Lag0021669 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0021669
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr7: 10499976 .. 10500877 (+)
RNA-Seq Expression	Lag0021669
Synteny	Lag0021669

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTCGGCAGATCATCCACATCACGAATTGGATGGCAGGCACAATTCTAGTTTTCCGCACGACTTTTCTGCAGTTGAAGACTCTCATGCCTGTTTAATGAAAAACTGGCTAGCTCTGGCTACCTTTCGGAGCAAACAAAAGATCCCCCAATCACACTGCCTGTATGAACAAACAAACTTTGTACAACCAGCTATTCTATGCCATTAGACTCGTGACATCCATGTATTGAGTCGTCAAATGAGCCATGTTAAGAAAGCCCAAGCTTATACGCATTGGTCCCGGGGTGCCCATCTTCAAGAAGGCCCGAATGAAAGACCCAAGCCTACATGAACCATCACCCAAGCTCATGCAAGAAGGGTCTCATTGTCATGGAAGCCCTTTCCTTACTCCTCAATATAGTAACGAATAACGTTTTTCTGACCAATTCTCATGGCTTTAGGAATGAGCCCCTAAGCTAGTGCCTAATCGAATTTCTTTTTTCAATAAGGGTTCGTTTTCAATAAGCAATCCCGAACTAGCTTCTTTACGAACTGGCTTGACCCAACCCAAATATCCAAGTGGGCCCAATGAGAAGAGACCCACCCGCCCACTTTCTCTCATGTATTCAGCGAAAAAAACAATTGTTACTCGTACATACATTTTTTCAAATTACTCATAATGAAATCAAGAATCCTAATCATGGAAGGATCACTCTTTCATTTGTTAACTAGTAGGTCTTGCATGGCAGAGGAATAGAGCAAGGTCTCTCCTCTACGCCGCTATCTCCCGTCGCTCTCTGGAGGAAATTGATTAAATCAAATGGGCAAAAGACTAATGAAGAGAGGTCTTTCAAAGACACTCTTATGACTTCGCCTCTGTTTGGAGAGACTTTTCAGAATTCATCTGTGGTAGAGGAATGA

mRNA sequence

ATGGATTCGGCAGATCATCCACATCACGAATTGGATGGCAGGCACAATTCTAGTTTTCCGCACGACTTTTCTGCAGTTGAAGACTCTCATGCCTGTTTAATGAAAAACTGGCTAGCTCTGGCTACCTTTCGGAGCAAACAAAAGATCCCCCAATCACACTGCCTAGGAATAGAGCAAGGTCTCTCCTCTACGCCGCTATCTCCCGTCGCTCTCTGGAGGAAATTGATTAAATCAAATGGGCAAAAGACTAATGAAGAGAGGTCTTTCAAAGACACTCTTATGACTTCGCCTCTGTTTGGAGAGACTTTTCAGAATTCATCTGTGGTAGAGGAATGA

Coding sequence (CDS)

ATGGATTCGGCAGATCATCCACATCACGAATTGGATGGCAGGCACAATTCTAGTTTTCCGCACGACTTTTCTGCAGTTGAAGACTCTCATGCCTGTTTAATGAAAAACTGGCTAGCTCTGGCTACCTTTCGGAGCAAACAAAAGATCCCCCAATCACACTGCCTAGGAATAGAGCAAGGTCTCTCCTCTACGCCGCTATCTCCCGTCGCTCTCTGGAGGAAATTGATTAAATCAAATGGGCAAAAGACTAATGAAGAGAGGTCTTTCAAAGACACTCTTATGACTTCGCCTCTGTTTGGAGAGACTTTTCAGAATTCATCTGTGGTAGAGGAATGA

Protein sequence

MDSADHPHHELDGRHNSSFPHDFSAVEDSHACLMKNWLALATFRSKQKIPQSHCLGIEQGLSSTPLSPVALWRKLIKSNGQKTNEERSFKDTLMTSPLFGETFQNSSVVEE

Homology

[Close]

BLAST of Lag0021669 vs. NCBI nr
Match: KRG94276.1 (hypothetical protein GLYMA_19G072600v4 [Glycine max])

HSP 1 Score: 71.6 bits (174), Expect = 4.7e-09
Identity = 32/39 (82.05%), Postives = 34/39 (87.18%), Query Frame = 0


