAATAAAAAATATATATTTTTTAAATAAAAATGTATATGTCACGTCATCTATATGTTAGTATTAACAAAAAAATTTAACGGAGGGACAAAGAGTGTAACGAAATCCAACCCTCAGGAATAAAAATCCAAACCTCAAGGAAATCATCAGCTTTCATTCCAGGCAGGCTTATCACAAACAATGTGGTCATGAGTTTCGAGTGCATCCACACCATCAACACTAAGAGATCAGGAAAAGAGGGATTCATTGTTATGAAGCTCGACATGAACAAAGCCTACGACAGAGTAGAATGGTACTACCTAGACAAGGTGATGGACATAATGGGCTTCAGTGGAATGTGGAGGAATAAGGTCATGAGATGCATCTTTTCAGCATTTTTCTCAATATTAGTCAATGACAATCTGAGCGAGGAGTTTAAACCAAGTAGGGGGATCAGGCAAGGGGATCTGTTGTCCCCATACCTGTTCCTCCTATGTGCTGAAGGCTTCTCGACCCTTCAAAACAGGGAAGAATCCATTTCTAACCTTTATGGCTTTAGAATCAACAAACATTGCCCCTCTATATCTCACCTATTTTTTGCTGATGATAGTCTCATTTTTTGCAGGGCCAATGAGAAGGATTGTAGGATTATCAAGAAGGTGATCAATTTATATGGCAAAGCATCAGGCTAA ATGAAGGGGAAAGCCCGACCTCGAGATCGACGGTCTTCATTCCGTTCCATTTTAGATCTGAGAGATGCGAGCCATTTGTTCTGTTTCATTCCAGATTTAACGAGATGCAAACCCTTTGTTCCATCCCAATTCCGACGAAACCGACCTAAAAAACGAGGACCTCAAGATCTGCCCGAACTCATTGACCTTCGTCACTCTCCACCGAGTCGTCTCGCCATCTCACGTGATGGAAAGATCACCCTCAAGTCCAACAGACAATGCCCAAATGAAGGAAGGAGGCTTATCACAAACAATGTGGTCATGAGTTTCGAGTGCATCCACACCATCAACACTAAGAGATCAGGAAAAGAGGGATTCATTGTTATGAAGCTCGACATGAACAAAGCCTACGACAGAGTAGAATGGTACTACCTAGACAAGGTGATGGACATAATGGGCTTCAGTGGAATGTGGAGGAATAAGGTCATGAGATGCATCTTTTCAGCATTTTTCTCAATATTAGTCAATGACAATCTGAGCGAGGAGTTTAAACCAAGTAGGGGGATCAGGCAAGGGGATCTGTTGTCCCCATACCTGTTCCTCCTATGTGCTGAAGGCTTCTCGACCCTTCAAAACAGGGAAGAATCCATTTCTAACCTTTATGGCTTTAGAATCAACAAACATTGCCCCTCTATATCTCACCTATTTTTTGCTGATGATAGTCTCATTTTTTGCAGGGCCAATGAGAAGGATTGTAGGATTATCAAGAAGGTGATCAATTTATATGGCAAAGCATCAGGCTAA ATGAAGGGGAAAGCCCGACCTCGAGATCGACGGTCTTCATTCCGTTCCATTTTAGATCTGAGAGATGCGAGCCATTTGTTCTGTTTCATTCCAGATTTAACGAGATGCAAACCCTTTGTTCCATCCCAATTCCGACGAAACCGACCTAAAAAACGAGGACCTCAAGATCTGCCCGAACTCATTGACCTTCGTCACTCTCCACCGAGTCGTCTCGCCATCTCACGTGATGGAAAGATCACCCTCAAGTCCAACAGACAATGCCCAAATGAAGGAAGGAGGCTTATCACAAACAATGTGGTCATGAGTTTCGAGTGCATCCACACCATCAACACTAAGAGATCAGGAAAAGAGGGATTCATTGTTATGAAGCTCGACATGAACAAAGCCTACGACAGAGTAGAATGGTACTACCTAGACAAGGTGATGGACATAATGGGCTTCAGTGGAATGTGGAGGAATAAGGTCATGAGATGCATCTTTTCAGCATTTTTCTCAATATTAGTCAATGACAATCTGAGCGAGGAGTTTAAACCAAGTAGGGGGATCAGGCAAGGGGATCTGTTGTCCCCATACCTGTTCCTCCTATGTGCTGAAGGCTTCTCGACCCTTCAAAACAGGGAAGAATCCATTTCTAACCTTTATGGCTTTAGAATCAACAAACATTGCCCCTCTATATCTCACCTATTTTTTGCTGATGATAGTCTCATTTTTTGCAGGGCCAATGAGAAGGATTGTAGGATTATCAAGAAGGTGATCAATTTATATGGCAAAGCATCAGGCTAA MKGKARPRDRRSSFRSILDLRDASHLFCFIPDLTRCKPFVPSQFRRNRPKKRGPQDLPELIDLRHSPPSRLAISRDGKITLKSNRQCPNEGRRLITNNVVMSFECIHTINTKRSGKEGFIVMKLDMNKAYDRVEWYYLDKVMDIMGFSGMWRNKVMRCIFSAFFSILVNDNLSEEFKPSRGIRQGDLLSPYLFLLCAEGFSTLQNREESISNLYGFRINKHCPSISHLFFADDSLIFCRANEKDCRIIKKVINLYGKASG Homology
BLAST of Lag0021725 vs. NCBI nr
Match: KAF7127078.1 (hypothetical protein RHSIM_Rhsim11G0146500 [Rhododendron simsii]) HSP 1 Score: 197.6 bits (501), Expect = 1.3e-46 Identity = 95/178 (53.37%), Postives = 118/178 (66.29%), Query Frame = 0
BLAST of Lag0021725 vs. NCBI nr
Match: KAF7129689.1 (hypothetical protein RHSIM_Rhsim10G0093500 [Rhododendron simsii]) HSP 1 Score: 197.6 bits (501), Expect = 1.3e-46 Identity = 95/178 (53.37%), Postives = 118/178 (66.29%), Query Frame = 0
BLAST of Lag0021725 vs. NCBI nr
Match: XP_030931068.1 (uncharacterized protein LOC115956947 [Quercus lobata]) HSP 1 Score: 196.1 bits (497), Expect = 3.9e-46 Identity = 100/218 (45.87%), Postives = 138/218 (63.30%), Query Frame = 0
