Lag0021702 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0021702
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Retrotran_gag_3 domain-containing protein
Location	chr7: 10914970 .. 10915595 (-)
RNA-Seq Expression	Lag0021702
Synteny	Lag0021702

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGATACAATCACCAAGTGACTCAGACAATCATCCTATTCATGGTGCTAAGAATTCTGGAAGCTTCGGGTATCAAATTTTGTTATCAAAATATTCTCTGGGTTGTGTACTTGTCCATTGTATTTAGGACATTTGTCCTTTCTATTTCTCTATTTTATTCATTATTGTTTTGCCCTAAATTGGGAAATCTGATGTATAAATTCAGGCATATTGCCTGTCATAAAGATCAGTGAAATAGAGAGCAGAATTAATCTCTTGAGAATTCCCCTGTAGTGATAAACCAAATATGGTATCAGAGCTTAATATGACCAACGTTACAGCCACACCTTCAGCAGCCCGCCTCTTAATCAGCTGCTTAATCAGATTACAACAATCAAGCTCGATCGAGGGAACTTCTTGCTGTGGAAAAATTTGACACTGCCTATTTTGAGAAGCTATAAGCTAGAGGGACATCTGTTAGGCTCAAAGCCATGTCCTCCGATGTATATATCGTCCACAGCCAATGCTACAACAAATGCTACAACAACAGCCGAAGGAGGAGCATCTAGCTCCGAAGCACCAGCTCCAACAAGTGGAGCATCAAGCTCAAGCATAGTGGTTGAAGCCACGATTAATCCATTATGA

mRNA sequence

ATGATGATACAATCACCAAGTGACTCAGACAATCATCCTATTCATGGTGCTAAGAATTCTGGAAGCTTCGGCCACACCTTCAGCAGCCCGCCTCTTAATCAGCTGCTTAATCAGATTACAACAATCAAGCTCGATCGAGGGAACTTCTTGCTGTGGAAAAATTTGACACTGCCTATTTTGAGAAGCTATAAGCTAGAGGGACATCTGTTAGGCTCAAAGCCATGTCCTCCGATGTATATATCGTCCACAGCCAATGCTACAACAAATGCTACAACAACAGCCGAAGGAGGAGCATCTAGCTCCGAAGCACCAGCTCCAACAAGTGGAGCATCAAGCTCAAGCATAGTGGTTGAAGCCACGATTAATCCATTATGA

Coding sequence (CDS)

ATGATGATACAATCACCAAGTGACTCAGACAATCATCCTATTCATGGTGCTAAGAATTCTGGAAGCTTCGGCCACACCTTCAGCAGCCCGCCTCTTAATCAGCTGCTTAATCAGATTACAACAATCAAGCTCGATCGAGGGAACTTCTTGCTGTGGAAAAATTTGACACTGCCTATTTTGAGAAGCTATAAGCTAGAGGGACATCTGTTAGGCTCAAAGCCATGTCCTCCGATGTATATATCGTCCACAGCCAATGCTACAACAAATGCTACAACAACAGCCGAAGGAGGAGCATCTAGCTCCGAAGCACCAGCTCCAACAAGTGGAGCATCAAGCTCAAGCATAGTGGTTGAAGCCACGATTAATCCATTATGA

Protein sequence

MMIQSPSDSDNHPIHGAKNSGSFGHTFSSPPLNQLLNQITTIKLDRGNFLLWKNLTLPILRSYKLEGHLLGSKPCPPMYISSTANATTNATTTAEGGASSSEAPAPTSGASSSSIVVEATINPL

Homology

[Close]

BLAST of Lag0021702 vs. NCBI nr
Match: KAA0066132.1 (putative leucine-rich repeat receptor-like protein kinase [Cucumis melo var. makuwa] >TYK15175.1 putative leucine-rich repeat receptor-like protein kinase [Cucumis melo var. makuwa])

HSP 1 Score: 103.6 bits (257), Expect = 1.3e-18
Identity = 54/99 (54.55%), Postives = 70/99 (70.71%), Query Frame = 0


Query: 26  TFSSPPLNQLLNQITTIKLDRGNFLLWKNLTLPILRSYKLEGHLLGSKPCPPMYISSTAN 85
           +F++PPLNQ+LNQ+TTIKLDR N+LLWK L LPIL+ YKLEGHL G KPCP  +++ T++
Sbjct: 18  SFTNPPLNQILNQLTTIKLDRSNYLLWKTLALPILKGYKLEGHLTGEKPCPEKFVTITSS 77

Query: 86  ATTNATTTAEGGASSSEAPAPTSGASSSSIVVEATINPL 125
           A +N + T EG      AP      +SSS+   A INPL
Sbjct: 78  AGSNGSVTEEGDDREQRAP---KQIASSSMSAPAIINPL 113

[Close]

BLAST of Lag0021702 vs. NCBI nr
Match: XP_022151683.1 (uncharacterized protein LOC111019598 [Momordica charantia])