Query: 17 SSFPHDFSAVEDSHACLMKNWLALATFRSKQKIPQSHCL 56
          +S PH FSAVED HACLMKNWLALAT RSKQ +PQSHCL
Sbjct: 47 ASSPHYFSAVEDYHACLMKNWLALATLRSKQNLPQSHCL 85

[Close]

BLAST of Lag0021669 vs. NCBI nr
Match: YP_007516879.1 (hypothetical protein GlmaxMp30 [Glycine max] >YP_009532823.1 hypothetical protein [Glycine soja] >AFR34347.1 hypothetical protein GlmaxMp30 [Glycine max] >AYD72971.1 hypothetical protein [Glycine soja] >KAG4906061.1 hypothetical protein JHK86_057308 [Glycine max] >KAG4912249.1 hypothetical protein JHK86_052682 [Glycine max] >KAG4943581.1 hypothetical protein JHK85_048227 [Glycine max])

HSP 1 Score: 71.6 bits (174), Expect = 4.7e-09
Identity = 32/39 (82.05%), Postives = 34/39 (87.18%), Query Frame = 0


Query: 17 SSFPHDFSAVEDSHACLMKNWLALATFRSKQKIPQSHCL 56
          +S PH FSAVED HACLMKNWLALAT RSKQ +PQSHCL
Sbjct: 47 ASSPHYFSAVEDYHACLMKNWLALATLRSKQNLPQSHCL 85

[Close]

BLAST of Lag0021669 vs. NCBI nr
Match: RZB46838.1 (hypothetical protein D0Y65_050752 [Glycine soja])

HSP 1 Score: 71.6 bits (174), Expect = 4.7e-09
Identity = 32/39 (82.05%), Postives = 34/39 (87.18%), Query Frame = 0


Query: 17  SSFPHDFSAVEDSHACLMKNWLALATFRSKQKIPQSHCL 56
           +S PH FSAVED HACLMKNWLALAT RSKQ +PQSHCL
Sbjct: 129 ASSPHYFSAVEDYHACLMKNWLALATLRSKQNLPQSHCL 167

[Close]

BLAST of Lag0021669 vs. NCBI nr
Match: RHN66747.1 (hypothetical protein MtrunA17_Chr3g0094931 [Medicago truncatula])

HSP 1 Score: 71.6 bits (174), Expect = 4.7e-09
Identity = 32/39 (82.05%), Postives = 34/39 (87.18%), Query Frame = 0


Query: 17 SSFPHDFSAVEDSHACLMKNWLALATFRSKQKIPQSHCL 56
          +S PH FSAVED HACLMKNWLALAT RSKQ +PQSHCL
Sbjct: 7  ASSPHYFSAVEDYHACLMKNWLALATLRSKQNLPQSHCL 45

[Close]

BLAST of Lag0021669 vs. NCBI nr
Match: KAG4927047.1 (hypothetical protein JHK85_053533 [Glycine max])

HSP 1 Score: 71.6 bits (174), Expect = 4.7e-09
Identity = 32/39 (82.05%), Postives = 34/39 (87.18%), Query Frame = 0


Query: 17  SSFPHDFSAVEDSHACLMKNWLALATFRSKQKIPQSHCL 56
           +S PH FSAVED HACLMKNWLALAT RSKQ +PQSHCL
Sbjct: 74  ASSPHYFSAVEDYHACLMKNWLALATLRSKQNLPQSHCL 112

The following BLAST results are available for this feature:

BLAST of Lag0021669 vs. NCBI nr


Match Name	E-value	Identity	Description
KRG94276.1	4.7e-09	82.05	hypothetical protein GLYMA_19G072600v4 [Glycine max]	[more]
YP_007516879.1	4.7e-09	82.05	hypothetical protein GlmaxMp30 [Glycine max] >YP_009532823.1 hypothetical protei...	[more]
RZB46838.1	4.7e-09	82.05	hypothetical protein D0Y65_050752 [Glycine soja]	[more]
RHN66747.1	4.7e-09	82.05	hypothetical protein MtrunA17_Chr3g0094931 [Medicago truncatula]	[more]
KAG4927047.1	4.7e-09	82.05	hypothetical protein JHK85_053533 [Glycine max]	[more]

BLAST of Lag0021669 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..17

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0021669.1	Lag0021669.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005739	mitochondrion