BLAST of Lag0021725 vs. NCBI nr
Match: KAF7116955.1 (hypothetical protein RHSIM_RhsimUnG0010200 [Rhododendron simsii]) HSP 1 Score: 195.7 bits (496), Expect = 5.1e-46 Identity = 99/178 (55.62%), Postives = 117/178 (65.73%), Query Frame = 0
BLAST of Lag0021725 vs. NCBI nr
Match: XP_030498122.1 (uncharacterized protein LOC115713779 [Cannabis sativa]) HSP 1 Score: 194.1 bits (492), Expect = 1.5e-45 Identity = 85/169 (50.30%), Postives = 128/169 (75.74%), Query Frame = 0
BLAST of Lag0021725 vs. ExPASy Swiss-Prot
Match: P11369 (LINE-1 retrotransposable element ORF2 protein OS=Mus musculus OX=10090 GN=Pol PE=1 SV=2) HSP 1 Score: 71.2 bits (173), Expect = 1.9e-11 Identity = 46/163 (28.22%), Postives = 77/163 (47.24%), Query Frame = 0
BLAST of Lag0021725 vs. ExPASy Swiss-Prot
Match: P92555 (Uncharacterized mitochondrial protein AtMg01250 OS=Arabidopsis thaliana OX=3702 GN=AtMg01250 PE=4 SV=1) HSP 1 Score: 69.3 bits (168), Expect = 7.2e-11 Identity = 31/57 (54.39%), Postives = 39/57 (68.42%), Query Frame = 0
BLAST of Lag0021725 vs. ExPASy Swiss-Prot
Match: Q05118 (Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (Fragment) OS=Popillia japonica OX=7064 PE=4 SV=1) HSP 1 Score: 57.8 bits (138), Expect = 2.2e-07 Identity = 38/130 (29.23%), Postives = 62/130 (47.69%), Query Frame = 0
BLAST of Lag0021725 vs. ExPASy Swiss-Prot
Match: P0CV25 (Secreted RxLR effector protein 78 OS=Plasmopara viticola OX=143451 GN=RXLR78 PE=3 SV=1) HSP 1 Score: 48.9 bits (115), Expect = 1.0e-04 Identity = 30/79 (37.97%), Postives = 41/79 (51.90%), Query Frame = 0
BLAST of Lag0021725 vs. ExPASy TrEMBL
Match: A0A803QCS5 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1) HSP 1 Score: 196.4 bits (498), Expect = 1.4e-46 Identity = 85/168 (50.60%), Postives = 124/168 (73.81%), Query Frame = 0
BLAST of Lag0021725 vs. ExPASy TrEMBL
Match: A0A803QC75 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1) HSP 1 Score: 196.1 bits (497), Expect = 1.9e-46 Identity = 98/220 (44.55%), Postives = 143/220 (65.00%), Query Frame = 0
BLAST of Lag0021725 vs. ExPASy TrEMBL
Match: A0A803P996 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1) HSP 1 Score: 195.3 bits (495), Expect = 3.2e-46 Identity = 98/220 (44.55%), Postives = 143/220 (65.00%), Query Frame = 0
BLAST of Lag0021725 vs. ExPASy TrEMBL
Match: A0A803QAN3 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1) HSP 1 Score: 193.4 bits (490), Expect = 1.2e-45 Identity = 86/168 (51.19%), Postives = 120/168 (71.43%), Query Frame = 0
BLAST of Lag0021725 vs. ExPASy TrEMBL
Match: A0A803PNH7 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1) HSP 1 Score: 193.0 bits (489), Expect = 1.6e-45 Identity = 85/168 (50.60%), Postives = 122/168 (72.62%), Query Frame = 0
BLAST of Lag0021725 vs. TAIR 10
Match: ATMG01250.1 (RNA-directed DNA polymerase (reverse transcriptase) ) HSP 1 Score: 69.3 bits (168), Expect = 5.1e-12 Identity = 31/57 (54.39%), Postives = 39/57 (68.42%), Query Frame = 0
BLAST of Lag0021725 vs. TAIR 10
Match: AT4G20520.1 (RNA binding;RNA-directed DNA polymerases ) HSP 1 Score: 60.1 bits (144), Expect = 3.1e-09 Identity = 26/70 (37.14%), Postives = 45/70 (64.29%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
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