HSP 1 Score: 95.9 bits (237), Expect = 2.6e-16
Identity = 49/81 (60.49%), Postives = 58/81 (71.60%), Query Frame = 0


Query: 24  GHTFSSPPLNQLLNQITTIKLDRGNFLLWKNLTLPILRSYKLEGHLLGSKPCPPMYISST 83
           G  F+SPPLNQLLNQIT+IK+DRGNFLLW+NL LPILRSYKL  +L G KPCPP ++   
Sbjct: 19  GAVFTSPPLNQLLNQITSIKMDRGNFLLWQNLALPILRSYKLFDYLTGDKPCPPTHL--- 78

Query: 84  ANATTNATTTAEGGASSSEAP 105
               T+  T  EG  SS  +P
Sbjct: 79  --VPTDTPTNIEGSTSSQSSP 94

[Close]

BLAST of Lag0021702 vs. NCBI nr
Match: KAA0060627.1 (Reverse transcriptase, RNA-dependent DNA polymerase [Cucumis melo var. makuwa])

HSP 1 Score: 91.3 bits (225), Expect = 6.4e-15
Identity = 50/97 (51.55%), Postives = 66/97 (68.04%), Query Frame = 0


Query: 27  FSSPPLNQLLNQITTIKLDRGNFLLWKNLTLPILRSYKLEGHLLGSKPCPPMYISSTANA 86
           FS+PPLNQLLNQ++++KLDRGN+LLWK L LPI++SYK EGHL G  PCPP +I+   N 
Sbjct: 15  FSNPPLNQLLNQLSSVKLDRGNYLLWKTLALPIMKSYKFEGHLTGENPCPPKFIT---NQ 74

Query: 87  TTNATTTAEGGASSSEAPAPTSGASSSSIVVEATINP 124
              + +  +G A +      T GASS S   + T+NP
Sbjct: 75  IGESQSEIDGTAEA------TDGASSRSTATK-TVNP 101

[Close]

BLAST of Lag0021702 vs. NCBI nr
Match: TYK02246.1 (uncharacterized protein E5676_scaffold18G00450 [Cucumis melo var. makuwa])

HSP 1 Score: 91.3 bits (225), Expect = 6.4e-15
Identity = 50/97 (51.55%), Postives = 66/97 (68.04%), Query Frame = 0


Query: 27  FSSPPLNQLLNQITTIKLDRGNFLLWKNLTLPILRSYKLEGHLLGSKPCPPMYISSTANA 86
           FS+PPLNQLLNQ++++KLDRGN+LLWK L LPI++SYK EGHL G  PCPP +I+   N 
Sbjct: 15  FSNPPLNQLLNQLSSVKLDRGNYLLWKTLALPIMKSYKFEGHLTGENPCPPKFIT---NQ 74

Query: 87  TTNATTTAEGGASSSEAPAPTSGASSSSIVVEATINP 124
              + +  +G A +      T GASS S   + T+NP
Sbjct: 75  IGESQSEIDGTAEA------TDGASSRSTATK-TVNP 101

[Close]

BLAST of Lag0021702 vs. NCBI nr
Match: KAA0026100.1 (uncharacterized protein E6C27_scaffold19G00360 [Cucumis melo var. makuwa])

HSP 1 Score: 90.9 bits (224), Expect = 8.4e-15
Identity = 48/83 (57.83%), Postives = 59/83 (71.08%), Query Frame = 0


Query: 27  FSSPPLNQLLNQITTIKLDRGNFLLWKNLTLPILRSYKLEGHLLGSKPCPPMYISSTANA 86
           FS+PPLNQ+LNQ+ T+KLDR N+LLWK L LPIL+ YKLEGHL G  PCP  ++ S   +
Sbjct: 18  FSNPPLNQILNQLATVKLDRKNYLLWKTLALPILKGYKLEGHLTGETPCPSHFVLSA--S 77

Query: 87  TTNATTTAEG-----GASSSEAP 105
           ++N T T EG     GASSS  P
Sbjct: 78  SSNTTVTEEGADATIGASSSITP 98

The following BLAST results are available for this feature:

BLAST of Lag0021702 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0066132.1	1.3e-18	54.55	putative leucine-rich repeat receptor-like protein kinase [Cucumis melo var. mak...	[more]
XP_022151683.1	2.6e-16	60.49	uncharacterized protein LOC111019598 [Momordica charantia]	[more]
KAA0060627.1	6.4e-15	51.55	Reverse transcriptase, RNA-dependent DNA polymerase [Cucumis melo var. makuwa]	[more]
TYK02246.1	6.4e-15	51.55	uncharacterized protein E5676_scaffold18G00450 [Cucumis melo var. makuwa]	[more]
KAA0026100.1	8.4e-15	57.83	uncharacterized protein E6C27_scaffold19G00360 [Cucumis melo var. makuwa]	[more]

BLAST of Lag0021702 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 80..114

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0021702.1	Lag0021702.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0003964	RNA-directed DNA polymerase activity